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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047978 ID=TCONS_00047978|Name=TCONS_00047978|organism=Clytia hemisphaerica|type=transcript|length=1154bp
CGAAGATTCTAAATTCTTCTTTTGAGATGGCCTGTCGTTTGTGCAAGGAG
CCATACAAGGCTCGATCCGACAATCGATGTAATTTGTTTAGCTACCAGAA
AAAGCTAGACGGGATTCCTCAACTGTTGCTAAAAGACATCGGTGTTGAAA
TCACAAAAGAAGGCGGTAAATCAGACAGTATCTGCAGGAACTGTGGTTCT
GGGATAAAAAGAATTAAAGCcgcttttgaaattttggacaaatGGGACCT
GAGTGTTGAGTTGATAAATAAAACTGTACAGCGAAAGCGACAATTAGAAA
ACGACACTGCCCGAGGAAGTAATAAAAGAGGTGAAGAAAtagaggaaaaa
agaaaaagtggaaGAGTCCAGTGAAGACACTAACAGTATGATACCAAATA
AACATGTTGATCCTGATAATACAGTatgtatttttacaattttttgtaaT
ACTCGAATTAGTTTGAATCAAAGGTAagagctgaaaaaaaaattacttcg
aAGTTCAGCAAAAATATCCTTTTTATTCTGCAAAAAAGGTgtatcacacc
cctgtctctcagacccaatgaaaattaaatttacgtagcagtaaaatttt
ctttttacacaGAGTGCAAAGAGTGCAGGAGACTACAAATACATATCAGA
TTTTTGCGAAGCAGAAGTCGGATCATTGGAATCAAAATCAAGTATCAATA
ATACAGATGTGAAATCATTGATTAATTTAGATGACAAGAAGCTATTTCGT
GAAATCGAGAAGTGCTGTCCTGTTCTGGTTGCGGCTTTAAAGGGAGCAGT
TGGAGAAAAAAAAGCACATTTAATTGGACCTCTCTTAACAGTAGTTGGAA
TTTTATACAAGTCAAGATATTCTGGGAGTCGTGCTTGCGTTATAACTCAT
AGAATGGACCAGCTCCTAGTCGCTGCAGGtgcaaaaaagaaagttttcaa
aTGGCTTAACTGTTTCGCAGTGACAAATTCGTACTCAACAGCAAATCGAA
AGCACAAACAAATGGCTAAAAATCATGACGAAAAGGTTTTAAAATGGAAA
AAGGAGATCGAAGACGCATGTAAGCAAATAATACAAGAGAAACCTGGCAT
TACCAAAGAAGAGCTTTTAGCAGAACTTAAGACTCGGAAGGTGCTAGAAT
TTCA Run BLAST on NCBI protein sequence of TCONS_00047978-protein >TCONS_00047978-protein ID=TCONS_00047978-protein|Name=TCONS_00047978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
KILNSSFEMACRLCKEPYKARSDNRCNLFSYQKKLDGIPQLLLKDIGVEI
TKEGGKSDSICRNCGSGIKRIKAAFEILDKWDLSVELINKTVQRKRQLEN
DTARGSNKRGEEIEEKRKSGRVQ Run BLAST on NCBI transcript from alignment at scaffold_14:210174..211608+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047978 ID=TCONS_00047978|Name=TCONS_00047978|organism=Clytia hemisphaerica|type=transcript|length=1435bp|location=Sequence derived from alignment at scaffold_14:210174..211608+ (Clytia hemisphaerica)
CGAAGATTCTAAATTCTTCTTTTGAGATGGCCTGTCGTTTGTGCAAGGAG
CCATACAAGGCTCGATCCGACAATCGATGTAATTTGTTTAGCTACCAGAA
AAAGCTAGACGGGATTCCTCAACTGTTGCTAAAAGACATCGGTGTTGAAA
TCACAAAAGAAGGCGGTAAATCAGACAGTATCTGCAGGAACTGTGGTTCT
GGGATAAAAAGAATTAAAGCcgcttttgaaattttggacaaatGGGACCT
GAGTGTTGAGTTGATAAATAAAACTGTACAGCGAAAGCGACAATTAGAAA
ACGACACTGCCCGAGGAAGTAATAAAAGAGGTGAAGAAAtagaggaaaaa
agaaaaagtggaaGAGTCCAGTGAAGACACTAACAGTATGATACCAAATA
AACATGTTGATCCTGATAATACAGTatgtatttttacaattttttgtaaT
ACTCGAATTAGTTTGAATCAAAGGTAagagctgaaaaaaaaattacttcg
aAGTTCAGCAAAAATATCCTTTTTATTCTGCAAAAAAGGTgtatcacacc
cctgtctctcagacccaatgaaaattaaatttacgtagcagtaaaatttt
ctttttacacaGAGTGCAAAGAGTGCAGGAGACTACAAATACATATCAGA
TTTTTGCGAAGCAGAAGTCGGATCATTGGAATCAAAATCAAGTATCAATA
ATACAGATGTGAAATCATTGATTAATTTAGATGACAAGAAGCTATTTCGT
GAAATCGAGAAGTGCTGTCCTGTTCTGGTTGCGGCTTTAAAGGGAGCAGT
TGGAGAAAAAAAAGCACATTTAATTGGACCTCTCTTAACAGTAGTTGGAA
TTTTATACAAGTCAAGATATTCTGGGAGTCGTGCTTGCGTTATAACTCAT
AGAATGGACCAGCTCCTAGTCGCTGCAGGTATTTCAGTTTTAAAGGTGAT
AGTAGGAACTAAAGGAATTTTTTGTTGGCACCCTGCTGAGTATACTTTAA
ACTTTAATACCCTATATCAATGCTACTCATGcctaaaattttacttaaga
atAAAGTCGGATGGCTACCTTTTCAAATTGCTTTTATTTTATGGTGTTCT
CGAGGCTCACTCATCATACAAAATTGTTCGAATAAAAATTCATATGCAGT
GCAGGACGATTTTTCGGAAACTTTAGTAATATAGGGACCGTTTGTTTGTT
CATTCGCAGGtgcaaaaaagaaagttttcaaaTGGCTTAACTGTTTCGCA
GTGACAAATTCGTACTCAACAGCAAATCGAAAGCACAAACAAATGGCTAA
AAATCATGACGAAAAGGTTTTAAAATGGAAAAAGGAGATCGAAGACGCAT
GTAAGCAAATAATACAAGAGAAACCTGGCATTACCAAAGAAGAGCTTTTA
GCAGAACTTAAGACTCGGAAGGTGCTAGAATTTCA Coding sequence (CDS) from alignment at scaffold_14:210174..211608+ >TCONS_00047978 ID=TCONS_00047978|Name=TCONS_00047978|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_14:210174..211608+ (Clytia hemisphaerica)
AAGATTCTAAATTCTTCTTTTGAGATGGCCTGTCGTTTGTGCAAGGAGCC
ATACAAGGCTCGATCCGACAATCGATGTAATTTGTTTAGCTACCAGAAAA
AGCTAGACGGGATTCCTCAACTGTTGCTAAAAGACATCGGTGTTGAAATC
ACAAAAGAAGGCGGTAAATCAGACAGTATCTGCAGGAACTGTGGTTCTGG
GATAAAAAGAATTAAAGCcgcttttgaaattttggacaaatGGGACCTGA
GTGTTGAGTTGATAAATAAAACTGTACAGCGAAAGCGACAATTAGAAAAC
GACACTGCCCGAGGAAGTAATAAAAGAGGTGAAGAAAtagaggaaaaaag
aaaaagtggaaGAGTCCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047978-exon-scaffold_14-1491911889:210174..211101 | TCONS_00047978-exon-scaffold_14-1491911889:210174..211101 | Clytia hemisphaerica | exon |
| TCONS_00047978-exon-scaffold_14-1510915933:210174..211101 | TCONS_00047978-exon-scaffold_14-1510915933:210174..211101 | Clytia hemisphaerica | exon |
| TCONS_00047978-exon-scaffold_14-1575043694:210174..211101 | TCONS_00047978-exon-scaffold_14-1575043694:210174..211101 | Clytia hemisphaerica | exon |
| TCONS_00047978-exon-scaffold_14-1491911889:211383..211608 | TCONS_00047978-exon-scaffold_14-1491911889:211383..211608 | Clytia hemisphaerica | exon |
| TCONS_00047978-exon-scaffold_14-1510915933:211383..211608 | TCONS_00047978-exon-scaffold_14-1510915933:211383..211608 | Clytia hemisphaerica | exon |
| TCONS_00047978-exon-scaffold_14-1575043694:211383..211608 | TCONS_00047978-exon-scaffold_14-1575043694:211383..211608 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:210174..211608 + |
Blast
The following BLAST results are available for this feature:
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