|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047962 ID=TCONS_00047962|Name=TCONS_00047962|organism=Clytia hemisphaerica|type=transcript|length=1298bp
AAGATGTCATCAATTATCGTCAATTTACAAAATTATATTGATTTATCCAG
AGAAAGAcgcaaagtccataaaaaagaaGCTTTATTTTGGGACAAAGTCA
ATACTTATGCTAATATTTCGCTCATAATTCTTACCTCAATGGCTACTGTA
TTGTCCGTTCTGGAAGGCTTAATCCCGTTCTATATTGTTTCTATTTTCAC
TGGCTTGGCGACGATCATATCCAGTTTGATTGGAGTTTTCAAACCTTTTG
ATAAACGCAATATCCAGGAGATCTCATCCAAGAAATTCAAAGTTTTGAGC
CTGAAACTGGTCGCttgtaaaaacatgaaagatTATAATGAACTTCGAGC
TGAGCTTTTGGAAACCATGATGGATGAGCCATTCACTAGAGAAAAGAAAA
GGAAGAGAGGGAATCAGAACAAAAAAGTTGGGAAAGACGGTCAAAATGAA
GAGACAGCAAAGTTATTGGATGAACAAGACGAAGGGATAGGAAACCATGA
CAACCAattcaaacaaaaagaaaagactAAGGTACGTGAGAATCTCGATG
ATAATACAAAACTTTGGAATTTGGACCCTGAAATGAGAAAAGCTGCAATA
ATCgaagaaattaaaatgaaaacgTTTGAATACAACCTCTTACAACCGCA
TGGTGGCAAAATGGAAGAACAAACCGCGCAGAATCTCAAGCATTGTGGAA
CGTCAGATAACCAGCAAGAACAGCTTATCGAAACGACCGAGGAATGTCAA
TTACAAGCagattattcaaattattccaTTCCAGCTAAGAACGATACAGT
CTACGATAGATATCGTCTACAACGATACGAGACCGCAACCCAAAAACCGA
TAGATCGATATCGTCTACAACGATACGAGACCGCAACCCAAAAACCGAAC
CAATCATTCACCAGTTCATTACATGTGGAGATTAAAGAAAACGCTGTTTG
TGAGAAATCAGAAATTGAAGATTAAGATCCAGTACCATCTAAAGACGAAG
CTACTTTTCGGTTACCATCAACTATGATGAGAAGCATTGTTAATAGGGAC
TATCAAATACAGATGCAGTCATCGACAGTCCCGTATCAGGGTCGTTAAAC
GATTCTGTGACGCAAAGAGGCCAGTGCCGTAAAATTAGaggaatcttttt
ttattgatttctcTTTTATCGCCAAAATAAAGGTATATACAAGGTTGTCA
CAGGTTTGCCAAGTTGAAAATTACAGACTTTTAGTCTCAAAAGCCACCTT
TTTCCAgcttttttacttgaaaatgtcaaaaattttccagaCATTTTG Run BLAST on NCBI protein sequence of TCONS_00047962-protein >TCONS_00047962-protein ID=TCONS_00047962-protein|Name=TCONS_00047962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
KMSSIIVNLQNYIDLSRERRKVHKKEALFWDKVNTYANISLIILTSMATV
LSVLEGLIPFYIVSIFTGLATIISSLIGVFKPFDKRNIQEISSKKFKVLS
LKLVACKNMKDYNELRAELLETMMDEPFTREKKRKRGNQNKKVGKDGQNE
ETAKLLDEQDEGIGNHDNQFKQKEKTKVRENLDDNTKLWNLDPEMRKAAI
IEEIKMKTFEYNLLQPHGGKMEEQTAQNLKHCGTSDNQQEQLIETTEECQ
LQADYSNYSIPAKNDTVYDRYRLQRYETATQKPIDRYRLQRYETATQKPN
QSFTSSLHVEIKENAVCEKSEIED Run BLAST on NCBI transcript from alignment at scaffold_139:515469..516766 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047962 ID=TCONS_00047962|Name=TCONS_00047962|organism=Clytia hemisphaerica|type=transcript|length=1298bp|location=Sequence derived from alignment at scaffold_139:515469..516766 (Clytia hemisphaerica)
CAAAATGtctggaaaatttttgacattttcaagtaaaaaagcTGGAAAAA
GGTGGCTTTTGAGACTAAAAGTCTGTAATTTTCAACTTGGCAAACCTGTG
ACAACCTTGTATATACCTTTATTTTGGCGATAAAAgagaaatcaataaaa
aaagattcctCTAATTTTACGGCACTGGCCTCTTTGCGTCACAGAATCGT
TTAACGACCCTGATACGGGACTGTCGATGACTGCATCTGTATTTGATAGT
CCCTATTAACAATGCTTCTCATCATAGTTGATGGTAACCGAAAAGTAGCT
TCGTCTTTAGATGGTACTGGATCTTAATCTTCAATTTCTGATTTCTCACA
AACAGCGTTTTCTTTAATCTCCACATGTAATGAACTGGTGAATGATTGGT
TCGGTTTTTGGGTTGCGGTCTCGTATCGTTGTAGACGATATCGATCTATC
GGTTTTTGGGTTGCGGTCTCGTATCGTTGTAGACGATATCTATCGTAGAC
TGTATCGTTCTTAGCTGGAAtggaataatttgaataatctGCTTGTAATT
GACATTCCTCGGTCGTTTCGATAAGCTGTTCTTGCTGGTTATCTGACGTT
CCACAATGCTTGAGATTCTGCGCGGTTTGTTCTTCCATTTTGCCACCATG
CGGTTGTAAGAGGTTGTATTCAAAcgttttcattttaatttcttcGATTA
TTGCAGCTTTTCTCATTTCAGGGTCCAAATTCCAAAGTTTTGTATTATCA
TCGAGATTCTCACGTACCTTagtcttttctttttgtttgaatTGGTTGTC
ATGGTTTCCTATCCCTTCGTCTTGTTCATCCAATAACTTTGCTGTCTCTT
CATTTTGACCGTCTTTCCCAACTTTTTTGTTCTGATTCCCTCTCTTCCTT
TTCTTTTCTCTAGTGAATGGCTCATCCATCATGGTTTCCAAAAGCTCAGC
TCGAAGTTCATTATAatctttcatgtttttacaaGCGACCAGTTTCAGGC
TCAAAACTTTGAATTTCTTGGATGAGATCTCCTGGATATTGCGTTTATCA
AAAGGTTTGAAAACTCCAATCAAACTGGATATGATCGTCGCCAAGCCAGT
GAAAATAGAAACAATATAGAACGGGATTAAGCCTTCCAGAACGGACAATA
CAGTAGCCATTGAGGTAAGAATTATGAGCGAAATATTAGCATAAGTATTG
ACTTTGTCCCAAAATAAAGCttcttttttatggactttgcgTCTTTCTCT
GGATAAATCAATATAATTTTGTAAATTGACGATAATTGATGACATCTT Coding sequence (CDS) from alignment at scaffold_139:515469..516766 >TCONS_00047962 ID=TCONS_00047962|Name=TCONS_00047962|organism=Clytia hemisphaerica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_139:515469..516766 (Clytia hemisphaerica)
TTAATCTTCAATTTCTGATTTCTCACAAACAGCGTTTTCTTTAATCTCCA
CATGTAATGAACTGGTGAATGATTGGTTCGGTTTTTGGGTTGCGGTCTCG
TATCGTTGTAGACGATATCGATCTATCGGTTTTTGGGTTGCGGTCTCGTA
TCGTTGTAGACGATATCTATCGTAGACTGTATCGTTCTTAGCTGGAAtgg
aataatttgaataatctGCTTGTAATTGACATTCCTCGGTCGTTTCGATA
AGCTGTTCTTGCTGGTTATCTGACGTTCCACAATGCTTGAGATTCTGCGC
GGTTTGTTCTTCCATTTTGCCACCATGCGGTTGTAAGAGGTTGTATTCAA
AcgttttcattttaatttcttcGATTATTGCAGCTTTTCTCATTTCAGGG
TCCAAATTCCAAAGTTTTGTATTATCATCGAGATTCTCACGTACCTTagt
cttttctttttgtttgaatTGGTTGTCATGGTTTCCTATCCCTTCGTCTT
GTTCATCCAATAACTTTGCTGTCTCTTCATTTTGACCGTCTTTCCCAACT
TTTTTGTTCTGATTCCCTCTCTTCCTTTTCTTTTCTCTAGTGAATGGCTC
ATCCATCATGGTTTCCAAAAGCTCAGCTCGAAGTTCATTATAatctttca
tgtttttacaaGCGACCAGTTTCAGGCTCAAAACTTTGAATTTCTTGGAT
GAGATCTCCTGGATATTGCGTTTATCAAAAGGTTTGAAAACTCCAATCAA
ACTGGATATGATCGTCGCCAAGCCAGTGAAAATAGAAACAATATAGAACG
GGATTAAGCCTTCCAGAACGGACAATACAGTAGCCATTGAGGTAAGAATT
ATGAGCGAAATATTAGCATAAGTATTGACTTTGTCCCAAAATAAAGCttc
ttttttatggactttgcgTCTTTCTCTGGATAAATCAATATAATTTTGTA
AATTGACGATAATTGATGACATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047962-exon-scaffold_139-1491911889:515469..516766 | TCONS_00047962-exon-scaffold_139-1491911889:515469..516766 | Clytia hemisphaerica | exon |
| TCONS_00047962-exon-scaffold_139-1510915933:515469..516766 | TCONS_00047962-exon-scaffold_139-1510915933:515469..516766 | Clytia hemisphaerica | exon |
| TCONS_00047962-exon-scaffold_139-1575043694:515469..516766 | TCONS_00047962-exon-scaffold_139-1575043694:515469..516766 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:515469..516766 . |
Blast
The following BLAST results are available for this feature:
|
