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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047961 ID=TCONS_00047961|Name=TCONS_00047961|organism=Clytia hemisphaerica|type=transcript|length=948bp
TTTCCcatcaaaataaatcatttttgagcCAAGTTTTGATAAAGAAGGTC
AAATTTAAGATCATAGTAAAATGGCATTTGATACAAAAATCTTTGCAAAA
GCAGCTTATTCTGTAGCTTCTTTTCTACATATTTTTGGGTTCTGTTTACT
GCTTTTAACCCAATTCAAGGATGaagaaaaaacacaaagactCTACTTCA
TGGCTTTGAGCATAGCAGAATTTACCATAACTGCTTTTGGAGTAATTAAA
AGACTTCTTCACAATAAAGAACAGATATACCCTATTGACATGATCAGGAT
ATTTTTTGGATACACCTTAATGTACGAAGTCATGACAGCATTGACTATTG
ATCgatttttcaagatatttttgaaCATTAAATATCCTTTATATTGGAAA
TATAGTCGAACAGTAAAATTGGGCATTGCAATGTGTCTTGTTAACATTTC
AATATGTATAGGATTTTGGGTCAGTGGAATAGAAACCAGTACATTATTTG
CATATTATTTCATACCATTTGATGTCATTTTTTTGAGTGTTGCAATGGGA
ACATATTGTTATATTTATTTCATGATACAGAAGAACAGAAAGGTATCAAG
TTTTGAAGTCAGCAATACAACAAGTCGAGCGCAATCAACAAACAGTGATA
GTAAACAAACCAGCAGAAAATTCAGACATAACAAACAATTCATTTCTACT
TTTCTTCTGGTGATAACGTTTTCATTCTTCACAATAATACCAgatcttat
ttatttttattatggaTTAAACAAGTATGTTGGTTTTGAGATATGGATGA
AACAATCTCTGACCATATTATACTCTTTGAGTTATATATGTGATTTTGTG
ATCTATACTTTCTCTTCAAAACCCATCAggaagaaaatcaagaaatggTT
ACACAAACAATAGACTGACTTTAACAATGACAAAAGCTTCAATACACN Run BLAST on NCBI protein sequence of TCONS_00047961-protein >TCONS_00047961-protein ID=TCONS_00047961-protein|Name=TCONS_00047961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MAFDTKIFAKAAYSVASFLHIFGFCLLLLTQFKDEEKTQRLYFMALSIAE
FTITAFGVIKRLLHNKEQIYPIDMIRIFFGYTLMYEVMTALTIDRFFKIF
LNIKYPLYWKYSRTVKLGIAMCLVNISICIGFWVSGIETSTLFAYYFIPF
DVIFLSVAMGTYCYIYFMIQKNRKVSSFEVSNTTSRAQSTNSDSKQTSRK
FRHNKQFISTFLLVITFSFFTIIPDLIYFYYGLNKYVGFEIWMKQSLTIL
YSLSYICDFVIYTFSSKPIRKKIKKWLHKQ Run BLAST on NCBI transcript from alignment at scaffold_139:460128..461075 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047961 ID=TCONS_00047961|Name=TCONS_00047961|organism=Clytia hemisphaerica|type=transcript|length=948bp|location=Sequence derived from alignment at scaffold_139:460128..461075 (Clytia hemisphaerica)
NGTGTATTGAAGCTTTTGTCATTGTTAAAGTCAGTCTATTGTTTGTGTAA
ccatttcttgattttcttccTGATGGGTTTTGAAGAGAAAGTATAGATCA
CAAAATCACATATATAACTCAAAGAGTATAATATGGTCAGAGATTGTTTC
ATCCATATCTCAAAACCAACATACTTGTTTAAtccataataaaaataaat
aagatcTGGTATTATTGTGAAGAATGAAAACGTTATCACCAGAAGAAAAG
TAGAAATGAATTGTTTGTTATGTCTGAATTTTCTGCTGGTTTGTTTACTA
TCACTGTTTGTTGATTGCGCTCGACTTGTTGTATTGCTGACTTCAAAACT
TGATACCTTTCTGTTCTTCTGTATCATGAAATAAATATAACAATATGTTC
CCATTGCAACACTCAAAAAAATGACATCAAATGGTATGAAATAATATGCA
AATAATGTACTGGTTTCTATTCCACTGACCCAAAATCCTATACATATTGA
AATGTTAACAAGACACATTGCAATGCCCAATTTTACTGTTCGACTATATT
TCCAATATAAAGGATATTTAATGttcaaaaatatcttgaaaaatcGATCA
ATAGTCAATGCTGTCATGACTTCGTACATTAAGGTGTATCCAAAAAATAT
CCTGATCATGTCAATAGGGTATATCTGTTCTTTATTGTGAAGAAGTCTTT
TAATTACTCCAAAAGCAGTTATGGTAAATTCTGCTATGCTCAAAGCCATG
AAGTAGagtctttgtgttttttcttCATCCTTGAATTGGGTTAAAAGCAG
TAAACAGAACCCAAAAATATGTAGAAAAGAAGCTACAGAATAAGCTGCTT
TTGCAAAGATTTTTGTATCAAATGCCATTTTACTATGATCTTAAATTTGA
CCTTCTTTATCAAAACTTGgctcaaaaatgatttattttgatgGGAAA Coding sequence (CDS) from alignment at scaffold_139:460128..461075 >TCONS_00047961 ID=TCONS_00047961|Name=TCONS_00047961|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_139:460128..461075 (Clytia hemisphaerica)
CTATTGTTTGTGTAAccatttcttgattttcttccTGATGGGTTTTGAAG
AGAAAGTATAGATCACAAAATCACATATATAACTCAAAGAGTATAATATG
GTCAGAGATTGTTTCATCCATATCTCAAAACCAACATACTTGTTTAAtcc
ataataaaaataaataagatcTGGTATTATTGTGAAGAATGAAAACGTTA
TCACCAGAAGAAAAGTAGAAATGAATTGTTTGTTATGTCTGAATTTTCTG
CTGGTTTGTTTACTATCACTGTTTGTTGATTGCGCTCGACTTGTTGTATT
GCTGACTTCAAAACTTGATACCTTTCTGTTCTTCTGTATCATGAAATAAA
TATAACAATATGTTCCCATTGCAACACTCAAAAAAATGACATCAAATGGT
ATGAAATAATATGCAAATAATGTACTGGTTTCTATTCCACTGACCCAAAA
TCCTATACATATTGAAATGTTAACAAGACACATTGCAATGCCCAATTTTA
CTGTTCGACTATATTTCCAATATAAAGGATATTTAATGttcaaaaatatc
ttgaaaaatcGATCAATAGTCAATGCTGTCATGACTTCGTACATTAAGGT
GTATCCAAAAAATATCCTGATCATGTCAATAGGGTATATCTGTTCTTTAT
TGTGAAGAAGTCTTTTAATTACTCCAAAAGCAGTTATGGTAAATTCTGCT
ATGCTCAAAGCCATGAAGTAGagtctttgtgttttttcttCATCCTTGAA
TTGGGTTAAAAGCAGTAAACAGAACCCAAAAATATGTAGAAAAGAAGCTA
CAGAATAAGCTGCTTTTGCAAAGATTTTTGTATCAAATGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047961-exon-scaffold_139-1491911889:460128..461075 | TCONS_00047961-exon-scaffold_139-1491911889:460128..461075 | Clytia hemisphaerica | exon |
| TCONS_00047961-exon-scaffold_139-1510915933:460128..461075 | TCONS_00047961-exon-scaffold_139-1510915933:460128..461075 | Clytia hemisphaerica | exon |
| TCONS_00047961-exon-scaffold_139-1575043694:460128..461075 | TCONS_00047961-exon-scaffold_139-1575043694:460128..461075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:460128..461075 . |
Blast
The following BLAST results are available for this feature:
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