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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047958 ID=TCONS_00047958|Name=TCONS_00047958|organism=Clytia hemisphaerica|type=transcript|length=978bp
ggacacgtgattttaattgttctctttaatgacacgtggtttgcgcaatg
tttacattttactactttaatgtccctttaacttCGCTCAGATTAATTAA
ATCGTTCATCCACATGAGTAGATTGAACAAAGAAAGTGCCCTCAAATACC
AGATAGCTTCGATTTTCTTCTCCGGTATGGCACACCTATTTTGTAGCCTA
GCCTTATACAAAACAGCTTGAGTCAGTTTCTGTAAAATTGCCAGTATGTT
TCCTGCTAAAGAAAGCCATTCTTTTCGTTCGAAAGCACCAGCCATGATCA
AACAACTCATAGTAAATATACATAATAAAGTGATCCAGAACAAGAAAGAA
GCCAGATACCGGTCTTTATAATTCAACGGTCGTTGATGATTTTCTGttct
ttgaaagaaagaaaatgttccaACAATCATTAAAAGTATTCCTAATACCT
CCACCAATATTCGTCCCCAAGAATTTATAAGATTCTCTCGTTCGTCATGG
TAGGATAACATTTGGAACACGGTTGCAAAACAAGCAAATGAGAAAACTCC
AGCAGCCCATTTCCGTTGAGCGAATATACCAGTAGGTAGTTGTATGATTG
ATAACACAAGAAGGGCAGCAACCAGAAGAAGAAAACAACCAACACTGGAG
ACTGTGTAAACAATGGTTAACTCGTAATTGGGATGAGGTAGTGAGTGATT
TCTTCCAATATCTGAGAAATTGGATATATTCATTTTGAAGTCACCTTGAT
TGTGGCTTGATTCGTTCGAATGATTTGTAGATAGCTGAACGGTTGTTAAA
GATGTTTCTTTTTACAAactgtattttttttatttgtgccACTGCGGAGT
CCCTTATTTTGTTGATCTTTAATGATTTTTCATTCGTTGAAAGGCTTTAG
TCGCTTTGTATGGTCGTCAACAAACAATTCGTATCAAACAACTGGTTTCT
CTTTAGAGTCTTGATGCTTTCATTTAAC Run BLAST on NCBI protein sequence of TCONS_00047958-protein >TCONS_00047958-protein ID=TCONS_00047958-protein|Name=TCONS_00047958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MNISNFSDIGRNHSLPHPNYELTIVYTVSSVGCFLLLVAALLVLSIIQLP
TGIFAQRKWAAGVFSFACFATVFQMLSYHDERENLINSWGRILVEVLGIL
LMIVGTFSFFQRTENHQRPLNYKDRYLASFLFWITLLCIFTMSCLIMAGA
FERKEWLSLAGNILAILQKLTQAVLYKARLQNRCAIPEKKIEAIWYLRAL
SLFNLLMWMNDLINLSEVKGTLK Run BLAST on NCBI transcript from alignment at scaffold_139:309807..310784 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047958 ID=TCONS_00047958|Name=TCONS_00047958|organism=Clytia hemisphaerica|type=transcript|length=978bp|location=Sequence derived from alignment at scaffold_139:309807..310784 (Clytia hemisphaerica)
GTTAAATGAAAGCATCAAGACTCTAAAGAGAAACCAGTTGTTTGATACGA
ATTGTTTGTTGACGACCATACAAAGCGACTAAAGCCTTTCAACGAATGAA
AAATCATTAAAGATCAACAAAATAAGGGACTCCGCAGTggcacaaataaa
aaaaatacagtTTGTAAAAAGAAACATCTTTAACAACCGTTCAGCTATCT
ACAAATCATTCGAACGAATCAAGCCACAATCAAGGTGACTTCAAAATGAA
TATATCCAATTTCTCAGATATTGGAAGAAATCACTCACTACCTCATCCCA
ATTACGAGTTAACCATTGTTTACACAGTCTCCAGTGTTGGTTGTTTTCTT
CTTCTGGTTGCTGCCCTTCTTGTGTTATCAATCATACAACTACCTACTGG
TATATTCGCTCAACGGAAATGGGCTGCTGGAGTTTTCTCATTTGCTTGTT
TTGCAACCGTGTTCCAAATGTTATCCTACCATGACGAACGAGAGAATCTT
ATAAATTCTTGGGGACGAATATTGGTGGAGGTATTAGGAATACTTTTAAT
GATTGTtggaacattttctttctttcaaagaaCAGAAAATCATCAACGAC
CGTTGAATTATAAAGACCGGTATCTGGCTTCTTTCTTGTTCTGGATCACT
TTATTATGTATATTTACTATGAGTTGTTTGATCATGGCTGGTGCTTTCGA
ACGAAAAGAATGGCTTTCTTTAGCAGGAAACATACTGGCAATTTTACAGA
AACTGACTCAAGCTGTTTTGTATAAGGCTAGGCTACAAAATAGGTGTGCC
ATACCGGAGAAGAAAATCGAAGCTATCTGGTATTTGAGGGCACTTTCTTT
GTTCAATCTACTCATGTGGATGAACGATTTAATTAATCTGAGCGaagtta
aagggacattaaagtagtaaaatgtaaacattgcgcaaaccacgtgtcat
taaagagaacaattaaaatcacgtgtcc Coding sequence (CDS) from alignment at scaffold_139:309807..310784 >TCONS_00047958 ID=TCONS_00047958|Name=TCONS_00047958|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_139:309807..310784 (Clytia hemisphaerica)
ATGAATATATCCAATTTCTCAGATATTGGAAGAAATCACTCACTACCTCA
TCCCAATTACGAGTTAACCATTGTTTACACAGTCTCCAGTGTTGGTTGTT
TTCTTCTTCTGGTTGCTGCCCTTCTTGTGTTATCAATCATACAACTACCT
ACTGGTATATTCGCTCAACGGAAATGGGCTGCTGGAGTTTTCTCATTTGC
TTGTTTTGCAACCGTGTTCCAAATGTTATCCTACCATGACGAACGAGAGA
ATCTTATAAATTCTTGGGGACGAATATTGGTGGAGGTATTAGGAATACTT
TTAATGATTGTtggaacattttctttctttcaaagaaCAGAAAATCATCA
ACGACCGTTGAATTATAAAGACCGGTATCTGGCTTCTTTCTTGTTCTGGA
TCACTTTATTATGTATATTTACTATGAGTTGTTTGATCATGGCTGGTGCT
TTCGAACGAAAAGAATGGCTTTCTTTAGCAGGAAACATACTGGCAATTTT
ACAGAAACTGACTCAAGCTGTTTTGTATAAGGCTAGGCTACAAAATAGGT
GTGCCATACCGGAGAAGAAAATCGAAGCTATCTGGTATTTGAGGGCACTT
TCTTTGTTCAATCTACTCATGTGGATGAACGATTTAATTAATCTGAGCGa
agttaaagggacattaaagtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047958-exon-scaffold_139-1491911889:309807..310784 | TCONS_00047958-exon-scaffold_139-1491911889:309807..310784 | Clytia hemisphaerica | exon |
| TCONS_00047958-exon-scaffold_139-1510915933:309807..310784 | TCONS_00047958-exon-scaffold_139-1510915933:309807..310784 | Clytia hemisphaerica | exon |
| TCONS_00047958-exon-scaffold_139-1575043694:309807..310784 | TCONS_00047958-exon-scaffold_139-1575043694:309807..310784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:309807..310784 . |
Blast
The following BLAST results are available for this feature:
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