TCONS_00047956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047956
Unique NameTCONS_00047956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047956 ID=TCONS_00047956|Name=TCONS_00047956|organism=Clytia hemisphaerica|type=transcript|length=486bp
AAAACTATTAACCatgcaaaatatgaaaaaaaaattctaaaaatagcaca
GACGGGGGTGATACCGACCAGGGGGTTACGTACTATAGTTTTCTCCATAC
AGGTTTTTAAAGACTTCTAAAACGTTTTagcaaaagatttttggtaTGGT
GGTTGGTATTCATCAAAGGCAGAggatgagtgaaaaaaaaattcataatt
atTTTCCAGGGGATCTGGAACCTAAAAAACGtgatttttgagatttagaa
CCAATGAcagatttttctgaattttttcttcACTCATCCTCTGCCAAATG
GTACAAGAAGcaatccctgaaaatttcatggaGCTAGCACttttcaatcc
cgagaaaaaccTGCATAGGCGTtagcaaacccccggaaacgcgTTTTTAG
NNNAGTTTGCGGTAATCTTGCGATAGcatcaaatttgggtgaaaaaagCC
ATATAAGTGTGTCAAAATGTTCATTGAAAGTCCAGC
Run BLAST on NCBI

transcript from alignment at scaffold_139:263167..263652

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047956 ID=TCONS_00047956|Name=TCONS_00047956|organism=Clytia hemisphaerica|type=transcript|length=486bp|location=Sequence derived from alignment at scaffold_139:263167..263652 (Clytia hemisphaerica)
GCTGGACTTTCAATGAACATTTTGACACACTTATATGGcttttttcaccc
aaatttgatgCTATCGCAAGATTACCGCAAACTNNNCTAAAAAcgcgttt
ccgggggtttgctaACGCCTATGCAggtttttctcgggattgaaaaGTGC
TAGCtccatgaaattttcagggattgCTTCTTGTACCATTTGGCAGAGGA
TGAGTgaagaaaaaattcagaaaaatctgTCATTGGttctaaatctcaaa
aatcaCGTTTTTTAGGTTCCAGATCCCCTGGAAAataattatgaattttt
ttttcactcatccTCTGCCTTTGATGAATACCAACCACCAtaccaaaaat
cttttgctAAAACGTTTTAGAAGTCTTTAAAAACCTGTATGGAGAAAACT
ATAGTACGTAACCCCCTGGTCGGTATCACCCCCGTCtgtgctatttttag
aatttttttttcatattttgcatGGTTAATAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030517XLOC_030517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047956-exon-scaffold_139-1491911889:263167..263652TCONS_00047956-exon-scaffold_139-1491911889:263167..263652Clytia hemisphaericaexon
TCONS_00047956-exon-scaffold_139-1510915933:263167..263652TCONS_00047956-exon-scaffold_139-1510915933:263167..263652Clytia hemisphaericaexon
TCONS_00047956-exon-scaffold_139-1575043694:263167..263652TCONS_00047956-exon-scaffold_139-1575043694:263167..263652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:263167..263652 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.185927	0	0	1.3774	0.896714	6.62888	5.30758	0.527969	0.675144	0	1.10434	0.590343	0	0.161804	0.636586	0.161212	0.263102	0.213419	0.202013	0.187189	0.932962	0.650372	0.425796	1.58379	3.55888	0.421448	2.64056	1.34252	1.12336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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