TCONS_00047953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047953
Unique NameTCONS_00047953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length990

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047953 ID=TCONS_00047953|Name=TCONS_00047953|organism=Clytia hemisphaerica|type=transcript|length=990bp
CGAACAATCAATCAAACATAAATCACATGGAAACATGTATGTATAACTTG
TAATCCATATATCATTGACATCTCAAGTTACTCATGTATATAACTCGAAA
GCTTTAAATTTTCTATGGCATCTATCTGTTTCCTAATTCAGAAATCTGAG
GCAAGGAGTGAGGAAGGTGTGAAAGAAAGATGATTTCgtttgtttttaag
attttctgcCTTATTGCAGTAACATGTGCTCTTCCAAGACATCATGAATC
CAATCCTTGCAGTCAAGGAGCAGAGTACTGGTGTCAAAATGAAAAGACAG
CTACAGAATGCGGTGTCTTGGAATTTTGTAAATTAACACATTCTAATGAA
ATGGCTGCCACAGATGCAAAACCAATTCAAATCGATTTATACTATGAAGC
TTTCTGTGGAGGATGTCGAAAGTTCATATTGGAGCAGTTATACCCGACCT
ACCAAAAACTGTATTCGACAGGAATCTTCGAGATCAATTTATACCCATAT
GGAAACGCACATGAAAGTCAGAAAGGTGATAAATGGGTGTTCGATTGCCA
GCATGGAGAAGAAGAATGCCAGATGAACTTGATCGAGACATGCGCATTGC
ATTTATTAAGCCATCCTGATCAATTCATGCCTTATATCAATTGCGTTGAA
AATAAACCATCCATTGCCAACGCTCAAAAATGTGCTCACGACCTCAAAGT
AGACTGGGAGCCAATCTCTAAATGCTTCAATGGTAGTGAAGGTAACTTCT
TGGAGCATCAAGTTGCCCAAAAAACGGAAGCTTTGGTACCAAAACACACC
TATGTTCCTTGGATAGTAGCAGATGGTCACCATGATGAAACAATGCAAGT
CTACATTCAAACAGGGCTTCAATATTGGCTTTGTGAGCATTACAAAGGTA
CCAAACCCAAAGAATGTGACCAAgctatgaaaaatgaaaagatatgCTAT
AAGGACAGAGTTTAGTATCGTTATTATTGTCATACCTAAG
Run BLAST on NCBI

protein sequence of TCONS_00047953-protein

>TCONS_00047953-protein ID=TCONS_00047953-protein|Name=TCONS_00047953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MISFVFKIFCLIAVTCALPRHHESNPCSQGAEYWCQNEKTATECGVLEFC
KLTHSNEMAATDAKPIQIDLYYEAFCGGCRKFILEQLYPTYQKLYSTGIF
EINLYPYGNAHESQKGDKWVFDCQHGEEECQMNLIETCALHLLSHPDQFM
PYINCVENKPSIANAQKCAHDLKVDWEPISKCFNGSEGNFLEHQVAQKTE
ALVPKHTYVPWIVADGHHDETMQVYIQTGLQYWLCEHYKGTKPKECDQAM
KNEKICYKDRV
Run BLAST on NCBI

transcript from alignment at scaffold_139:237418..238407

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047953 ID=TCONS_00047953|Name=TCONS_00047953|organism=Clytia hemisphaerica|type=transcript|length=990bp|location=Sequence derived from alignment at scaffold_139:237418..238407 (Clytia hemisphaerica)
CTTAGGTATGACAATAATAACGATACTAAACTCTGTCCTTATAGcatatc
ttttcatttttcatagcTTGGTCACATTCTTTGGGTTTGGTACCTTTGTA
ATGCTCACAAAGCCAATATTGAAGCCCTGTTTGAATGTAGACTTGCATTG
TTTCATCATGGTGACCATCTGCTACTATCCAAGGAACATAGGTGTGTTTT
GGTACCAAAGCTTCCGTTTTTTGGGCAACTTGATGCTCCAAGAAGTTACC
TTCACTACCATTGAAGCATTTAGAGATTGGCTCCCAGTCTACTTTGAGGT
CGTGAGCACATTTTTGAGCGTTGGCAATGGATGGTTTATTTTCAACGCAA
TTGATATAAGGCATGAATTGATCAGGATGGCTTAATAAATGCAATGCGCA
TGTCTCGATCAAGTTCATCTGGCATTCTTCTTCTCCATGCTGGCAATCGA
ACACCCATTTATCACCTTTCTGACTTTCATGTGCGTTTCCATATGGGTAT
AAATTGATCTCGAAGATTCCTGTCGAATACAGTTTTTGGTAGGTCGGGTA
TAACTGCTCCAATATGAACTTTCGACATCCTCCACAGAAAGCTTCATAGT
ATAAATCGATTTGAATTGGTTTTGCATCTGTGGCAGCCATTTCATTAGAA
TGTGTTAATTTACAAAATTCCAAGACACCGCATTCTGTAGCTGTCTTTTC
ATTTTGACACCAGTACTCTGCTCCTTGACTGCAAGGATTGGATTCATGAT
GTCTTGGAAGAGCACATGTTACTGCAATAAGgcagaaaatcttaaaaaca
aacGAAATCATCTTTCTTTCACACCTTCCTCACTCCTTGCCTCAGATTTC
TGAATTAGGAAACAGATAGATGCCATAGAAAATTTAAAGCTTTCGAGTTA
TATACATGAGTAACTTGAGATGTCAATGATATATGGATTACAAGTTATAC
ATACATGTTTCCATGTGATTTATGTTTGATTGATTGTTCG

Coding sequence (CDS) from alignment at scaffold_139:237418..238407

>TCONS_00047953 ID=TCONS_00047953|Name=TCONS_00047953|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_139:237418..238407 (Clytia hemisphaerica)
CTAAACTCTGTCCTTATAGcatatcttttcatttttcatagcTTGGTCAC
ATTCTTTGGGTTTGGTACCTTTGTAATGCTCACAAAGCCAATATTGAAGC
CCTGTTTGAATGTAGACTTGCATTGTTTCATCATGGTGACCATCTGCTAC
TATCCAAGGAACATAGGTGTGTTTTGGTACCAAAGCTTCCGTTTTTTGGG
CAACTTGATGCTCCAAGAAGTTACCTTCACTACCATTGAAGCATTTAGAG
ATTGGCTCCCAGTCTACTTTGAGGTCGTGAGCACATTTTTGAGCGTTGGC
AATGGATGGTTTATTTTCAACGCAATTGATATAAGGCATGAATTGATCAG
GATGGCTTAATAAATGCAATGCGCATGTCTCGATCAAGTTCATCTGGCAT
TCTTCTTCTCCATGCTGGCAATCGAACACCCATTTATCACCTTTCTGACT
TTCATGTGCGTTTCCATATGGGTATAAATTGATCTCGAAGATTCCTGTCG
AATACAGTTTTTGGTAGGTCGGGTATAACTGCTCCAATATGAACTTTCGA
CATCCTCCACAGAAAGCTTCATAGTATAAATCGATTTGAATTGGTTTTGC
ATCTGTGGCAGCCATTTCATTAGAATGTGTTAATTTACAAAATTCCAAGA
CACCGCATTCTGTAGCTGTCTTTTCATTTTGACACCAGTACTCTGCTCCT
TGACTGCAAGGATTGGATTCATGATGTCTTGGAAGAGCACATGTTACTGC
AATAAGgcagaaaatcttaaaaacaaacGAAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030514XLOC_030514Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047953-proteinTCONS_00047953-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047953-exon-scaffold_139-1491911889:237418..238407TCONS_00047953-exon-scaffold_139-1491911889:237418..238407Clytia hemisphaericaexon
TCONS_00047953-exon-scaffold_139-1510915933:237418..238407TCONS_00047953-exon-scaffold_139-1510915933:237418..238407Clytia hemisphaericaexon
TCONS_00047953-exon-scaffold_139-1575043694:237418..238407TCONS_00047953-exon-scaffold_139-1575043694:237418..238407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:237418..238407 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.181704	0.132893	0.617204	0.503198	0.0612596	0.290449	0.0584024	0.273378	3.56001	4.2674	5.79886	2.81358	9.06343	16.5659	121.724	79.5839	82.1497	76.0918	297.604	187.924	155.962	148.589	156.566	181.407	153.485	116.959	18.4996	51.585	383.893	268.97
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003119SAP_A
IPR004911Interferon-induced_GILT
Blast
[Close]
BLAST of TCONS_00047953 vs. Swiss-Prot (Human)
Match: GILT (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 2.429e-36
Identity = 74/205 (36.10%), Postives = 107/205 (52.20%), Query Frame = 3 
Query:  351 MAATDAKPIQIDLYYEAFCGGCRKFILEQLYPTYQKLYSTGIFEINLYPYGNAHESQKGDKWVFDCQHGEEECQMNLIETCALHLLSHPDQFMPYINCVENKPSIANAQKCAHDL---KVDWEPISKCFNGSEGNFLEHQVAQKTEALVPKHTYVPWIVADGHHDETMQVYIQTGLQYWLCEHYKGTKPKECDQAMKNEK-ICYK 953
            +  ++A  + + LYYEA CGGCR F++ +L+PT+  L    I  + L PYGNA E     +W F CQHGEEEC+ N +E C L  L     F+  I C+E    +  +      L    +  + I +C  G  G  L H  AQ+T+AL P H YVPW+  +G   E      QT L   +C+ Y+G KP  C  +  + + +C+K
Sbjct:   54 LKKSNAPLVNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDELDMELAFL-TIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLED-----QTQLLTLVCQLYQGKKPDVCPSSTSSLRSVCFK 250
The following BLAST results are available for this feature:
BLAST of TCONS_00047953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GILT2.429e-3636.10Gamma-interferon-inducible lysosomal thiol reducta... [more]
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