TCONS_00047948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047948
Unique NameTCONS_00047948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047948 ID=TCONS_00047948|Name=TCONS_00047948|organism=Clytia hemisphaerica|type=transcript|length=466bp
ACAAGAGAAACAGCCTACTTTCATTAGCATCGGAAACACTGAGCGGAAAG
ACCGTAATGAATTTGGAATGAAACAATTTGGAATGAAACAGTTTCTCCCG
AACCAGACAGTCAATTGGTTCATTGATAAAGCGAAAGAAGAATTAAAGGA
TATTTTCAATTCAACGGAAGATATTAGCAACAAAATAAATCAGTTGACCA
CTCTCTATGATGCATTTTGGTTCAGTCGGCAAATCTATGCTGGTTACAAA
ATCGAACAAAAAGCAGGTAGTCAAAATATgagagaaatcagcaaaaatgt
tttccaaTATGTCAGAAAGACATCATCTCCTGTCATCAAATATTCAACAG
GGGACGGAGTTGTGCGAGAGATGGTGATCGACCGAATACGATTCCAGCAT
CAGAAAGTCGAAACCCCGTCTGTAATTTGTTACCCAGGCTGGCGTAAGAA
GTATGGTGTCATTTCA
Run BLAST on NCBI

protein sequence of TCONS_00047948-protein

>TCONS_00047948-protein ID=TCONS_00047948-protein|Name=TCONS_00047948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
QEKQPTFISIGNTERKDRNEFGMKQFGMKQFLPNQTVNWFIDKAKEELKD
IFNSTEDISNKINQLTTLYDAFWFSRQIYAGYKIEQKAGSQNMREISKNV
FQYVRKTSSPVIKYSTGDGVVREMVIDRIRFQHQKVETPSVICYPGWRKK
YGVIS
Run BLAST on NCBI

transcript from alignment at scaffold_139:113360..113825

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047948 ID=TCONS_00047948|Name=TCONS_00047948|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at scaffold_139:113360..113825 (Clytia hemisphaerica)
TGAAATGACACCATACTTCTTACGCCAGCCTGGGTAACAAATTACAGACG
GGGTTTCGACTTTCTGATGCTGGAATCGTATTCGGTCGATCACCATCTCT
CGCACAACTCCGTCCCCTGTTGAATATTTGATGACAGGAGATGATGTCTT
TCTGACATAttggaaaacatttttgctgatttctctcATATTTTGACTAC
CTGCTTTTTGTTCGATTTTGTAACCAGCATAGATTTGCCGACTGAACCAA
AATGCATCATAGAGAGTGGTCAACTGATTTATTTTGTTGCTAATATCTTC
CGTTGAATTGAAAATATCCTTTAATTCTTCTTTCGCTTTATCAATGAACC
AATTGACTGTCTGGTTCGGGAGAAACTGTTTCATTCCAAATTGTTTCATT
CCAAATTCATTACGGTCTTTCCGCTCAGTGTTTCCGATGCTAATGAAAGT
AGGCTGTTTCTCTTGT

Coding sequence (CDS) from alignment at scaffold_139:113360..113825

>TCONS_00047948 ID=TCONS_00047948|Name=TCONS_00047948|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_139:113360..113825 (Clytia hemisphaerica)
TGAAATGACACCATACTTCTTACGCCAGCCTGGGTAACAAATTACAGACG
GGGTTTCGACTTTCTGATGCTGGAATCGTATTCGGTCGATCACCATCTCT
CGCACAACTCCGTCCCCTGTTGAATATTTGATGACAGGAGATGATGTCTT
TCTGACATAttggaaaacatttttgctgatttctctcATATTTTGACTAC
CTGCTTTTTGTTCGATTTTGTAACCAGCATAGATTTGCCGACTGAACCAA
AATGCATCATAGAGAGTGGTCAACTGATTTATTTTGTTGCTAATATCTTC
CGTTGAATTGAAAATATCCTTTAATTCTTCTTTCGCTTTATCAATGAACC
AATTGACTGTCTGGTTCGGGAGAAACTGTTTCATTCCAAATTGTTTCATT
CCAAATTCATTACGGTCTTTCCGCTCAGTGTTTCCGATGCTAATGAAAGT
AGGCTGTTTCTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030509XLOC_030509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047948-exon-scaffold_139-1491911889:113360..113825TCONS_00047948-exon-scaffold_139-1491911889:113360..113825Clytia hemisphaericaexon
TCONS_00047948-exon-scaffold_139-1510915933:113360..113825TCONS_00047948-exon-scaffold_139-1510915933:113360..113825Clytia hemisphaericaexon
TCONS_00047948-exon-scaffold_139-1575043694:113360..113825TCONS_00047948-exon-scaffold_139-1575043694:113360..113825Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047948-proteinTCONS_00047948-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:113360..113825 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.276091	0.134616	0.312605	0	0.186162	0.294216	0	0.332308	1.74493	0	1.25873	0.183875	0.27543	0.190691	0	0	0	0.318653	0.733728	0.153559	0	0.390613	0.15828	0.1439	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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