TCONS_00047942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047942
Unique NameTCONS_00047942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047942 ID=TCONS_00047942|Name=TCONS_00047942|organism=Clytia hemisphaerica|type=transcript|length=827bp
AACCTGGTTGTGCATATAAAATGTTTATTAGAAGTTATATCGGAATTTTA
AGGGTTAAAAGATCTGCATCTCACTCATTATACAGATTTATAATCTGTTC
ATTAAAATCTTCTTTATCGATAACAACTTTCGAGTAACCATTTATTTCTA
TAACATCAAAAGCAATCAATATAAATGCTTGTAGATAACCATAATTCAGT
GCACGGATTAACAATTAGTTGTTTTTGTTGAGCTAATGCTTAATGCCATG
GCATCGTAATTCATATTTAGtagacactttttttataagaaccagtaaat
ctTTTATTTCCATGCTGAGGCATGGCTGTTTTTGAAATTATGTTCTTATT
ATAATCATTTTTTGCTTTGGTTGTGACTAACAAAACTTTGTAACTTAGGT
CATTTAAAGAGGCTGGTGACATCTAGCATTCCGGGCTTTACAAAATCTAT
GGTTTGATTGCCTAAAAACATCTTAtgagattgacgtcactttcaTGTTG
GCTTCAATGTTGAATGCATTTGcgtaatcatgttggatgaataTGGTTGA
CGTTTCtgcgcaaatgacttttcatgcaacttttcgaatttGTCCACGTG
ACTTTCATCCAACATTTCGtccaaaaaagaatttcaaatgttggatcaaa
tgttggatcaaatgttggttGCATTTGCACCGGACTTTAACAAAACTAAC
TCGAATAAATCGACTGGAAATGACGTCAAAGCGTGACTTTGACATTAATC
TATGATATATGTTGAGAAATCGATTAAATTTGTAAAATGTTTGGGGTCAG
TTTTTCAGTCCTAAAATAGTTTGCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_139:31656..32482

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047942 ID=TCONS_00047942|Name=TCONS_00047942|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at scaffold_139:31656..32482 (Clytia hemisphaerica)
CTTGCAAACTATTTTAGGACTGAAAAACTGACCCCAAACATTTTACAAAT
TTAATCGATTTCTCAACATATATCATAGATTAATGTCAAAGTCACGCTTT
GACGTCATTTCCAGTCGATTTATTCGAGTTAGTTTTGTTAAAGTCCGGTG
CAAATGCaaccaacatttgatccaacatttgatccaacatttgaaattct
tttttggaCGAAATGTTGGATGAAAGTCACGTGGACaaattcgaaaagtt
gcatgaaaagtcatttgcgcaGAAACGTCAACCAtattcatccaacatga
ttacgCAAATGCATTCAACATTGAAGCCAACAtgaaagtgacgtcaatct
caTAAGATGTTTTTAGGCAATCAAACCATAGATTTTGTAAAGCCCGGAAT
GCTAGATGTCACCAGCCTCTTTAAATGACCTAAGTTACAAAGTTTTGTTA
GTCACAACCAAAGCAAAAAATGATTATAATAAGAACATAATTTCAAAAAC
AGCCATGCCTCAGCATGGAAATAAAagatttactggttcttataaaaaaa
gtgtctaCTAAATATGAATTACGATGCCATGGCATTAAGCATTAGCTCAA
CAAAAACAACTAATTGTTAATCCGTGCACTGAATTATGGTTATCTACAAG
CATTTATATTGATTGCTTTTGATGTTATAGAAATAAATGGTTACTCGAAA
GTTGTTATCGATAAAGAAGATTTTAATGAACAGATTATAAATCTGTATAA
TGAGTGAGATGCAGATCTTTTAACCCTTAAAATTCCGATATAACTTCTAA
TAAACATTTTATATGCACAACCAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030503XLOC_030503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047942-exon-scaffold_139-1491911889:31656..32482TCONS_00047942-exon-scaffold_139-1491911889:31656..32482Clytia hemisphaericaexon
TCONS_00047942-exon-scaffold_139-1510915933:31656..32482TCONS_00047942-exon-scaffold_139-1510915933:31656..32482Clytia hemisphaericaexon
TCONS_00047942-exon-scaffold_139-1575043694:31656..32482TCONS_00047942-exon-scaffold_139-1575043694:31656..32482Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:31656..32482 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287037	0.391868	0.129999	0.254368	0.464502	0.30588	0.59045	0.276386	0.435385	0.479373	0.174484	0.114699	0.305439	0.475802	0.391173	0.349824	0.775719	0.485886	0.366152	0.255434	0.555047	0.406099	0.197466	0.0598419	0.246543	0.550084	0.157434	0.588061	0.446024	0.843937
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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