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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047941 ID=TCONS_00047941|Name=TCONS_00047941|organism=Clytia hemisphaerica|type=transcript|length=2200bp
GAGAATGGTTGCAATGAATTCTCGTTCGTTTGACATGAATTTGGTTAGTC
TGAAGCCTCCCGAATGACACATTTTCGTTATGTCAGAAGTCGTTTGGATG
GCGGTTGATACATTTGAATACGACTTAAGAAGATCGTCGATATAGAAGTT
TCGATATAACGACTTGGATGCTTCGTCACCGTTCGTTTCTTTGTTGGCGT
CAGTTGTCTGTCGTAACGCGTAGTTGGCACAGCTAGGTGACGATGTGGCG
CCAAATAGATGAACACACATTTGGTAGTCGACGGGCTCCTTCGATAGATC
GCCATCTGGCCACCAAATGAATCTAAGGTTGTCGTGAAATTCTTCTGGTA
CACGTACTTGGTAGAACATTGATTCGATGTCTGCCATGACTGCCACTGGA
TATTGTCGAAATCTTAACAGCACTCCGCTGAGTTGATTGGTGAGGTCTGG
TCCTTGGATCAGTTCTTGGTTGAGAGAGTATCCTTGATATTTCGCTGTGC
AATCGAATACGACGCGCATTTTGTCTGGTTTGCgcgggtggtatacacca
tggtgAGGGATGTACCATGTCTTTTTTGGTGTTGGTGAATTTGAAGCAAG
TTTGACGTAGCCTTTTTCGATATTTGTTTGCATAAAGGCTTTGTAATCGT
TGAACATTCGATCGTTCTTTAGAAGTCGCTGTTTTAACCATGCTGCTCGT
TGAAGACATTGCGATCGATTGTTGGGTATTATCTTGTGTGGATCTCTCAG
TGGAAGTGGTAGGTAGTAGTGTCCATCCTTATATTTGATGTCTTTCATGA
TTTCGAGAAAGCGTTTGTCGTCTTGAGACAGGGATATAAGCTGGCTGGAT
TCGTGGAAGTCTAAGGTGGAAGTTCATGCCTTGATGATCATTTCCTTTAA
CGACAAATCTTTGAATGACTCTCTGACTTGAAAGTATTGATCGGTTCGAT
CTTGAACTTGAATTCGATAACAAGACGTGCTTGATGAATTTGACTTGACT
TGACCAGTGNTGAACTTGAATTCGATGACAAGACGTGCTTGATGAATTTG
ACTTGACTTGACCAGTGATGCACCAACCAAGTCGTGATCTGAAAGCAAAT
GGACCATTGTCTCGACTATGAACGATTTCCATTGGTTCAAGAGATTTGGG
ACAGTTTGACCCAATGAGTAAGCCAACTTTTCCTCTGATTTTAGGTAAGT
GATTGGCGATTTGGTTGAGGTAAGGCCATGCTTGTAGCTGAGCGGGTGTA
GGAATATCAAACTCGTCTGAAGGTAGTGTTNTTGAGGTAAGGCCATGGTT
GTAGCTGAGCGGGTGTAGGAATATCAGCCTCGTCTGAAGGTAGTGTTGAT
CGGCTGTACACTTTCGGAAGCTTGATTGACAAGGGTATAGGTTGATCAAT
GGCACAAACGCAGAGACCATTGATTATAGAGCTTCTCTTGGTTGTGGTTC
CAGATACAGTGTTGATTCCAAGGTTGGTATCGGTGGATGGCGCATCTAGG
TTGGAAAGGACGTCGTCGGTTACGAAGGTAGCTTGTGAGCCTTTGTCAAG
TAAAGCAAGTGTTTCGACGTAGATGTTTGGATTGCTGGTATGATGGACCT
TCACTGTAACGATGCAAAGGGTAGCTAATTCGTTGACAcctgtcgaacaa
gtggtcaGTGTCGTGGTCGTAGTTTCTGAAGTTGGTGATGGATTCGTAGT
TGATGGTGGGGTAGTTGCTGGTGGACGAGTTGTTGTCCTTGGTTGGTAGC
TTGGATCATGAATCATCTGTTTCGTTTGCAGACCTGACATTTGCGTTTCT
TTGGGCAGGTCTTGGCTCGATGAGAATCTGATGTTCGATTAAGACAGCAG
AAGCACAATCTCCACTTGTAGATGNTTCTTTGGGCAGGTCTTGGCTCGAT
GAGAATCTGATGTTCGATTAAGACAGCAGAAGCACAATCTCCACTTGTAG
ATGAACTTTCTTCTAGACGGCAGGTCTAGTGCAAGGTACTGTTGACACCT
CTCAAGATCGTGTGATGACTTCTTGCAGCATAAGCACAATTTCTCGTCAA
CACCGGTTcgaaatgactttggaggtctCGGTTTGTTTGAATCTGACGGT
GCTCTGTTCAACATCTCACTGATTGCTCCTCTCGAGAAGAAAGGATCACT
CATGACTACCGTTTCTTCTGATACAAAGCTGATAAAATCTTCCAGCTCTG Run BLAST on NCBI protein sequence of TCONS_00047941-protein >TCONS_00047941-protein ID=TCONS_00047941-protein|Name=TCONS_00047941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MKDIKYKDGHYYLPLPLRDPHKIIPNNRSQCLQRAAWLKQRLLKNDRMFN
DYKAFMQTNIEKGYVKLASNSPTPKKTWYIPHHGVYHPRKPDKMRVVFDC
TAKYQGYSLNQELIQGPDLTNQLSGVLLRFRQYPVAVMADIESMFYQVRV
PEEFHDNLRFIWWPDGDLSKEPVDYQMCVHLFGATSSPSCANYALRQTTD
ANKETNGDEASKSLYRNFYIDDLLKSYSNVSTAIQTTSDITKMCHSGGFR
LTKFMSNEREFIATIL Run BLAST on NCBI transcript from alignment at scaffold_139:26204..28403 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047941 ID=TCONS_00047941|Name=TCONS_00047941|organism=Clytia hemisphaerica|type=transcript|length=2200bp|location=Sequence derived from alignment at scaffold_139:26204..28403 (Clytia hemisphaerica)
CAGAGCTGGAAGATTTTATCAGCTTTGTATCAGAAGAAACGGTAGTCATG
AGTGATCCTTTCTTCTCGAGAGGAGCAATCAGTGAGATGTTGAACAGAGC
ACCGTCAGATTCAAACAAACCGagacctccaaagtcatttcgAACCGGTG
TTGACGAGAAATTGTGCTTATGCTGCAAGAAGTCATCACACGATCTTGAG
AGGTGTCAACAGTACCTTGCACTAGACCTGCCGTCTAGAAGAAAGTTCAT
CTACAAGTGGAGATTGTGCTTCTGCTGTCTTAATCGAACATCAGATTCTC
ATCGAGCCAAGACCTGCCCAAAGAANCATCTACAAGTGGAGATTGTGCTT
CTGCTGTCTTAATCGAACATCAGATTCTCATCGAGCCAAGACCTGCCCAA
AGAAACGCAAATGTCAGGTCTGCAAACGAAACAGATGATTCATGATCCAA
GCTACCAACCAAGGACAACAACTCGTCCACCAGCAACTACCCCACCATCA
ACTACGAATCCATCACCAACTTCAGAAACTACGACCACGACACtgaccac
ttgttcgacaggTGTCAACGAATTAGCTACCCTTTGCATCGTTACAGTGA
AGGTCCATCATACCAGCAATCCAAACATCTACGTCGAAACACTTGCTTTA
CTTGACAAAGGCTCACAAGCTACCTTCGTAACCGACGACGTCCTTTCCAA
CCTAGATGCGCCATCCACCGATACCAACCTTGGAATCAACACTGTATCTG
GAACCACAACCAAGAGAAGCTCTATAATCAATGGTCTCTGCGTTTGTGCC
ATTGATCAACCTATACCCTTGTCAATCAAGCTTCCGAAAGTGTACAGCCG
ATCAACACTACCTTCAGACGAGGCTGATATTCCTACACCCGCTCAGCTAC
AACCATGGCCTTACCTCAANAACACTACCTTCAGACGAGTTTGATATTCC
TACACCCGCTCAGCTACAAGCATGGCCTTACCTCAACCAAATCGCCAATC
ACTTACCTAAAATCAGAGGAAAAGTTGGCTTACTCATTGGGTCAAACTGT
CCCAAATCTCTTGAACCAATGGAAATCGTTCATAGTCGAGACAATGGTCC
ATTTGCTTTCAGATCACGACTTGGTTGGTGCATCACTGGTCAAGTCAAGT
CAAATTCATCAAGCACGTCTTGTCATCGAATTCAAGTTCANCACTGGTCA
AGTCAAGTCAAATTCATCAAGCACGTCTTGTTATCGAATTCAAGTTCAAG
ATCGAACCGATCAATACTTTCAAGTCAGAGAGTCATTCAAAGATTTGTCG
TTAAAGGAAATGATCATCAAGGCATGAACTTCCACCTTAGACTTCCACGA
ATCCAGCCAGCTTATATCCCTGTCTCAAGACGACAAACGCTTTCTCGAAA
TCATGAAAGACATCAAATATAAGGATGGACACTACTACCTACCACTTCCA
CTGAGAGATCCACACAAGATAATACCCAACAATCGATCGCAATGTCTTCA
ACGAGCAGCATGGTTAAAACAGCGACTTCTAAAGAACGATCGAATGTTCA
ACGATTACAAAGCCTTTATGCAAACAAATATCGAAAAAGGCTACGTCAAA
CTTGCTTCAAATTCACCAACACCAAAAAAGACATGGTACATCCCTcacca
tggtgtataccacccgcGCAAACCAGACAAAATGCGCGTCGTATTCGATT
GCACAGCGAAATATCAAGGATACTCTCTCAACCAAGAACTGATCCAAGGA
CCAGACCTCACCAATCAACTCAGCGGAGTGCTGTTAAGATTTCGACAATA
TCCAGTGGCAGTCATGGCAGACATCGAATCAATGTTCTACCAAGTACGTG
TACCAGAAGAATTTCACGACAACCTTAGATTCATTTGGTGGCCAGATGGC
GATCTATCGAAGGAGCCCGTCGACTACCAAATGTGTGTTCATCTATTTGG
CGCCACATCGTCACCTAGCTGTGCCAACTACGCGTTACGACAGACAACTG
ACGCCAACAAAGAAACGAACGGTGACGAAGCATCCAAGTCGTTATATCGA
AACTTCTATATCGACGATCTTCTTAAGTCGTATTCAAATGTATCAACCGC
CATCCAAACGACTTCTGACATAACGAAAATGTGTCATTCGGGAGGCTTCA
GACTAACCAAATTCATGTCAAACGAACGAGAATTCATTGCAACCATTCTC
Coding sequence (CDS) from alignment at scaffold_139:26204..28403 >TCONS_00047941 ID=TCONS_00047941|Name=TCONS_00047941|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_139:26204..28403 (Clytia hemisphaerica)
ATGAAAGACATCAAATATAAGGATGGACACTACTACCTACCACTTCCACT
GAGAGATCCACACAAGATAATACCCAACAATCGATCGCAATGTCTTCAAC
GAGCAGCATGGTTAAAACAGCGACTTCTAAAGAACGATCGAATGTTCAAC
GATTACAAAGCCTTTATGCAAACAAATATCGAAAAAGGCTACGTCAAACT
TGCTTCAAATTCACCAACACCAAAAAAGACATGGTACATCCCTcaccatg
gtgtataccacccgcGCAAACCAGACAAAATGCGCGTCGTATTCGATTGC
ACAGCGAAATATCAAGGATACTCTCTCAACCAAGAACTGATCCAAGGACC
AGACCTCACCAATCAACTCAGCGGAGTGCTGTTAAGATTTCGACAATATC
CAGTGGCAGTCATGGCAGACATCGAATCAATGTTCTACCAAGTACGTGTA
CCAGAAGAATTTCACGACAACCTTAGATTCATTTGGTGGCCAGATGGCGA
TCTATCGAAGGAGCCCGTCGACTACCAAATGTGTGTTCATCTATTTGGCG
CCACATCGTCACCTAGCTGTGCCAACTACGCGTTACGACAGACAACTGAC
GCCAACAAAGAAACGAACGGTGACGAAGCATCCAAGTCGTTATATCGAAA
CTTCTATATCGACGATCTTCTTAAGTCGTATTCAAATGTATCAACCGCCA
TCCAAACGACTTCTGACATAACGAAAATGTGTCATTCGGGAGGCTTCAGA
CTAACCAAATTCATGTCAAACGAACGAGAATTCATTGCAACCATTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047941-exon-scaffold_139-1491911889:26204..28403 | TCONS_00047941-exon-scaffold_139-1491911889:26204..28403 | Clytia hemisphaerica | exon |
| TCONS_00047941-exon-scaffold_139-1510915933:26204..28403 | TCONS_00047941-exon-scaffold_139-1510915933:26204..28403 | Clytia hemisphaerica | exon |
| TCONS_00047941-exon-scaffold_139-1575043694:26204..28403 | TCONS_00047941-exon-scaffold_139-1575043694:26204..28403 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:26204..28403 . |
Blast
The following BLAST results are available for this feature:
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