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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047937 ID=TCONS_00047937|Name=TCONS_00047937|organism=Clytia hemisphaerica|type=transcript|length=1304bp
GGCTGTACACTTTCGGAAGCTTGATTGACAAGGGTATAGGTTGATCAGTG
GCACAAACGCAGAGACCATTGATTATAGAGCTTCTCTCGGTTGTGGTTCC
AGATACAGTGTTGATTTCAAGGTTAGTATCGGTGGATGGCGCATCTAGGT
TGGAAAGGACGTCGTCGGTTACGAAGGTAGGTTGTGAGCCGTTANAGGTT
AGTATCGGTGGATGGCGCATCTAGGTTGGAAAGGACGTCGTCGGTTACGA
AGGTAGCTTGTGAGCCGTTGTCAAGTAAAGCAAGTGTTTCGACGTAGATG
TTTGGATTGCTGGTATGATGGACCTTCACTGCAACGATGCAAAGGGTAGC
TAATTCGTTGACAcctgtcgaacaagtggtcaGTGTCGTGGTCGTAGTTT
CTGAAGTTGGTGATGGATTCGTAGTTGCTGGTGGGGTAGTTGCTGGTGGG
GTAGTTGCTGGTGGATGAGTTGTTGTCCTTGGTTGGTAGCTTGGATCATG
AAGAGTGGTTGGATGATTTCGTTTGCAGACCTGACATTTGCGTTTCTTTG
GGCAGGTCTTGGCTCGATGAGAATCTGATGTTCGATTAAGACAGCAGAAG
CACAATCTCCACTTGTAGATGAACTTTCTTCTAGACGGCATGTCTAGTGC
AAGGTACANGCAGGTCTTGGCTCGATGAGAATCTGATGTTCGATTAAGAC
AGCAGAAGCACAATCTCCACTTGTAGATGAACTTTCTTCTAGACGGCAGG
TCTAGTGCAAGGTACTGTTGACACTTCTCAAGATCGTGTGATGACTTCTT
GCAGCATAAGCACAATTTCTCGTCAACACCGGTTcgaaatgactttggag
gtctCGGTTTGTTCGAATCTGACGGTGCTCTGTTCAACATCTCATTGATT
GCTCCTCTCGAGAAGAAAGGATCACTCATGACTACCGTTTCTTCTGATAC
AAAGCTGATAAAATCTTCCAGCTCTGCCTCTTTATCTTGCCTTCTGGACT
GATAGACTTTTCTGTTCCATCTCTCTTGTAGGAATGGTGGCATCTTGCTT
TGAAGTAGTTGAATCAGTTCTAAGTTGCACTGACTGTTCTTGCCAATTGC
TCGCATCGAAGCTTGATACTTGATCAAATAGTTTTCGAATCTGTCGAATG
CTTGTGTGTCATTAGCCTTTAGCTTTGGCCATAACACTAACTGTTTTCTG
TATTCACTTGCTATCGTATGTGGACTGCCATACTTCTTCTTCAATAACTC
CTTTGCTTGTTGATAACAATCTTTGTCGTCTAGGTAAACACACGACTTGA
CCAA Run BLAST on NCBI protein sequence of TCONS_00047937-protein >TCONS_00047937-protein ID=TCONS_00047937-protein|Name=TCONS_00047937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
LVKSCVYLDDKDCYQQAKELLKKKYGSPHTIASEYRKQLVLWPKLKANDT
QAFDRFENYLIKYQASMRAIGKNSQCNLELIQLLQSKMPPFLQERWNRKV
YQSRRQDKEAELEDFISFVSEETVVMSDPFFSRGAINEMLNRAPSDSNKP
RPPKSFRTGVDEKLCLCCKKSSHDLEKCQQYLALDLPSRRKFIYKWRLCF
CCLNRTSDSHRAKTCXYLALDMPSRRKFIYKWRLCFCCLNRTSDSHRAKT
CPKKRKCQVCKRNHPTTLHDPSYQPRTTTHPPATTPPATTPPATTNPSPT
SETTTTTLTTCSTGVNELATLCIVAVKVHHTSNPNIYVETLALLDNGSQA
TFVTDDVLSNLDAPSTDTNX Run BLAST on NCBI transcript from alignment at scaffold_139:14925..16228 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047937 ID=TCONS_00047937|Name=TCONS_00047937|organism=Clytia hemisphaerica|type=transcript|length=1304bp|location=Sequence derived from alignment at scaffold_139:14925..16228 (Clytia hemisphaerica)
TTGGTCAAGTCGTGTGTTTACCTAGACGACAAAGATTGTTATCAACAAGC
AAAGGAGTTATTGAAGAAGAAGTATGGCAGTCCACATACGATAGCAAGTG
AATACAGAAAACAGTTAGTGTTATGGCCAAAGCTAAAGGCTAATGACACA
CAAGCATTCGACAGATTCGAAAACTATTTGATCAAGTATCAAGCTTCGAT
GCGAGCAATTGGCAAGAACAGTCAGTGCAACTTAGAACTGATTCAACTAC
TTCAAAGCAAGATGCCACCATTCCTACAAGAGAGATGGAACAGAAAAGTC
TATCAGTCCAGAAGGCAAGATAAAGAGGCAGAGCTGGAAGATTTTATCAG
CTTTGTATCAGAAGAAACGGTAGTCATGAGTGATCCTTTCTTCTCGAGAG
GAGCAATCAATGAGATGTTGAACAGAGCACCGTCAGATTCGAACAAACCG
agacctccaaagtcatttcgAACCGGTGTTGACGAGAAATTGTGCTTATG
CTGCAAGAAGTCATCACACGATCTTGAGAAGTGTCAACAGTACCTTGCAC
TAGACCTGCCGTCTAGAAGAAAGTTCATCTACAAGTGGAGATTGTGCTTC
TGCTGTCTTAATCGAACATCAGATTCTCATCGAGCCAAGACCTGCNTGTA
CCTTGCACTAGACATGCCGTCTAGAAGAAAGTTCATCTACAAGTGGAGAT
TGTGCTTCTGCTGTCTTAATCGAACATCAGATTCTCATCGAGCCAAGACC
TGCCCAAAGAAACGCAAATGTCAGGTCTGCAAACGAAATCATCCAACCAC
TCTTCATGATCCAAGCTACCAACCAAGGACAACAACTCATCCACCAGCAA
CTACCCCACCAGCAACTACCCCACCAGCAACTACGAATCCATCACCAACT
TCAGAAACTACGACCACGACACtgaccacttgttcgacaggTGTCAACGA
ATTAGCTACCCTTTGCATCGTTGCAGTGAAGGTCCATCATACCAGCAATC
CAAACATCTACGTCGAAACACTTGCTTTACTTGACAACGGCTCACAAGCT
ACCTTCGTAACCGACGACGTCCTTTCCAACCTAGATGCGCCATCCACCGA
TACTAACCTNTAACGGCTCACAACCTACCTTCGTAACCGACGACGTCCTT
TCCAACCTAGATGCGCCATCCACCGATACTAACCTTGAAATCAACACTGT
ATCTGGAACCACAACCGAGAGAAGCTCTATAATCAATGGTCTCTGCGTTT
GTGCCACTGATCAACCTATACCCTTGTCAATCAAGCTTCCGAAAGTGTAC
AGCC Coding sequence (CDS) from alignment at scaffold_139:14925..16228 >TCONS_00047937 ID=TCONS_00047937|Name=TCONS_00047937|organism=Clytia hemisphaerica|type=CDS|length=1113bp|location=Sequence derived from alignment at scaffold_139:14925..16228 (Clytia hemisphaerica)
TTGGTCAAGTCGTGTGTTTACCTAGACGACAAAGATTGTTATCAACAAGC
AAAGGAGTTATTGAAGAAGAAGTATGGCAGTCCACATACGATAGCAAGTG
AATACAGAAAACAGTTAGTGTTATGGCCAAAGCTAAAGGCTAATGACACA
CAAGCATTCGACAGATTCGAAAACTATTTGATCAAGTATCAAGCTTCGAT
GCGAGCAATTGGCAAGAACAGTCAGTGCAACTTAGAACTGATTCAACTAC
TTCAAAGCAAGATGCCACCATTCCTACAAGAGAGATGGAACAGAAAAGTC
TATCAGTCCAGAAGGCAAGATAAAGAGGCAGAGCTGGAAGATTTTATCAG
CTTTGTATCAGAAGAAACGGTAGTCATGAGTGATCCTTTCTTCTCGAGAG
GAGCAATCAATGAGATGTTGAACAGAGCACCGTCAGATTCGAACAAACCG
agacctccaaagtcatttcgAACCGGTGTTGACGAGAAATTGTGCTTATG
CTGCAAGAAGTCATCACACGATCTTGAGAAGTGTCAACAGTACCTTGCAC
TAGACCTGCCGTCTAGAAGAAAGTTCATCTACAAGTGGAGATTGTGCTTC
TGCTGTCTTAATCGAACATCAGATTCTCATCGAGCCAAGACCTGCNTGTA
CCTTGCACTAGACATGCCGTCTAGAAGAAAGTTCATCTACAAGTGGAGAT
TGTGCTTCTGCTGTCTTAATCGAACATCAGATTCTCATCGAGCCAAGACC
TGCCCAAAGAAACGCAAATGTCAGGTCTGCAAACGAAATCATCCAACCAC
TCTTCATGATCCAAGCTACCAACCAAGGACAACAACTCATCCACCAGCAA
CTACCCCACCAGCAACTACCCCACCAGCAACTACGAATCCATCACCAACT
TCAGAAACTACGACCACGACACtgaccacttgttcgacaggTGTCAACGA
ATTAGCTACCCTTTGCATCGTTGCAGTGAAGGTCCATCATACCAGCAATC
CAAACATCTACGTCGAAACACTTGCTTTACTTGACAACGGCTCACAAGCT
ACCTTCGTAACCGACGACGTCCTTTCCAACCTAGATGCGCCATCCACCGA
TACTAACCTNTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047937-exon-scaffold_139-1491911889:14925..16228 | TCONS_00047937-exon-scaffold_139-1491911889:14925..16228 | Clytia hemisphaerica | exon |
| TCONS_00047937-exon-scaffold_139-1510915933:14925..16228 | TCONS_00047937-exon-scaffold_139-1510915933:14925..16228 | Clytia hemisphaerica | exon |
| TCONS_00047937-exon-scaffold_139-1575043694:14925..16228 | TCONS_00047937-exon-scaffold_139-1575043694:14925..16228 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:14925..16228 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005312 | DUF1759 |
Blast
The following BLAST results are available for this feature:
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