TCONS_00047933 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047933
Unique NameTCONS_00047933
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047933 ID=TCONS_00047933|Name=TCONS_00047933|organism=Clytia hemisphaerica|type=transcript|length=1245bp
AACGATGCCTTGTTTCAATGGAACATCGTGCTGGAAAACAGTGATCAAGA
CGTTGGTTTAAAGCTTTTGAATGGAACAACTGAATTATGGACCCAACAGT
GGGGTAAAGTTAGTGATGAAGGAAAAGCACTCTTCAAAGACAGATTGACC
GTCGAGAAAAGTGTCACCTATCTAAAAGCTACAATCAAAAATGTGGATTT
CAATGATTCTACAATAGAATTGAGAATTACAGGGGCTATTTTGGACAGCG
GCTTTACTAAATTATCTGATATTGATTCTACAATAAGCTTGATAGTTCAA
gGTGGGCCATTTTATTGTGGAGATAAACTCGAATCAAAATATATCGTTGG
ACCGAATGCTAGACCAAGATTTAAACTGTGTATTCAAAGCAATCCAGCAC
CAGAGATATCGTACAAATTTCCAAGCTCAAGTAGAGCAAGTGTAAAAGGG
ATGGTTACAGGACCAAGTTGGGATAAACAATATACCATAGAGTTTGAGCT
TCCCCCAATAGCTGCTGTGAATTGTGGTCGTGAGTTATTATATACAATAA
CTTCACCAAATTTACAAGGAAGCATACCTTTGACTGGAAAAAGCACAATA
ATTTTGACTGAAGATGAAAAAGGGTTATGGCTTGGAATAGGCATTGTCAT
CGGGTTGGTTATTGGGCTATTACTAGCTCTGGTAATCTTTCATATTTTGC
GTTTTTACCAGAGACAAAACAATACCAAAGGAAATCAACCCAATGAACTG
ACGGAGAAAGGACCAACTTATGAAGGTGTCAACGACAATGTTTTTGTGAA
TACAGAGTCGCCTAATGAACAGgATTATGAGTTTGTTGCAGATCATGGGA
ATTCAAAGACAGCGAACGCTGCAACCTATCAAGAACTCAATGCTATATCA
CCGCCAGATTTGACTTACACCAAACTTCAAGGAAAATCACATTACGAAAT
ATAATATGAATAGCAAAAGGAAATCCCATGCTTTTTAGGCTTATTTACAT
AGCTTTACGGTCGAAACGAAGGAAAGAAATGAACGTAGCCTAGAAATATT
ATTAGGACATAACGAATGTGAATGCAGCCTGAAAAAACAATGAATTGATA
ATACTTATTTAAAATAGACTaagttaacaatattttaaCGAAATTTTTTC
ATGCACCTATCCAACAGTAGCGGTGGTCAGCTTTTAAAGAGACTAGAAAA
TGATTTAAGTAAATTCCAACCAAAATTGTTGAGACATTATATCCC
Run BLAST on NCBI

transcript from alignment at scaffold_139:732544..736685-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047933 ID=TCONS_00047933|Name=TCONS_00047933|organism=Clytia hemisphaerica|type=transcript|length=4142bp|location=Sequence derived from alignment at scaffold_139:732544..736685- (Clytia hemisphaerica)
AACGATGCCTTGTTTCAATGGAACATCGTGCTGGAAAACAGTGATCAAGA
CGTTGGTTTAAAGCTTTTGAATGGAACAACTGAATTATGGACCCAACAGT
GGGGTAAAGTTAGTGATGAAGGAAAAGCACTCTTCAAAGACAGATTGACC
GTCGAGAAAAGTGTCACCTATCTAAAAGCTACAATCAAAAATGTGGATTT
CAATGATTCTACAATAGAATTGAGAATTACAGGGGCTATTTTGGACAGCG
GCTTTACTAAATTATCTGATATTGATTCTACAATAAGCTTGATAGTTCAA
GGTAAGAAAATGATCTATGTTCAGAGGATTATATTTCATATATATGCCCT
TGTCTCGATGACCCAGTGATGACTTTTTTTGTGTTTTTCAAAATCTTCGC
AAACCTAGTCACCAGCCTCCTTTTTATTCAGTTCTGGCATCGACTGGACA
AAAATCCTCTCTAAAGGGACTCGGTTAAGTTATGGGTATGGCTGGTATTT
TTTGCTGACGTAATCAGAATTTCAATTTTTTTTTTCAAATGATCGACTTA
AGTGAGATATATATTAAGTGAAAGTTTGAAGACAATTGGATAAACAATCC
TTGAGAAATTCAATTTTTAGTTTCTATGACGTCATCGATTATGACATCAT
AATCAATTTTTGTATTTTCTTGCGAAAATCAGTGAAAAACAATTAGGTAA
CACATCAGGCTAGAAACTACATTATAGTACCCTTCATATTCAGTCATTTT
TTGGTCGTTTTGTGTCGGCTAATGCGATCTAAAAATTATAGTAATTTTAA
GACATGCCATAACTTACCCGAGGAGTTTTTCTTAAGTACTGCTTGAAAAT
TATATCATTACACCAAACACTATTATCTTTAAATTGATACTGTATCGTAT
ATTGGCTTAACTTTCCTTCTGGCGTATGTTTACGGGATATTTCCGCTGTT
CTTTTTTCCTGCCATACTGAAAAGTATCAAGTCAAAAATCCAGCGAGATC
CTAAGATTTACAGCGATTTTCCAAGTGAAAAAGAGAGTCTACAGATACTT
GCAATAGGATGAGATGTATTTTTCTCCAACCAGCAAAACGAGAATTGTAC
TCTATGTGGTTGACGGCTACACTTAGGTATATAAAAAATGTTAGCAAAAG
CCTCTTACCACATCAAACACATTAAGCGGAATTGAAGCCTCTTAGTAAAG
AAAGGTGCAAAATTATATTTTGAATTATCAAAACTATCAAAGTAATTTCC
ATGTCGGTCGACCGTATTTTCTAGGTGGGCCATTTTATTGTGGAGATAAA
CTCGAATCAAAATATATCGTTGGACCGAATGCTAGACCAAGATTTAAACT
GTGTATTCAAAGCAATCCAGCACCAGAGATATCGTACAAATTTCCAAGCT
CAAGTAGAGCAAGTGTAAAAGGGATGGTTACAGGACCAAGTTGGGATAAA
CAATATACCATAGAGTTTGAGCTTCCCCCAATAGCTGCTGTGAATTGTGG
TCGTGAGTTATTATATACAATAACTTCACCAAATTTACAAGGAAGCATAC
CTTTGACTGGAAAAAGCACAATAATTTTGACTGGTGAGTTAGTTAATCTA
GCAATTTTGGGCACTTTCCTTGACAGCCGACCCCGACCTCCGTCCCCGTG
CCCCATTTTGTTTGATTTACCTAGAAAATATTTTTGGAAACATCAATTTA
TATAACTTTCTAACACATTCAATTTCTGAAGGGCTGTGAAGGTGAATGAA
TTTTCATTCTTCAGAAATCTTACTTCGTTTTTCTTGAATAGATATGCCTT
TGAATGTCACAATTTCATCATTTTCATACGAAAACAAAGTACCTAAAGTC
ACTTGGAGGGAGATCAACGCTGGGTTGTGTAGCAACGAGATTGCTTACTA
CATTGAAGTTTCCAACCAGACAGCGACAATAACAAAAGGACCAGTGACCG
GGACATCTTTATTCATTGATGAAATAGGCCAAGAACCAAAACTTATTAAG
ATGTGGGCTGAATATGACTCTCCAACGGGGAAGAAAACTGGAGCGAAAAG
TGTAGTTTGGTTTACTAAAACCACTACAACGACCACGACAACAACGACGA
CAATAAAACCGGAGATCCTAACAAGTTCAGTACCAAGTGCAACTAGTATG
TATACTGTGTGTCCTTGAGATAAACATCGAAAAGAGAAAAATAATTAAAG
ACAAAGAAATCGAAAACTGGGTAAATGGAAAATTTGCAAATTATTATGAA
GAGTTTTATAGTCGGGGAGAGGCTAAAACTGCAATGTTTTTTCTTTGCAC
CCATTTTTTTTAATGATGATACAGCAAAATTAAAACCATTTTCAAAATCT
TCTGTTTTTCTAGAAGATGAAAAAGGGTTATGGCTTGGAATAGGCATTGT
CATCGGGTTGGTTATTGGGCTATTACTAGCTCTGGTAATCTTTCATATTT
TGCGTTTTTACCAGAGACAAAACAATACCAAAGGTAAGCAAGAATTTATG
ACAAATTTGTAGTTTCAAGCATAATATACTTATTTTCAATGAACACGAGC
CCAAACTCCAACCTTACTACACATCGGTATTATATCTGTCAATATTTTTA
ACTTTGACGTTTGCTGTTCATCTAGGAAATCAACCCAATGAACTGACGGA
GAAAGGACCAACTTATGAAGGTGTCAACGACAATGTTTTTGTGAATACAG
AGTCGCCTAATGAACAGGTACACATTGATTGTATATCTCAATAGTAGTAT
AAAGGATTCCAATGGGAGCTATTTTATCTAAAATGAAAATGTTGATATTC
GTTTATCATGAGCTGCAACATTTGCTCGTCTATCAGCTTTTTGCTCTGTA
AAGATTTGCAAGACAAAGACAGTTTAAGTATTAGTGAGGGATGTTGCTTG
TAGAACCATGAGCTCCATTTTTACCAAAGATATCCAGTAAAGAATCTATT
ATTCAGAACCGCTAGGCTTTAACTCCTATCACTTCTTTTCCTGGATTGCC
ACACTTAAAGCTTGGGGACATGAGAAGATTTTTTTGCGTTGGTGTAGTGC
AACATGCTCCATCGCACAAACCTGAAACGCTTTTTAATGTTGCTACATAG
TACCGTGAAAATCAGAGGTCAAAATCATGTATTGACACTGTGTCGACGAA
TCGATTTTCTATTCATCGCGCAATCAACGAAGTCAAAAGTAACCGTGACG
ACCATCTGAGATCTTGGATGAAGTTCAAAGTTGATATTTTTATTCCCGTC
GTTGAAAACACAACTAAAAAATATCATCAATGCTTTTTAAAGTCAGTGAT
AGAGAATCATAACATAAAGTCTGTCTATTATTTCGATTCAATTAAAAGTA
ACATTTCCATAATTAATACACCCCTGTCGGTAGAACTTTTTCCCTCACCC
TATTGTTATTATGCTGATATAAGCAAAATTATTTTTCTTTTCCTCTTTCT
AAACAATTTTGCTCCCCATTTATGTCAATCCAATGTGAAAAACCTTGTGA
ATTAAAATTGATGAGTAAGCAAATGATATCACTCTTATTTAAAAACGAAA
CCTTTAAGTATTGGTTCAGTATGAATCCTCTCCATCTATTGTCCTGCCCA
GGCTATGAACCTTCTGAAATAACTTTTTGACATCGGTTGATATTCAACGG
TATTCTAAAGTTTGGTCACTAAAACTTGGAAAAATTTTCTAAATAACCCT
TTAATTTATCATTTTTCAGGATTATGAGTTTGTTGCAGATCATGGGAATT
CAAAGACAGCGAACGCTGCAACCTATCAAGAACTCAATGCTATATCACCG
CCAGATTTGACTTACACCAAACTTCAAGGAAAATCACATTACGAAATATA
ATATGAATAGCAAAAGGAAATCCCATGCTTTTTAGGCTTATTTACATAGC
TTTACGGTCGAAACGAAGGAAAGAAATGAACGTAGCCTAGAAATATTATT
AGGACATAACGAATGTGAATGCAGCCTGAAAAAACAATGAATTGATAATA
CTTATTTAAAATAGACTAAGTTAACAATATTTTAACGAAATTTTTTCATG
CACCTATCCAACAGTAGCGGTGGTCAGCTTTTAAAGAGACTAGAAAATGA
TTTAAGTAAATTCCAACCAAAATTGTTGAGACATTATATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030496XLOC_030496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047933-exon-scaffold_139-1575043694:736385..736685TCONS_00047933-exon-scaffold_139-1575043694:736385..736685Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1575043694:735103..735411TCONS_00047933-exon-scaffold_139-1575043694:735103..735411Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1575043694:734203..734322TCONS_00047933-exon-scaffold_139-1575043694:734203..734322Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1575043694:733969..734060TCONS_00047933-exon-scaffold_139-1575043694:733969..734060Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1575043694:732544..732966TCONS_00047933-exon-scaffold_139-1575043694:732544..732966Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1510915933:736385..736685TCONS_00047933-exon-scaffold_139-1510915933:736385..736685Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1510915933:735103..735411TCONS_00047933-exon-scaffold_139-1510915933:735103..735411Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1510915933:734203..734322TCONS_00047933-exon-scaffold_139-1510915933:734203..734322Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1510915933:733969..734060TCONS_00047933-exon-scaffold_139-1510915933:733969..734060Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1510915933:732544..732966TCONS_00047933-exon-scaffold_139-1510915933:732544..732966Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1491911889:736385..736685TCONS_00047933-exon-scaffold_139-1491911889:736385..736685Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1491911889:735103..735411TCONS_00047933-exon-scaffold_139-1491911889:735103..735411Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1491911889:734203..734322TCONS_00047933-exon-scaffold_139-1491911889:734203..734322Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1491911889:733969..734060TCONS_00047933-exon-scaffold_139-1491911889:733969..734060Clytia hemisphaericaexon
TCONS_00047933-exon-scaffold_139-1491911889:732544..732966TCONS_00047933-exon-scaffold_139-1491911889:732544..732966Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:732544..736685 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.211965	0	0	0	0	1.36173	2.38529	3.31378e-08	0	0.405077	0.458372	2.60691e-09	0.68906	0	0	0.335001	0.383006	0	1.67837	0	0.82983	0	0	0	0.764169	1.06084	0.675868	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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