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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047850 ID=TCONS_00047850|Name=TCONS_00047850|organism=Clytia hemisphaerica|type=transcript|length=1197bp
CATTGATTTGATCCTTACAAATCGGGCACCTTGCTTTAAAAACAGTGGGT
CATTTGAAACTGGAATCAGTGACTACCATCATCTGATTTATAGCATGTTC
AAAGCTAGCTTTAAAAAATCTCCTCCAAAGATAATTGAATATAGatcctt
taaaaattttgatgaaaagggTTTCCGGTCCAACCTCTGTCGTAATCTTG
ATTGTGACTTCTCAGACTTTGAAGCTTTTAGcacaacttttgaaaatatt
cttgatgcTCATGCACCAATGAAAAAGCGAACCGTCCGGGGAAATCAAAA
ACCTCATATGTCTAAAACCCTACGTAAAGCAATCATGGTTCGCTCATGCT
AGAAAAACAAAGCAAATAAGACCGGAAACCCCCTCTATAAAACCTTGTAT
CGCAAACAAAAAAACTATATTGTAAATTTGAATGGGAAAGCAAAGAGAAA
ATACTTTCGTGATTTAGGAACAtcagaaaatttctggaaatctGCAAAAC
CATATTTCTCAAAGAAAGTCCAACATCACGAGAAAATCTTCTTGCTTGAC
GattcaaataaatcaaaacttgttGATGATGAAGCCTCCATAGCAAAAAT
TTTTAACGactattttgtaaatattgctTCCCATCTCGGcctaaaaactt
caaaatgcagTCTTCCAGAAGATTCTGAAACCGATCCGCTTGAAAACCAT
CCTAGTATACTTCACATCATCGAATCTCTATCTGAAAGCAAGTCTTTCTC
TTTTAGCGAAGTAACTCCTGAAGATATCCATTGTATTATGCTCAAACTTA
ATCAAGATAAATCTGTCAGCGGTCCTTTTTCAATTAGAATAATCAAAGTG
GTCTCTGATATACTGTCAGGGCCATTATCAAGACTCGTAAACCTTGCCTT
CAGTACTTCTAAATTTCCCCAAAGTCTAAAAAGGGCAAGGGTTACGCCTG
TTTTTAAGAAGGAAGAtaaatttctgaagaaaaacTATCGGCCAATTAGT
ATATTACcagctttttcaaaaatatttgaaagaattatGCACGACCAACT
TTCATCCTACTTTGATGGCATTTTTGATTCGAAACTCTGTGGGTTTAGAG
CTAAGCACAGCACTCAACATGCTCTAATTCAAATGATTGGTCAATGGCAT
CAAAGTCTTGATGAGTCCGGGAAGGTGGGAGCAGTACTGATGGACTT Run BLAST on NCBI protein sequence of TCONS_00047850-protein >TCONS_00047850-protein ID=TCONS_00047850-protein|Name=TCONS_00047850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MLKLNQDKSVSGPFSIRIIKVVSDILSGPLSRLVNLAFSTSKFPQSLKRA
RVTPVFKKEDKFLKKNYRPISILPAFSKIFERIMHDQLSSYFDGIFDSKL
CGFRAKHSTQHALIQMIGQWHQSLDESGKVGAVLMD Run BLAST on NCBI transcript from alignment at scaffold_138:38363..39559 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047850 ID=TCONS_00047850|Name=TCONS_00047850|organism=Clytia hemisphaerica|type=transcript|length=1197bp|location=Sequence derived from alignment at scaffold_138:38363..39559 (Clytia hemisphaerica)
AAGTCCATCAGTACTGCTCCCACCTTCCCGGACTCATCAAGACTTTGATG
CCATTGACCAATCATTTGAATTAGAGCATGTTGAGTGCTGTGCTTAGCTC
TAAACCCACAGAGTTTCGAATCAAAAATGCCATCAAAGTAGGATGAAAGT
TGGTCGTGCataattctttcaaatatttttgaaaaagctgGTAATATACT
AATTGGCCGATAgtttttcttcagaaatttaTCTTCCTTCTTAAAAACAG
GCGTAACCCTTGCCCTTTTTAGACTTTGGGGAAATTTAGAAGTACTGAAG
GCAAGGTTTACGAGTCTTGATAATGGCCCTGACAGTATATCAGAGACCAC
TTTGATTATTCTAATTGAAAAAGGACCGCTGACAGATTTATCTTGATTAA
GTTTGAGCATAATACAATGGATATCTTCAGGAGTTACTTCGCTAAAAGAG
AAAGACTTGCTTTCAGATAGAGATTCGATGATGTGAAGTATACTAGGATG
GTTTTCAAGCGGATCGGTTTCAGAATCTTCTGGAAGActgcattttgaag
tttttaggCCGAGATGGGAagcaatatttacaaaatagtCGTTAAAAATT
TTTGCTATGGAGGCTTCATCATCaacaagttttgatttatttgaatCGTC
AAGCAAGAAGATTTTCTCGTGATGTTGGACTTTCTTTGAGAAATATGGTT
TTGCagatttccagaaattttctgaTGTTCCTAAATCACGAAAGTATTTT
CTCTTTGCTTTCCCATTCAAATTTACAATATAGTTTTTTTGTTTGCGATA
CAAGGTTTTATAGAGGGGGTTTCCGGTCTTATTTGCTTTGTTTTTCTAGC
ATGAGCGAACCATGATTGCTTTACGTAGGGTTTTAGACATATGAGGTTTT
TGATTTCCCCGGACGGTTCGCTTTTTCATTGGTGCATGAgcatcaagaat
attttcaaaagttgtgCTAAAAGCTTCAAAGTCTGAGAAGTCACAATCAA
GATTACGACAGAGGTTGGACCGGAAAcccttttcatcaaaatttttaaag
gatCTATATTCAATTATCTTTGGAGGAGATTTTTTAAAGCTAGCTTTGAA
CATGCTATAAATCAGATGATGGTAGTCACTGATTCCAGTTTCAAATGACC
CACTGTTTTTAAAGCAAGGTGCCCGATTTGTAAGGATCAAATCAATG Coding sequence (CDS) from alignment at scaffold_138:38363..39559 >TCONS_00047850 ID=TCONS_00047850|Name=TCONS_00047850|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_138:38363..39559 (Clytia hemisphaerica)
GTCCATCAGTACTGCTCCCACCTTCCCGGACTCATCAAGACTTTGATGCC
ATTGACCAATCATTTGAATTAGAGCATGTTGAGTGCTGTGCTTAGCTCTA
AACCCACAGAGTTTCGAATCAAAAATGCCATCAAAGTAGGATGAAAGTTG
GTCGTGCataattctttcaaatatttttgaaaaagctgGTAATATACTAA
TTGGCCGATAgtttttcttcagaaatttaTCTTCCTTCTTAAAAACAGGC
GTAACCCTTGCCCTTTTTAGACTTTGGGGAAATTTAGAAGTACTGAAGGC
AAGGTTTACGAGTCTTGATAATGGCCCTGACAGTATATCAGAGACCACTT
TGATTATTCTAATTGAAAAAGGACCGCTGACAGATTTATCTTGATTAAGT
TTGAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047850-exon-scaffold_138-1491911889:38363..39559 | TCONS_00047850-exon-scaffold_138-1491911889:38363..39559 | Clytia hemisphaerica | exon |
| TCONS_00047850-exon-scaffold_138-1510915933:38363..39559 | TCONS_00047850-exon-scaffold_138-1510915933:38363..39559 | Clytia hemisphaerica | exon |
| TCONS_00047850-exon-scaffold_138-1575043694:38363..39559 | TCONS_00047850-exon-scaffold_138-1575043694:38363..39559 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_138 | supercontig | scaffold_138:38363..39559 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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