TCONS_00047845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047845
Unique NameTCONS_00047845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047845 ID=TCONS_00047845|Name=TCONS_00047845|organism=Clytia hemisphaerica|type=transcript|length=317bp
NGCTTGTTCTCGTTAACAACTGCATTGACTTCATCTAAATTGAGCTTCAA
CACATATGAACCATCAAGTTTCAAATCATTCTCTTCTGATCTAAATGGGT
AAAACAATATTAGAATATGGTGGGAAAATCTTTCTGggtgtttgtttttg
ttagtAGTGTAGTACCTCAAAACTTTTGGAACCTTACGAAGCTTAAGTTT
CTCCTTACTGTTGATTAATTTGGCTGATTTTGGAAGTGTTTGGGGTTCTT
GATGATTCACTGCACTTGTTGCATCATCTAGTACAGTAGGCTgccaatca
ttttcatcatctgtATT
Run BLAST on NCBI

protein sequence of TCONS_00047845-protein

>TCONS_00047845-protein ID=TCONS_00047845-protein|Name=TCONS_00047845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
NTDDENDWQPTVLDDATSAVNHQEPQTLPKSAKLINSKEKLKLRKVPKVL
RYYTTNKNKHPERFSHHILILFYPFRSEENDLKLDGSYVLKLNLDEVNAV
VNENK
Run BLAST on NCBI

transcript from alignment at scaffold_138:6512..6828

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047845 ID=TCONS_00047845|Name=TCONS_00047845|organism=Clytia hemisphaerica|type=transcript|length=317bp|location=Sequence derived from alignment at scaffold_138:6512..6828 (Clytia hemisphaerica)
AATacagatgatgaaaatgattggcAGCCTACTGTACTAGATGATGCAAC
AAGTGCAGTGAATCATCAAGAACCCCAAACACTTCCAAAATCAGCCAAAT
TAATCAACAGTAAGGAGAAACTTAAGCTTCGTAAGGTTCCAAAAGTTTTG
AGGTACTACACTactaacaaaaacaaacaccCAGAAAGATTTTCCCACCA
TATTCTAATATTGTTTTACCCATTTAGATCAGAAGAGAATGATTTGAAAC
TTGATGGTTCATATGTGTTGAAGCTCAATTTAGATGAAGTCAATGCAGTT
GTTAACGAGAACAAGCN

Coding sequence (CDS) from alignment at scaffold_138:6512..6828

>TCONS_00047845 ID=TCONS_00047845|Name=TCONS_00047845|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_138:6512..6828 (Clytia hemisphaerica)
AATacagatgatgaaaatgattggcAGCCTACTGTACTAGATGATGCAAC
AAGTGCAGTGAATCATCAAGAACCCCAAACACTTCCAAAATCAGCCAAAT
TAATCAACAGTAAGGAGAAACTTAAGCTTCGTAAGGTTCCAAAAGTTTTG
AGGTACTACACTactaacaaaaacaaacaccCAGAAAGATTTTCCCACCA
TATTCTAATATTGTTTTACCCATTTAGATCAGAAGAGAATGATTTGAAAC
TTGATGGTTCATATGTGTTGAAGCTCAATTTAGATGAAGTCAATGCAGTT
GTTAACGAGAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030453XLOC_030453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047845-exon-scaffold_138-1491911889:6512..6828TCONS_00047845-exon-scaffold_138-1491911889:6512..6828Clytia hemisphaericaexon
TCONS_00047845-exon-scaffold_138-1510915933:6512..6828TCONS_00047845-exon-scaffold_138-1510915933:6512..6828Clytia hemisphaericaexon
TCONS_00047845-exon-scaffold_138-1575043694:6512..6828TCONS_00047845-exon-scaffold_138-1575043694:6512..6828Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047845-proteinTCONS_00047845-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_138supercontigscaffold_138:6512..6828 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.35575	8.56048	2.975	2.54675	5.75793	2.45	3.99074	5.5344	0.830306	1.48179	0	1.96864	1.20035	0.453692	1.40096	2.80198	0.29999	0.505427	0.698275	1.82673	4.12819	6.50543	2.25949	3.0813	1.05789	3.22924	4.9539	2.88378	4.6987	2.59987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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