TCONS_00047843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047843
Unique NameTCONS_00047843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047843 ID=TCONS_00047843|Name=TCONS_00047843|organism=Clytia hemisphaerica|type=transcript|length=629bp
ttgcattttcatcatctAAAATAATGTTTGGCACTTCTGATACAATGACT
GTTTCACATGTTGGTGTCCGATACGCACTGAGTGGATCATCAGAATCAAA
TTCATTTTCTAATTGCTCTCAAAAGGCTTGATTAAAGTCACTGTTGTATC
GTCAACAAATCTGGAAGAAGCGTTTGATATGGAATCATTATTTGATAAAA
CCCTTTCAACatattcatcattattcatttgGTCAATTATTGACATATCA
ATATCTATATCATGATACAAAgaattattattcactaaaaagtccaaagt
ttcaaaaactttttgtcgtCTTACTTGTTGCGAAATAACAGGGtttttgt
aggatatttttctttttaattcaacATTTATTACACCACTACTATCACTT
CCTCTAGGAAGTACTTTACATACATCTGGTGTTTCAATGGGAACATTGCA
TATTGCACCTTGTAATTTAGGGAATTCTCCTTTGCGCATTATCATGACTT
CAGAAAATGAAATTCTTTGAGCCTCTAAAATTCTTTCCAGTTTTCGTATA
TCATTTAGATCATCTGGGagatcaaaaatttgaagcttGTTAGTAACAGA
CTGGCATGGGATTTCTCCCTTCGTTAATT
Run BLAST on NCBI

protein sequence of TCONS_00047843-protein

>TCONS_00047843-protein ID=TCONS_00047843-protein|Name=TCONS_00047843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
LTKGEIPCQSVTNKLQIFDLPDDLNDIRKLERILEAQRISFSEVMIMRKG
EFPKLQGAICNVPIETPDVCKVLPRGSDSSGVINVELKRKISYKNPVISQ
QVRRQKVFETLDFLVNNNSLYHDIDIDMSIIDQMNNDEYVERVLSNNDSI
SNASSRFVDDTTVTLIKPFESN
Run BLAST on NCBI

transcript from alignment at scaffold_138:3200..3828

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047843 ID=TCONS_00047843|Name=TCONS_00047843|organism=Clytia hemisphaerica|type=transcript|length=629bp|location=Sequence derived from alignment at scaffold_138:3200..3828 (Clytia hemisphaerica)
AATTAACGAAGGGAGAAATCCCATGCCAGTCTGTTACTAACaagcttcaa
atttttgatctCCCAGATGATCTAAATGATATACGAAAACTGGAAAGAAT
TTTAGAGGCTCAAAGAATTTCATTTTCTGAAGTCATGATAATGCGCAAAG
GAGAATTCCCTAAATTACAAGGTGCAATATGCAATGTTCCCATTGAAACA
CCAGATGTATGTAAAGTACTTCCTAGAGGAAGTGATAGTAGTGGTGTAAT
AAATgttgaattaaaaagaaaaatatcctacaaaaaCCCTGTTATTTCGC
AACAAGTAAGacgacaaaaagtttttgaaactttggactttttagtgaat
aataattcTTTGTATCATGATATAGATATTGATATGTCAATAATTGACca
aatgaataatgatgaatatGTTGAAAGGGTTTTATCAAATAATGATTCCA
TATCAAACGCTTCTTCCAGATTTGTTGACGATACAACAGTGACTTTAATC
AAGCCTTTTGAGAGCAATTAGAAAATGAATTTGATTCTGATGATCCACTC
AGTGCGTATCGGACACCAACATGTGAAACAGTCATTGTATCAGAAGTGCC
AAACATTATTTTagatgatgaaaatgcaa

Coding sequence (CDS) from alignment at scaffold_138:3200..3828

>TCONS_00047843 ID=TCONS_00047843|Name=TCONS_00047843|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_138:3200..3828 (Clytia hemisphaerica)
TTAACGAAGGGAGAAATCCCATGCCAGTCTGTTACTAACaagcttcaaat
ttttgatctCCCAGATGATCTAAATGATATACGAAAACTGGAAAGAATTT
TAGAGGCTCAAAGAATTTCATTTTCTGAAGTCATGATAATGCGCAAAGGA
GAATTCCCTAAATTACAAGGTGCAATATGCAATGTTCCCATTGAAACACC
AGATGTATGTAAAGTACTTCCTAGAGGAAGTGATAGTAGTGGTGTAATAA
ATgttgaattaaaaagaaaaatatcctacaaaaaCCCTGTTATTTCGCAA
CAAGTAAGacgacaaaaagtttttgaaactttggactttttagtgaataa
taattcTTTGTATCATGATATAGATATTGATATGTCAATAATTGACcaaa
tgaataatgatgaatatGTTGAAAGGGTTTTATCAAATAATGATTCCATA
TCAAACGCTTCTTCCAGATTTGTTGACGATACAACAGTGACTTTAATCAA
GCCTTTTGAGAGCAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030451XLOC_030451Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047843-proteinTCONS_00047843-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047843-exon-scaffold_138-1491911889:3200..3828TCONS_00047843-exon-scaffold_138-1491911889:3200..3828Clytia hemisphaericaexon
TCONS_00047843-exon-scaffold_138-1510915933:3200..3828TCONS_00047843-exon-scaffold_138-1510915933:3200..3828Clytia hemisphaericaexon
TCONS_00047843-exon-scaffold_138-1575043694:3200..3828TCONS_00047843-exon-scaffold_138-1575043694:3200..3828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_138supercontigscaffold_138:3200..3828 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58195	1.14848	1.08631	1.17781	0.174038	0.492316	0.139712	0.483384	0.401139	0.31538	0	0.264636	0.198993	0	0.123439	0.119266	0.213788	0.12999	0.214081	0.325595	0.769659	1.17649	0.470585	0.436173	0.207424	0.566587	1.34812	0.649349	0.40128	0.810586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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