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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047839 ID=TCONS_00047839|Name=TCONS_00047839|organism=Clytia hemisphaerica|type=transcript|length=924bp
CTCTCATATGATGCGTTGCAAATGCAGGTTTCATCATTTGTGCATCGAGG
AATAGACCAAGAACAGCAAAAACTGCCCAACGTGTGGTACCGTTTCGATA
TCGGCCACTGTCAAGCGTGAATCCTATGATGATCTTTTACACATCTGGTA
CCACAAATTTTCAGATGTAGTTAACATTGACACTGAAGACAAATCTGACA
TTTCTGTGAGAAGATGTAAACTGTACACAgacactttgaaaaaaatacca
agaatttttaaaaaagggTTAGTGCCCCTGAATGTAATGTTTACAGACGA
GTTCTCTACTGATTATGGTGGTCCGACCAGAGagtttttcactgaaatat
ttggTTTGGTAGTTGGCAAGCTAGTCCATGGAGATAGTAGAAACTTTACA
TTTATTCACGACTTGGTGAGGTTGGGGAACAACGAATATTTGTATTTTGG
GTTTATTACTGCTCTTGCATTAGTTCATGGTTGCCCTGGCCCTCGTTACT
TTTGTAAATCTGTTGTTGATTTTATCTTCCGTGGAGACGCTGAGCCCACG
ATTGAGGAGGTAGCTGATTCAGAAATGAAAGAGAAATTGAAAGAACTAAG
AGAATGCAATGATCGCGAGTTGTTTGAAAATCAAATGAAGGTCTTCTTTG
AAAGATTTGACTCCGGGTTTGTCGCAGCCACTGTATCATACGAAGAGAAA
GATAACTTGTTAAAGACGATGGCGCGTCACCACGTAATTTCTTGTGCACA
TGAAGAAATAACCCAATACATCACAGGCATCAGAATTGGTCACGTTCTAT
CAGCTCTAAAATGTCATGAAAGCAAGTTTCTAAAAGAGTTTATCTACGAT
GAGAAACTAATCACAGCAGACTGCATCAAGAGAATTTTTAAGGTGAAGTA
TTCGTCGATTCTAGAAGAAAGTCG Run BLAST on NCBI protein sequence of TCONS_00047839-protein >TCONS_00047839-protein ID=TCONS_00047839-protein|Name=TCONS_00047839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MFTDEFSTDYGGPTREFFTEIFGLVVGKLVHGDSRNFTFIHDLVRLGNNE
YLYFGFITALALVHGCPGPRYFCKSVVDFIFRGDAEPTIEEVADSEMKEK
LKELRECNDRELFENQMKVFFERFDSGFVAATVSYEEKDNLLKTMARHHV
ISCAHEEITQYITGIRIGHVLSALKCHESKFLKEFIYDEKLITADCIKRI
FKVKYSSILEES Run BLAST on NCBI transcript from alignment at scaffold_138:57725..59724- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047839 ID=TCONS_00047839|Name=TCONS_00047839|organism=Clytia hemisphaerica|type=transcript|length=2000bp|location=Sequence derived from alignment at scaffold_138:57725..59724- (Clytia hemisphaerica)
CTCTCATATGATGCGTTGCAAATGCAGGTTTCATCATTTGTGCATCGAGG
AATAGACCAAGAACAGCAAAAACTGCCCAACGTGTGGTACCGTTTCGATA
TCGGCCACTGTCAAGCGTGAATCCTATGATGATCTTTTACACATCTGGTA
CCACAAATTTTCAGATGTAGTTAACATTGACACTGAAGACAAATCTGACA
TTTCTGTGAGAAGATGTAAACTGTACACAGACACTTTGAAAAAAATACCA
AGAATTTTTAAAAAAGGGTTAGTGCCCCTGAATGTAATGTTTACAGACGA
GTTCTCTACTGATTATGGTGGTCCGACCAGAGAGTTTTTCACTGAAATAT
TTGGTTTGGTAGTTGGCAAGCTAGTCCATGGAGATAGTAGAAACTTTACA
TTTATTCACGACTTGGTGAGGTTGGGGAACAACGAATATTTGTATTTTGG
GTTTATTACTGCTCTTGCATTAGTTCATGGTTGCCCTGGCCCTCGTTACT
TTTGTAAATCTGTTGTTGATTTTATCTTCCGTGGAGACGCTGAGCCCACG
ATTGAGGAGGTAGCTGATTCAGAAATGAAAGAGAAATTGAAAGAACTAAG
AGAATGCAATGATCGCGAGTTGTTTGAAAATCAAATGAAGGTCTTCTTTG
AAAGATTTGACTCCGGGTTTGTCGCAGCCACTGTATCATACGAAGAGAAA
GATAACTTGTTAAAGACGATGGCGCGTCACCACGTAATTTCTTGTGCACA
TGAAGAAATAACCCAATACATCACAGGCATCAGAATTGGTCACGTTCTAT
CAGCTCTAAAATGTCATGAAAGCAAGTTTCTAAAAGAGTTTATCTACGAT
GAGAAACTAATCACAGCAGACTGCATCAAGAGAATTTTTAAGGTACCTTT
TTTATTCCTCCACTTATTCGACACTTTTAAAGCTTGATTTCCGAATGTAA
AGACATGTTTAAGGTTGCAACATTTTTTCCAAAAAAATCCCTTTCTTGGT
TTTCGATAATTTTGATAAAAGTTTTCCAGTTGTAAATACCGGAAATGGAG
GTTTTACCTAAAGTTTTTTTTCAAGATTTTGCATTATCCTTTTGAAAGTC
CCTAAGCTTAAACCCATTTATTTGATTTATTTTCTCAGCACCTGACTTTT
TTAGCCTACATTTGTCTAAAAATTACGTTTTCAATTTAGACATTTTAATT
TATAAGCAAACGAGTTGCTAAGGGCGCAGCTCTCAAATTTCCTAAAAAAT
TAAGCAACTTGCTTAGCAACCCTTAGCCCTAAAATCTTCACAGAAACCTT
TTTTCTCAGCTCACACAGTCTAAAGCAGCTCAAATGTCCCATTTGATGTT
TAAAGTTTTAAGCAACATTACAAGAAACTTTAGCCCTGGGTTTCAAAAAA
TGCTTAGCAACTCCAGCCCTGAACCGAAAATTGGTTATAATAATTGCTTA
TAATAAAATTTGTAGTCAAATAATTTTTCAAAATACCATCTTGGAAATTG
ATTATCACCACTATCCATCAATTTGAAATACCTTAGAAATAATCCTTAGG
TCGAAGGGAGGTATAATATTTAAATTTCATTTATCATGGTATCATGGCAC
CAAACTCCCATAACACCAAAACCTTGCGTTTTGTCGAGAAATTCATTTAT
TTTCAAAGCCATAGCCTCNCTTAGAAATAATCCTTAGGTCGAAGGGAGGT
ATAATATTTAAATTTCATTTATCATGGTATCATGGCACCAAACTCCCATA
ACACCAAAACCTTGCGTTTTGTCGAGAAATTCATTTATTTTCAAAGAGAC
AGATATCTAGGGTATCAGCCATAGCCTTTTATCATTATATGTACATTAGA
TTTTTTTCTGATTTAGAAAGTACTATATCAAAATTACCCACACGATACTC
TATAGGCTATGGCTGAGACTCAATACCTTAAGGGAACTAATTTTTGCGAA
ACTAATTTTCTTTATTAGGTGAAGTATTCGTCGATTCTAGAAGAAAGTCG
Coding sequence (CDS) from alignment at scaffold_138:57725..59724- >TCONS_00047839 ID=TCONS_00047839|Name=TCONS_00047839|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_138:57725..59724- (Clytia hemisphaerica)
GTGAAGTATTCGTCGATTCTAGAAGAAAGTATGTTTACAGACGAGTTCTC
TACTGATTATGGTGGTCCGACCAGAGAGTTTTTCACTGAAATATTTGGTT
TGGTAGTTGGCAAGCTAGTCCATGGAGATAGTAGAAACTTTACATTTATT
CACGACTTGGTGAGGTTGGGGAACAACGAATATTTGTATTTTGGGTTTAT
TACTGCTCTTGCATTAGTTCATGGTTGCCCTGGCCCTCGTTACTTTTGTA
AATCTGTTGTTGATTTTATCTTCCGTGGAGACGCTGAGCCCACGATTGAG
GAGGTAGCTGATTCAGAAATGAAAGAGAAATTGAAAGAACTAAGAGAATG
CAATGATCGCGAGTTGTTTGAAAATCAAATGAAGGTCTTCTTTGAAAGAT
TTGACTCCGGGTTTGTCGCAGCCACTGTATCATACGAAGAGAAAGATAAC
TTGTTAAAGACGATGGCGCGTCACCACGTAATTTCTTGTGCACATGAAGA
AATAACCCAATACATCACAGGCATCAGAATTGGTCACGTTCTATCAGCTC
TAAAATGTCATGAAAGCAAGTTTCTAAAAGAGTTTATCTACGATGAGAAA
CTAATCACAGCAGACTGCATCAAGAGAATTTTTAAGGTGAAGTATTCGTC
GATTCTAGAAGAAAGTATGTTTACAGACGAGTTCTCTACTGATTATGGTG
GTCCGACCAGAGAGTTTTTCACTGAAATATTTGGTTTGGTAGTTGGCAAG
CTAGTCCATGGAGATAGTAGAAACTTTACATTTATTCACGACTTGGTGAG
GTTGGGGAACAACGAATATTTGTATTTTGGGTTTATTACTGCTCTTGCAT
TAGTTCATGGTTGCCCTGGCCCTCGTTACTTTTGTAAATCTGTTGTTGAT
TTTATCTTCCGTGGAGACGCTGAGCCCACGATTGAGGAGGTAGCTGATTC
AGAAATGAAAGAGAAATTGAAAGAACTAAGAGAATGCAATGATCGCGAGT
TGTTTGAAAATCAAATGAAGGTCTTCTTTGAAAGATTTGACTCCGGGTTT
GTCGCAGCCACTGTATCATACGAAGAGAAAGATAACTTGTTAAAGACGAT
GGCGCGTCACCACGTAATTTCTTGTGCACATGAAGAAATAACCCAATACA
TCACAGGCATCAGAATTGGTCACGTTCTATCAGCTCTAAAATGTCATGAA
AGCAAGTTTCTAAAAGAGTTTATCTACGATGAGAAACTAATCACAGCAGA
CTGCATCAAGAGAATTTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047839-exon-scaffold_138-1575043694:58833..59724 | TCONS_00047839-exon-scaffold_138-1575043694:58833..59724 | Clytia hemisphaerica | exon |
| TCONS_00047839-exon-scaffold_138-1575043694:57725..57756 | TCONS_00047839-exon-scaffold_138-1575043694:57725..57756 | Clytia hemisphaerica | exon |
| TCONS_00047839-exon-scaffold_138-1510915933:58833..59724 | TCONS_00047839-exon-scaffold_138-1510915933:58833..59724 | Clytia hemisphaerica | exon |
| TCONS_00047839-exon-scaffold_138-1510915933:57725..57756 | TCONS_00047839-exon-scaffold_138-1510915933:57725..57756 | Clytia hemisphaerica | exon |
| TCONS_00047839-exon-scaffold_138-1491911889:58833..59724 | TCONS_00047839-exon-scaffold_138-1491911889:58833..59724 | Clytia hemisphaerica | exon |
| TCONS_00047839-exon-scaffold_138-1491911889:57725..57756 | TCONS_00047839-exon-scaffold_138-1491911889:57725..57756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_138 | supercontig | scaffold_138:57725..59724 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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