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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047835 ID=TCONS_00047835|Name=TCONS_00047835|organism=Clytia hemisphaerica|type=transcript|length=983bp
TAACGTTCATCATATTTAGTTGATGTGTTCTCTTGCTAATTTGATCATGT
ATAAAGCCCTGGGATTTTAGTATTCTCGAACTCCCAGAGTTGTACCAAAT
GGTTCCAACAAGGTTCACTTGTGACCAAAttataactttttatcatttta
gtgACTGACAGATACATTTTTGCAAAGTGGGAAAACAGAGGCACCTACAC
CTGGCttgcaaaagaagaaagaaaaaaagagactGTACCTGGCTATTCAA
ACTGTTGAAGGGCTGCATGCAAACTACAGGAGCTGCTTGTTGAATATCCT
GGATTTTACATTTTGGATCATAGTCGTCTTAGTCAGCCAACTTCAACTTA
TGTGTGGACAGGTCGTTTTGATggttttttctattatttagattattgtt
atttaaaattttgtctttttagatTTTAGCTGGATTTGATTTGGATAAAT
TCCCTATATTTTTTgtggaatttcgaaaaacaatTAATCAagcagaaaaa
gtaaataaacatacATAAACAACAGAAAGGATACCTCTTACCTTTGCACT
TGTGACAAATTATATGATCTCAATACATTTGCTAGTAGATATTTATCTTT
TGATGATAGTTCATTATATgattaaattatgttaaaatattttatatatt
aatatattatggtttttgttgaaaaacatACATTTTGTAGCtgataaaaa
aagctaaaattgacAACTGGTGCTAGATTTCTCCCTATACTTACCTTACC
TTATTTGCAGCTATATAGACTTTCATTGAAGTAAACCTTTCTTTAGAACG
TGAGAAAGTGAACAGTATATTTCAAGAGAGCTAAtatctaagaaaaaatt
tccaaaagactCGAGCTGTCAAGGAAAATAGCagccattttttcatattt
gtcTCTCTGCCCATTCTACTTTCGTATTCAAGCACTTTTTTACGGCATTG
ATTATATCTTTTTGAATAAAACACCGATTGTTT Run BLAST on NCBI transcript from alignment at scaffold_138:21334..22476+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047835 ID=TCONS_00047835|Name=TCONS_00047835|organism=Clytia hemisphaerica|type=transcript|length=1143bp|location=Sequence derived from alignment at scaffold_138:21334..22476+ (Clytia hemisphaerica)
TAACGTTCATCATATTTAGTTGATGTGTTCTCTTGCTAATTTGATCATGT
ATAAAGCCCTGGGATTTTAGTATTCTCGAACTCCCAGAGTTGTACCAAAT
GGTTCCAACAAGGTTCACTTGTGACCAAAttataactttttatcatttta
gtgACTGACAGATACATTTTTGCAAAGTGGGAAAACAGAGGCACCTACAC
CTGGCttgcaaaagaagaaagaaaaaaagagactGTACCTGGCTATTCAA
ACTGTTGAAGGGCTGCATGCAAACTACAGGTTATTGTTATGATTTTGCAT
TCAAAGGTTAATTTTAATCAATCAATGTTTCTGTGAGTGCTCCTGGCCTT
GCATGTTTTAgaggtgtttttttttaatatagaaAACCGACATTTTCTCA
GTCTTTCAATCAGaccttttttcacttttcatcttgCAGGAGCTGCTTGT
TGAATATCCTGGATTTTACATTTTGGATCATAGTCGTCTTAGTCAGCCAA
CTTCAACTTATGTGTGGACAGGTCGTTTTGATggttttttctattattta
gattattgttatttaaaattttgtctttttagatTTTAGCTGGATTTGAT
TTGGATAAATTCCCTATATTTTTTgtggaatttcgaaaaacaatTAATCA
agcagaaaaagtaaataaacatacATAAACAACAGAAAGGATACCTCTTA
CCTTTGCACTTGTGACAAATTATATGATCTCAATACATTTGCTAGTAGAT
ATTTATCTTTTGATGATAGTTCATTATATgattaaattatgttaaaatat
tttatatattaatatattatggtttttgttgaaaaacatACATTTTGTAG
CtgataaaaaaagctaaaattgacAACTGGTGCTAGATTTCTCCCTATAC
TTACCTTACCTTATTTGCAGCTATATAGACTTTCATTGAAGTAAACCTTT
CTTTAGAACGTGAGAAAGTGAACAGTATATTTCAAGAGAGCTAAtatcta
agaaaaaatttccaaaagactCGAGCTGTCAAGGAAAATAGCagccattt
tttcatatttgtcTCTCTGCCCATTCTACTTTCGTATTCAAGCACTTTTT
TACGGCATTGATTATATCTTTTTGAATAAAACACCGATTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047835-exon-scaffold_138-1491911889:21334..21612 | TCONS_00047835-exon-scaffold_138-1491911889:21334..21612 | Clytia hemisphaerica | exon |
| TCONS_00047835-exon-scaffold_138-1510915933:21334..21612 | TCONS_00047835-exon-scaffold_138-1510915933:21334..21612 | Clytia hemisphaerica | exon |
| TCONS_00047835-exon-scaffold_138-1575043694:21334..21612 | TCONS_00047835-exon-scaffold_138-1575043694:21334..21612 | Clytia hemisphaerica | exon |
| TCONS_00047835-exon-scaffold_138-1491911889:21773..22476 | TCONS_00047835-exon-scaffold_138-1491911889:21773..22476 | Clytia hemisphaerica | exon |
| TCONS_00047835-exon-scaffold_138-1510915933:21773..22476 | TCONS_00047835-exon-scaffold_138-1510915933:21773..22476 | Clytia hemisphaerica | exon |
| TCONS_00047835-exon-scaffold_138-1575043694:21773..22476 | TCONS_00047835-exon-scaffold_138-1575043694:21773..22476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_138 | supercontig | scaffold_138:21334..22476 + |
Blast
The following BLAST results are available for this feature:
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