TCONS_00047831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047831
Unique NameTCONS_00047831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047831 ID=TCONS_00047831|Name=TCONS_00047831|organism=Clytia hemisphaerica|type=transcript|length=687bp
gatgcAACCAGTATTATTTTAAACGTATATTTATTTGTTATCTTAACTGA
CATACAGGCTGTTCTCTTTTAGATAGGGTTTTTTCACGAGCATCCAGTGG
AGGATGCCCCTTTGCCCCACAAATGGGGAATGTTGCTGTTAACCCTGTTG
CTGTTGCTGTTGAACTAATTACCACGCTAGCAGCCAATCTTAAATGACCC
CCCTCAACCACCACACCAACCAATCATAAATTAACCTCCTTAACTACCAC
GCTACCGCCACGTTttaccaccaccaccaccacgcTACCGACCACTTGAC
GACCCCTGATATTATGAATACCCTCACTACCCTTACCCATGGCAttaatt
ttggttttatttctttttgtttactaTAGTACTTCGAATAATGGGGAACG
CCCAAGCTGTTGCTGTTAACCCTGTTGCTGTTGCTGTTGCTGTTCCTGAA
CCTCCTCAACCACCACGCCAGCAGCCAATTATAAATCAACCTCCTCAACG
ACCACACTGGCAACCAAACGATGGAAATGTTTGGTTAACTTATTTTCATA
TCAattgaaattgtcaaaaatctttttattatctaatttagtttatttta
atttaaagaatagaaattatttcaaaagcatttatttattttatgcaACC
AATATTTTGTTAAACGTATACTCATTTGTAATCTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_137:68403..69089

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047831 ID=TCONS_00047831|Name=TCONS_00047831|organism=Clytia hemisphaerica|type=transcript|length=687bp|location=Sequence derived from alignment at scaffold_137:68403..69089 (Clytia hemisphaerica)
ATAAGATTACAAATGAGTATACGTTTAACAAAATATTGGTtgcataaaat
aaataaatgcttttgaaataatttctattctttaaattaaaataaactaa
attagataataaaaagatttttgacaatttcaatTGATATGAAAATAAGT
TAACCAAACATTTCCATCGTTTGGTTGCCAGTGTGGTCGTTGAGGAGGTT
GATTTATAATTGGCTGCTGGCGTGGTGGTTGAGGAGGTTCAGGAACAGCA
ACAGCAACAGCAACAGGGTTAACAGCAACAGCTTGGGCGTTCCCCATTAT
TCGAAGTACTAtagtaaacaaaaagaaataaaaccaaaattaaTGCCATG
GGTAAGGGTAGTGAGGGTATTCATAATATCAGGGGTCGTCAAGTGGTCGG
TAgcgtggtggtggtggtggtaaAACGTGGCGGTAGCGTGGTAGTTAAGG
AGGTTAATTTATGATTGGTTGGTGTGGTGGTTGAGGGGGGTCATTTAAGA
TTGGCTGCTAGCGTGGTAATTAGTTCAACAGCAACAGCAACAGGGTTAAC
AGCAACATTCCCCATTTGTGGGGCAAAGGGGCATCCTCCACTGGATGCTC
GTGAAAAAACCCTATCTAAAAGAGAACAGCCTGTATGTCAGTTAAGATAA
CAAATAAATATACGTTTAAAATAATACTGGTTgcatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030441XLOC_030441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047831-exon-scaffold_137-1491911889:68403..69089TCONS_00047831-exon-scaffold_137-1491911889:68403..69089Clytia hemisphaericaexon
TCONS_00047831-exon-scaffold_137-1510915933:68403..69089TCONS_00047831-exon-scaffold_137-1510915933:68403..69089Clytia hemisphaericaexon
TCONS_00047831-exon-scaffold_137-1575043694:68403..69089TCONS_00047831-exon-scaffold_137-1575043694:68403..69089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_137supercontigscaffold_137:68403..69089 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.222664	0.361887	0.420185	0.164434	0.500457	0.395468	0.572539	0.268002	0.12509	0.154944	0.150392	0.0494309	0.0987244	0.358842	0.0842905	0.180913	0.0557176	0.399761	0	0.165124	0.502329	0.420032	0	0.0773688	0.318752	0.284479	0.203544	0.217228	0.247139	0.167864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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