TCONS_00047829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047829
Unique NameTCONS_00047829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047829 ID=TCONS_00047829|Name=TCONS_00047829|organism=Clytia hemisphaerica|type=transcript|length=591bp
agaacattctaagaggAGGATTTTGATACCTTTTGACTGAAGTTACGTCA
CATTTCTCAGCAGCCAATCTTAAATGACCCCTTCAACTACCACACTAACC
AATAAACAATGAAGCCCCTCAACCACCACTGTACCACCACCACGCTACCG
ACCATTTGACGACCCTCCACCATATCAACCACTCGACAATCCCCACTACT
ACGAATATCCTTACTACCCTTACCCTTAttaattttggttttatttgtca
ttatcttattattttattttttctatcttATTTCGATACTTTTGGTATAT
CAAAGAAGACGTGTAATGTGAAATTCCGAGTTGAACAAACCTTTTACTCT
TTTATTTTAGAGTCGATTAGAAAAGACAGACTAATTGTCAACTTGAGAAG
AGTGAGTGACCACATTAAGCAATTATTGAGTAATTAAAACAATGAATTTA
TGGATGACACAATTACAGAATAGAATAATTTGAGTTATACTGCTAATCCT
AGAAAAATTGTACTTTTAGTAAAATTTTATGCCGGTTGGAAAGTAAATTA
TTggttatttcatttttattacaaTGGAAATTGTCAAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_137:65596..66186

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047829 ID=TCONS_00047829|Name=TCONS_00047829|organism=Clytia hemisphaerica|type=transcript|length=591bp|location=Sequence derived from alignment at scaffold_137:65596..66186 (Clytia hemisphaerica)
CTTTTTGACAATTTCCAttgtaataaaaatgaaataaccAATAATTTACT
TTCCAACCGGCATAAAATTTTACTAAAAGTACAATTTTTCTAGGATTAGC
AGTATAACTCAAATTATTCTATTCTGTAATTGTGTCATCCATAAATTCAT
TGTTTTAATTACTCAATAATTGCTTAATGTGGTCACTCACTCTTCTCAAG
TTGACAATTAGTCTGTCTTTTCTAATCGACTCTAAAATAAAAGAGTAAAA
GGTTTGTTCAACTCGGAATTTCACATTACACGTCTTCTTTGATATACCAA
AAGTATCGAAATaagatagaaaaaataaaataataagataatgacaaata
aaaccaaaattaaTAAGGGTAAGGGTAGTAAGGATATTCGTAGTAGTGGG
GATTGTCGAGTGGTTGATATGGTGGAGGGTCGTCAAATGGTCGGTAGCGT
GGTGGTGGTACAGTGGTGGTTGAGGGGCTTCATTGTTTATTGGTTAGTGT
GGTAGTTGAAGGGGTCATTTAAGATTGGCTGCTGAGAAATGTGACGTAAC
TTCAGTCAAAAGGTATCAAAATCCTcctcttagaatgttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030439XLOC_030439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047829-exon-scaffold_137-1491911889:65596..66186TCONS_00047829-exon-scaffold_137-1491911889:65596..66186Clytia hemisphaericaexon
TCONS_00047829-exon-scaffold_137-1510915933:65596..66186TCONS_00047829-exon-scaffold_137-1510915933:65596..66186Clytia hemisphaericaexon
TCONS_00047829-exon-scaffold_137-1575043694:65596..66186TCONS_00047829-exon-scaffold_137-1575043694:65596..66186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_137supercontigscaffold_137:65596..66186 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278621	0.543399	0	0.102879	0.876717	0.197941	0.358211	1.00606	0.469577	0.0969412	0.0940935	0.0618533	0.247069	0.064146	0.369157	0.113189	0.20916	0.0714607	0	0.413242	0.359182	0.788384	0.212974	0.387249	0.398857	0.444963	0	0.271819	0.309248	0.315074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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