TCONS_00047827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047827
Unique NameTCONS_00047827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length658

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047827 ID=TCONS_00047827|Name=TCONS_00047827|organism=Clytia hemisphaerica|type=transcript|length=658bp
GGGAAACgggttccaccgggtctgtgacgcAGGAGTGTTGTGCGCACCTT
TGTAATCAGGTGGCTAAgcacttttgacaaaaaaaatgtgACCAAATTCT
CACTTGAAATAGTGGATGCAAATCCTAGACAactcactgaaaaaaaaaca
aatatcccTAACGTAAAGATTTGTTGTAACAAAGTTAATCTGAGTTAAAT
CCGAGTTTCAAGTTTGGGGCATAGTCAATTCCAACAGTCTTCGAAAACGT
GTAATGTGAAATTCCTAGTTGAACAAACCTTTTACCTTTTATTTCTAGAA
TCGATAAGAAAGGACCGGAATATTGTGAACCTAAGAAAAGTGAGTGATAT
AACTTTGTAATTTACATTAATAGAGTTCTACAACGCACCACATTACGTAC
TTATTGAGTAATTAAGACACTGGGCTTTTGTGTTAACACTTGGTGTTAGA
ATTTTAAGGTTTGGGGCGACtacttgaaacatttttcaaattgtttcact
tTGATGTAAAAGTTACTAACGGCCCCACATCGAATGACAGAAAGGAATCC
TAAACAAATCGATATCTGAAACAAATGTTTAAAAATACTTATCAGCTGTT
TCCATCTAGACAGAAGCTGATGCAGAAAATCTTTACAACGAGATATCTCT
GAAACGAC
Run BLAST on NCBI

transcript from alignment at scaffold_137:18649..19306

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047827 ID=TCONS_00047827|Name=TCONS_00047827|organism=Clytia hemisphaerica|type=transcript|length=658bp|location=Sequence derived from alignment at scaffold_137:18649..19306 (Clytia hemisphaerica)
GTCGTTTCAGAGATATCTCGTTGTAAAGATTTTCTGCATCAGCTTCTGTC
TAGATGGAAACAGCTGATAAGTATTTTTAAACATTTGTTTCAGATATCGA
TTTGTTTAGGATTCCTTTCTGTCATTCGATGTGGGGCCGTTAGTAACTTT
TACATCAaagtgaaacaatttgaaaaatgtttcaagtaGTCGCCCCAAAC
CTTAAAATTCTAACACCAAGTGTTAACACAAAAGCCCAGTGTCTTAATTA
CTCAATAAGTACGTAATGTGGTGCGTTGTAGAACTCTATTAATGTAAATT
ACAAAGTTATATCACTCACTTTTCTTAGGTTCACAATATTCCGGTCCTTT
CTTATCGATTCTAGAAATAAAAGGTAAAAGGTTTGTTCAACTAGGAATTT
CACATTACACGTTTTCGAAGACTGTTGGAATTGACTATGCCCCAAACTTG
AAACTCGGATTTAACTCAGATTAACTTTGTTACAACAAATCTTTACGTTA
gggatatttgtttttttttcagtgagtTGTCTAGGATTTGCATCCACTAT
TTCAAGTGAGAATTTGGTcacattttttttgtcaaaagtgcTTAGCCACC
TGATTACAAAGGTGCGCACAACACTCCTgcgtcacagacccggtggaacc
cGTTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030437XLOC_030437Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047827-exon-scaffold_137-1491911889:18649..19306TCONS_00047827-exon-scaffold_137-1491911889:18649..19306Clytia hemisphaericaexon
TCONS_00047827-exon-scaffold_137-1510915933:18649..19306TCONS_00047827-exon-scaffold_137-1510915933:18649..19306Clytia hemisphaericaexon
TCONS_00047827-exon-scaffold_137-1575043694:18649..19306TCONS_00047827-exon-scaffold_137-1575043694:18649..19306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_137supercontigscaffold_137:18649..19306 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15803	0.0770521	0	0.262582	0.639337	0.336808	0.406345	0.285312	0.199753	0.164951	0.0800528	0.210494	0.0525504	0	0	0	0	0.121595	0	0	0.305585	0.335371	0.181194	0.0823659	0.33934	0.984271	0.108345	0.115629	0.263102	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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