TCONS_00047824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047824
Unique NameTCONS_00047824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047824 ID=TCONS_00047824|Name=TCONS_00047824|organism=Clytia hemisphaerica|type=transcript|length=768bp
TAGACATCGATAAGAAAGTTGTTTATGTACAGATGATAAGCTTTGCATGT
AGCTATAGTTTTGTTAtagtttttgatgacgttttcaAAGTGTTGCCCCA
AAAACTATTTCTTAATCAAGCATGAAATCCAAATGATAGTTTTATCCCTT
AAAATTCATCACCATTTCTTCCTTAGGCAAACACCCAAcataaaattttc
attcattatatttAACTATCTTAAAGTATCTCCCTCGAATGTAAAATTTT
GACAAGACCACCCACACGTGCATTAGTTGACCTCGAACAACAATCCTACT
CATTAATCAAAACATcagaaaattcaaacaaaaagaaataaaaaagttcg
ATACCATCTTCCTTGGGAATCTGTAATTCTTTCAAATATCCATTCATAAA
TCCATTCTTTCATAAATCCATTCATTTCAGAAACACGATAAGTCTGTCGG
AAGAATCCGTTAGTGCATCTTTACAATCGATAGCAAAACGTAGGAGAGGA
TCAACAATCACGAATTCAATCATCTCAACTTGACCAATCGTTCCACTCAG
TATGATCACATCAACAGCAACTGCGAGACGTCCGACCATCGGCCAACGTC
AGCATATGAAATTAAGTCGAGGTAGGCGTGGTAAGCAAGCAACGTACGTT
GAAAACTACCGATGGTGTAAGGATGAAATAAAATTTCTGTCGCGTTAGAA
TTACCAAGAAGGCTTGCGGAGAGGTATTACTTTTAGCAGAAATCGTCGAC
TCAAGTTCCTCTGTATAG
Run BLAST on NCBI

transcript from alignment at scaffold_137:6317..7084-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047824 ID=TCONS_00047824|Name=TCONS_00047824|organism=Clytia hemisphaerica|type=transcript|length=768bp|location=Sequence derived from alignment at scaffold_137:6317..7084- (Clytia hemisphaerica)
TAGACATCGATAAGAAAGTTGTTTATGTACAGATGATAAGCTTTGCATGT
AGCTATAGTTTTGTTATAGTTTTTGATGACGTTTTCAAAGTGTTGCCCCA
AAAACTATTTCTTAATCAAGCATGAAATCCAAATGATAGTTTTATCCCTT
AAAATTCATCACCATTTCTTCCTTAGGCAAACACCCAACATAAAATTTTC
ATTCATTATATTTAACTATCTTAAAGTATCTCCCTCGAATGTAAAATTTT
GACAAGACCACCCACACGTGCATTAGTTGACCTCGAACAACAATCCTACT
CATTAATCAAAACATCAGAAAATTCAAACAAAAAGAAATAAAAAAGTTCG
ATACCATCTTCCTTGGGAATCTGTAATTCTTTCAAATATCCATTCATAAA
TCCATTCTTTCATAAATCCATTCATTTCAGAAACACGATAAGTCTGTCGG
AAGAATCCGTTAGTGCATCTTTACAATCGATAGCAAAACGTAGGAGAGGA
TCAACAATCACGAATTCAATCATCTCAACTTGACCAATCGTTCCACTCAG
TATGATCACATCAACAGCAACTGCGAGACGTCCGACCATCGGCCAACGTC
AGCATATGAAATTAAGTCGAGGTAGGCGTGGTAAGCAAGCAACGTACGTT
GAAAACTACCGATGGTGTAAGGATGAAATAAAATTTCTGTCGCGTTAGAA
TTACCAAGAAGGCTTGCGGAGAGGTATTACTTTTAGCAGAAATCGTCGAC
TCAAGTTCCTCTGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030435XLOC_030435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047824-exon-scaffold_137-1575043694:6317..7084TCONS_00047824-exon-scaffold_137-1575043694:6317..7084Clytia hemisphaericaexon
TCONS_00047824-exon-scaffold_137-1510915933:6317..7084TCONS_00047824-exon-scaffold_137-1510915933:6317..7084Clytia hemisphaericaexon
TCONS_00047824-exon-scaffold_137-1491911889:6317..7084TCONS_00047824-exon-scaffold_137-1491911889:6317..7084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_137supercontigscaffold_137:6317..7084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4823	20.5173	15.9178	15.611	0.342352	0.47343	0.244788	0.0763893	0.053482	0.784908	0.0643	0	0	0	0	0	0.095288	0	0	0	0.0924119	0	9.6197	6.41946	0	0.121629	0.3481	0.557253	4.2241	7.23513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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