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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047820 ID=TCONS_00047820|Name=TCONS_00047820|organism=Clytia hemisphaerica|type=transcript|length=952bp
gTAGAATTTTCAATTGAGTGCGAATTTATAATGGAGAGTTATTAATCTAA
ATCGACGATGTTCATATGTTCATGTTTGTTTGCTCCTTGTTTGCTCCTCT
GTGTACTCATATCATTTTTCCACATTaactatttcattttcatttgcgGT
CGATCGTTTTCCGAGAATTTGAGCGTGTGGTCCATGAGCACCTTTAGTGA
CGTCAAAAGCGGCTTGGTCATCAAAGGGAGCCGAATGAGCGGCGCAACCA
ACATCAAGTTCGGGTGCTTGATGCGGCATCGATCGAACATCATCCTCTCT
AACACCATGTGCACCATAACAAGCATGATCTTCAAATGGATCTTGATGTG
CGCATGTCCGAGCATCATCATCCAAATTTCGGACACCTTGGTTACCTAGC
AACGGTTCATTCTCGTTGATTTTTGGTTGACAACGTTTTAACATTTGAAG
ACATTTGTTGGATAAATTGTCCATGAATTCGAAATatgattttctcaaat
ttttatcAACGAGGATGGTGATTATCAAGCTGACCATTGGGAAAAGCAAC
ATTGTTGATAGTTGTGGAATTGGAACCGAGAAATCAGTGTATTCATAATA
GTTTTGGTAAAAATCGATGTCAAAGCCTAAATCACAGAGTAAAGTGTTCA
TTGTGGTTGCCACTAAAGAGAACCACACAGTATGGTGTTGAAGTTTATTC
CCGTACGGTCGATTTCTTGATCCGATAAGAATCATCAAAAGAAAGGATAA
AACTGTTAGTATAATTATTCCTATGGCCATGTAGTTTAATCCTACATTAA
AGTCATCTCCTTGATGTTCAATGAGTATAGGGATGCCAAACGTGATAAAG
AAAAATAGTGATTTGAggaaaagatgtattttgtatGTGCCTGTCGGATG
GAAAGTCAGAAAATATCTCATAGCTATGTATGAGATGCAACTTATTTGTT
GA Run BLAST on NCBI protein sequence of TCONS_00047820-protein >TCONS_00047820-protein ID=TCONS_00047820-protein|Name=TCONS_00047820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
QQISCISYIAMRYFLTFHPTGTYKIHLFLKSLFFFITFGIPILIEHQGDD
FNVGLNYMAIGIIILTVLSFLLMILIGSRNRPYGNKLQHHTVWFSLVATT
MNTLLCDLGFDIDFYQNYYEYTDFSVPIPQLSTMLLFPMVSLIITILVDK
NLRKSYFEFMDNLSNKCLQMLKRCQPKINENEPLLGNQGVRNLDDDARTC
AHQDPFEDHACYGAHGVREDDVRSMPHQAPELDVGCAAHSAPFDDQAAFD
VTKGAHGPHAQILGKRSTANENEIVNVEK Run BLAST on NCBI transcript from alignment at scaffold_136:363654..364605 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047820 ID=TCONS_00047820|Name=TCONS_00047820|organism=Clytia hemisphaerica|type=transcript|length=952bp|location=Sequence derived from alignment at scaffold_136:363654..364605 (Clytia hemisphaerica)
TCAACAAATAAGTTGCATCTCATACATAGCTATGAGATATTTTCTGACTT
TCCATCCGACAGGCACatacaaaatacatcttttccTCAAATCACTATTT
TTCTTTATCACGTTTGGCATCCCTATACTCATTGAACATCAAGGAGATGA
CTTTAATGTAGGATTAAACTACATGGCCATAGGAATAATTATACTAACAG
TTTTATCCTTTCTTTTGATGATTCTTATCGGATCAAGAAATCGACCGTAC
GGGAATAAACTTCAACACCATACTGTGTGGTTCTCTTTAGTGGCAACCAC
AATGAACACTTTACTCTGTGATTTAGGCTTTGACATCGATTTTTACCAAA
ACTATTATGAATACACTGATTTCTCGGTTCCAATTCCACAACTATCAACA
ATGTTGCTTTTCCCAATGGTCAGCTTGATAATCACCATCCTCGTTgataa
aaatttgagaaaatcatATTTCGAATTCATGGACAATTTATCCAACAAAT
GTCTTCAAATGTTAAAACGTTGTCAACCAAAAATCAACGAGAATGAACCG
TTGCTAGGTAACCAAGGTGTCCGAAATTTGGATGATGATGCTCGGACATG
CGCACATCAAGATCCATTTGAAGATCATGCTTGTTATGGTGCACATGGTG
TTAGAGAGGATGATGTTCGATCGATGCCGCATCAAGCACCCGAACTTGAT
GTTGGTTGCGCCGCTCATTCGGCTCCCTTTGATGACCAAGCCGCTTTTGA
CGTCACTAAAGGTGCTCATGGACCACACGCTCAAATTCTCGGAAAACGAT
CGACcgcaaatgaaaatgaaatagttAATGTGGAAAAATGATATGAGTAC
ACAGAGGAGCAAACAAGGAGCAAACAAACATGAACATATGAACATCGTCG
ATTTAGATTAATAACTCTCCATTATAAATTCGCACTCAATTGAAAATTCT
Ac Coding sequence (CDS) from alignment at scaffold_136:363654..364605 >TCONS_00047820 ID=TCONS_00047820|Name=TCONS_00047820|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_136:363654..364605 (Clytia hemisphaerica)
CAACAAATAAGTTGCATCTCATACATAGCTATGAGATATTTTCTGACTTT
CCATCCGACAGGCACatacaaaatacatcttttccTCAAATCACTATTTT
TCTTTATCACGTTTGGCATCCCTATACTCATTGAACATCAAGGAGATGAC
TTTAATGTAGGATTAAACTACATGGCCATAGGAATAATTATACTAACAGT
TTTATCCTTTCTTTTGATGATTCTTATCGGATCAAGAAATCGACCGTACG
GGAATAAACTTCAACACCATACTGTGTGGTTCTCTTTAGTGGCAACCACA
ATGAACACTTTACTCTGTGATTTAGGCTTTGACATCGATTTTTACCAAAA
CTATTATGAATACACTGATTTCTCGGTTCCAATTCCACAACTATCAACAA
TGTTGCTTTTCCCAATGGTCAGCTTGATAATCACCATCCTCGTTgataaa
aatttgagaaaatcatATTTCGAATTCATGGACAATTTATCCAACAAATG
TCTTCAAATGTTAAAACGTTGTCAACCAAAAATCAACGAGAATGAACCGT
TGCTAGGTAACCAAGGTGTCCGAAATTTGGATGATGATGCTCGGACATGC
GCACATCAAGATCCATTTGAAGATCATGCTTGTTATGGTGCACATGGTGT
TAGAGAGGATGATGTTCGATCGATGCCGCATCAAGCACCCGAACTTGATG
TTGGTTGCGCCGCTCATTCGGCTCCCTTTGATGACCAAGCCGCTTTTGAC
GTCACTAAAGGTGCTCATGGACCACACGCTCAAATTCTCGGAAAACGATC
GACcgcaaatgaaaatgaaatagttAATGTGGAAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047820-exon-scaffold_136-1491911889:363654..364605 | TCONS_00047820-exon-scaffold_136-1491911889:363654..364605 | Clytia hemisphaerica | exon |
| TCONS_00047820-exon-scaffold_136-1510915933:363654..364605 | TCONS_00047820-exon-scaffold_136-1510915933:363654..364605 | Clytia hemisphaerica | exon |
| TCONS_00047820-exon-scaffold_136-1575043694:363654..364605 | TCONS_00047820-exon-scaffold_136-1575043694:363654..364605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:363654..364605 . |
Blast
The following BLAST results are available for this feature:
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