TCONS_00047799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047799
Unique NameTCONS_00047799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047799 ID=TCONS_00047799|Name=TCONS_00047799|organism=Clytia hemisphaerica|type=transcript|length=379bp
AAGTCTATGGACACGTAGTAAAGGTACGCTAATAGATTTCAATCAACATC
AATTCTGTTTCTCCAATTAAgcaataaatatcaaataagCGTAACATAAA
TAACATCAAATAACTTAGTAACTCTGGCATGTAATTAACGATAGTCTCTG
TTCAAGTCCTTCTCCTTCAAGTTCTCCTTTTTAAGTCCTTTTTATTCGAG
CTCTCCTTTCCAAGTCTTCTTCCTTCGAGCTCTTTCTCCCAAGTCCTTTT
CCTTCGAGCTCTTCCTACCAAGTCCTcgatttctttccttttctcgCTCA
TGTTTGCTCGCCCTATTCAGGGGTCTGGGCTCGAGGGCCTGAGCCCCACT
CTATTGATTTCTATTCATCTTTCAGTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_136:245216..249124-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047799 ID=TCONS_00047799|Name=TCONS_00047799|organism=Clytia hemisphaerica|type=transcript|length=3909bp|location=Sequence derived from alignment at scaffold_136:245216..249124- (Clytia hemisphaerica)
AAGTCTATGGACACGTAGTAAAGGTACGCTAATAGATTTCAATCAACATC
AATTCTGTTTCTCCAATTAAGCAATAAATATCAAATAAGCGTAACATAAA
TAATATCAAATAACTTAGTAACTCTGGCATGTAATTAACGATAGTCTCTG
TTCAAGTCCTTCTCCTTCAAGTTCTCCTTTTTAAGTCCTTTTCATTCGAG
CTCTCCTTTCCAAGTCTTCTTCCTTCGAGCTCTTTCTCCCAAGTCCTTTT
CCTTCGAGCTCTTCCTACCAAGTCCTCGATTTCTTTCCTTTTCTCGCTCA
TGTTTGCTCGCCCTATTCAGGGGTCTGGGCTCGAGGGCCTGAGCCCCACT
CTATTGATTTCTATTCATCTTTCAGTTCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGAGGCATTATCATTCGTAACTTTTGT
TCGATCACCTCGGATACTTGTTCATCGAGATCTCTTTCACCGGCGTACTC
ATTTAATGACACTCGTCTTGGTGTTGCACCGGAAAATTGGACAGTATGCT
AATTTGTCGATCTTTTCGTTCAGCTCTTTGAATAGTTTGGTGGAGTTCAC
ATTATAATTCGGCTTGATTGTGTTCTCCAATCTGATGTAAGCCACTGCTT
CATTGAAGGTTTTGAATCTCTTTAAAATGACTGATATTCGTAAACCGTCA
TTCAGTCCGGCGATGAGTGAGTCCAATTTCTGCTCATTGTTATAATTTAA
TTGATGAACTAGATTTTCGAGTTTTTCAATGTAGACATTTAGTGATGAAC
ATTCCTCTTGTTTGAGTTTGGCTAGTTCCGCTTTCTTTAACATTCTGATA
TCGGACGACCAGAAGTAGTTCAGCAACATCTCTTTATCAGCTTGTATGAA
GGCTTCACGCCTGCTGGTAGCGCTCTGTAATAGTGCATCGCGTGACCTTG
TAAGCCATATGCTGTTAGAACGTTCAAACGTTCTTTGGAGCTCCACTTGC
CAATGGTTGCTATGCTCTCGAAACGTTCGAAATAGCTTTTGATATTTTTA
TTACTGGTTCCATTGAATTGTGGTATATCGTCCAAAGTCATTTGGATTAC
GTTCATCTTGAAGATGTTCGTCATTACTTGCTTGTTTTCGCTTTCATCGA
CACTGTCGTTTTAGCGAGTTGCATGTTGAATGATTTATAAGTAGTCGAAA
TGTGTTACCTCTAGATGCTGTATTCCTCTTGCCTAGTTTCCTTTACTTAT
TTATCTTTCCATTCATCACAAAATCGAAATCAAAATTTACTGCACAATGT
TAGGTATTATTTTACTTGAATCAATTGTAACCAATGCTTGGTTACGGCAA
AGGTTCACTGCGTTCAAGTTTGTTGAATAATTGATACCGAGAGTTCGACG
TTAAACTTCTCTTCTCGTTGACTTTAAATAATTGATTTTGTGTAAAACTC
TCGTTTTGATAGTTTTTAATACTTTCTGATGTAAAATCACTTTTGTCCTT
TTCAAAATAACGTGTCCTTAATCGCGAAATCAACCAAACTACCAATCAAC
AATAGTTCAGTTTCTGTGGTGTAATCTTTTATTGTTCTTGTTCCTTGGTG
TAATGTAGCTCTCTCCTTTCGGATCTTTGATTCTTGCGAAGCGAGTTCTT
CTGGTTCACCTTCAGTGTAACGAAGGGACTTTAGGTCTTTTTCCAATTAA
GTAATATTTATCAAATAAGCGTAACATAAATAACATCAAATAACTTAGTA
ACTCTGGCATGTAATTAACGATAGTCTCTGTTCAAGTCCTTCTCCTTCAA
GTTCTCCTTTTTAAGTCCTTTTTATTCGAGCTCTCCTTTCCAAGTCTTCT
TCCTTCGAGCTCTTTCTCCCAAGTCCTTTTCCTTCGAGCTCTTCCTACCA
AGTCCTCGATTTCTTTCCTTTTCTCGCTCATGTTTGCTCGCCCTATTCAG
GGGTCTGGGCTCGAGGGCCTGAGCCCCACTCTATTGATTTCTATTCATCT
TTCAGTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030415XLOC_030415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047799-exon-scaffold_136-1575043694:249030..249124TCONS_00047799-exon-scaffold_136-1575043694:249030..249124Clytia hemisphaericaexon
TCONS_00047799-exon-scaffold_136-1575043694:245216..245499TCONS_00047799-exon-scaffold_136-1575043694:245216..245499Clytia hemisphaericaexon
TCONS_00047799-exon-scaffold_136-1510915933:249030..249124TCONS_00047799-exon-scaffold_136-1510915933:249030..249124Clytia hemisphaericaexon
TCONS_00047799-exon-scaffold_136-1510915933:245216..245499TCONS_00047799-exon-scaffold_136-1510915933:245216..245499Clytia hemisphaericaexon
TCONS_00047799-exon-scaffold_136-1491911889:249030..249124TCONS_00047799-exon-scaffold_136-1491911889:249030..249124Clytia hemisphaericaexon
TCONS_00047799-exon-scaffold_136-1491911889:245216..245499TCONS_00047799-exon-scaffold_136-1491911889:245216..245499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:245216..249124 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.528766	0.934338	2.9346	2.52315	6.41984	1.6285	2.62544	4.42947	0.257151	0.994281	1.00968	2.16492	11.766	10.3489	6.77858	7.94138	2.53424	3.77681	9.22337	7.48259	10.7229	4.16294	4.83464	4.62358	9.79656	9.93099	4.86805	4.03357	7.37551	6.23843
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top