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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047795 ID=TCONS_00047795|Name=TCONS_00047795|organism=Clytia hemisphaerica|type=transcript|length=2887bpRun BLAST on NCBI protein sequence of TCONS_00047795-protein >TCONS_00047795-protein ID=TCONS_00047795-protein|Name=TCONS_00047795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=877bp CKMNFIISFSIFFILLHPSKSQDAIVNGTWAPWGDWGGCDKPCGTGFRYRRun BLAST on NCBI transcript from alignment at scaffold_136:244200..274162- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047795 ID=TCONS_00047795|Name=TCONS_00047795|organism=Clytia hemisphaerica|type=transcript|length=29963bp|location=Sequence derived from alignment at scaffold_136:244200..274162- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_136:244200..274162- >TCONS_00047795 ID=TCONS_00047795|Name=TCONS_00047795|organism=Clytia hemisphaerica|type=CDS|length=36876bp|location=Sequence derived from alignment at scaffold_136:244200..274162- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00047795 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 182.185 bits (461), Expect = 2.059e-46 Identity = 143/403 (35.48%), Postives = 183/403 (45.41%), Query Frame = 2
Query: 77 VNGTWAPWGDWGGCDKPCGTGFRYRWRKCTNPAPQNGGLDCAGDYREHKTCNTNLCERELGGTWRTTKLCKREQGYCLGPNGRKPSRRGVRELSSEMRGWKIWERKNCMQKCLQTRGITACEMPFGSYRTHDYSRYWT-NKGCYGHTAPVTRGNGYEKTYCWVLSKCKTDGVWSQWSSWTGCPVCGPSGQRNRTRTCTDPEPLYGGSDCPKTDKHTEIENCEKKPPCPIHGKWSKWGFWGKCXXXXXXXXXXXXXXXXNPAPQHGGLDCTDSDTAVQNCNTKPCPVDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASXXXXXXXXXXXXXNPEPQHGGLNCADSDSVVRNCNAKPC 1282
V+G ++ W W C CG G + R R C P P NGG C G E + C C + G+W W +WE C + C RG + +R T N H GN E C + C G WS W W C G + R R C +P P +GGS C + T+++ C ++ CPIHGKW+ W W CS SCG G + RTR C++P PQ+GG C SD CN+ PCP G WS W WG CS +C+ GQ R RTC NP P GG C DS +I+RC + +CP +DG W W SW +CSASCG G++TR R C +P P GG C + V CN + C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP--VDGSWSE---------------------------------WSLWEE--CTRSC--GRG--------------NQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAE--TQMQVCNERN-CPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDS--QIQRCNTDMCP---VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 The following BLAST results are available for this feature:
BLAST of TCONS_00047795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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