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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047792 ID=TCONS_00047792|Name=TCONS_00047792|organism=Clytia hemisphaerica|type=transcript|length=2353bpRun BLAST on NCBI transcript from alignment at scaffold_136:244200..259247- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047792 ID=TCONS_00047792|Name=TCONS_00047792|organism=Clytia hemisphaerica|type=transcript|length=15048bp|location=Sequence derived from alignment at scaffold_136:244200..259247- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047792 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 1.058e-18 Identity = 55/118 (46.61%), Postives = 68/118 (57.63%), Query Frame = 2
Query: 215 VDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASXXXXXXXXXXXXXNPEPQHGGLNCADSDSVVRNCNAKPC 568
+ GKW+ W SW CS SC G + RTR C++PVPQYGG C D +++ C S CP+ G WS WS WG CS +C GQ R RTC NP P +GG C DS ++ CN C
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDF--CNSDPCPTH---GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 2 Score: 90.1225 bits (222), Expect = 3.888e-18 Identity = 55/118 (46.61%), Postives = 68/118 (57.63%), Query Frame = 2
Query: 215 VDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASXXXXXXXXXXXXXNPEPQHGGLNCADSDSVVRNCNAKPC 568
V G WS W WG CS SC G QTR R C NP P +GG C +++ ++ C CP I GKW+ W+SW CS SCG G + RTR C++P PQ+GG C SD CN+ PC
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQV--CNERNCP---IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 3 Score: 87.4261 bits (215), Expect = 2.399e-17 Identity = 55/118 (46.61%), Postives = 68/118 (57.63%), Query Frame = 2
Query: 221 GKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASXXXXXXXXXXXXXNPEPQHGGLNCADSDSVVRNCNAKPCLG 574
G WS W WG CS +C+ GQ R RTC NP P GG C DS +I+RC + +CP +DG W W SW +CSASCG G++TR R C +P P GG C + V CN + C G
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDS--QIQRCNTDMCP---VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870 HSP 4 Score: 85.1149 bits (209), Expect = 1.280e-16 Identity = 55/118 (46.61%), Postives = 67/118 (56.78%), Query Frame = 2
Query: 215 VDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASXXXXXXXXXXXXXNPEPQHGGLNCADSDSVVRNCNAKPC 568
VDG WS+W W +C+ SC G QTRTRTC NP Q+GG C + EI C C P+ G WS W WG CS SCG G QTR R C NP P GG C +++ ++ CN + C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPC---PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 5 Score: 83.1889 bits (204), Expect = 4.617e-16 Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 2
Query: 203 IHFSVDGKWSKWGSWGKCSASCSTGQQTRTRTCTNPVPQYGGLDCTDIDSKNEIRRCTSHLCPSEPIDGKWSDWSSWGKCSASXXXXXXXXXXXXXNPEPQHGGLNCADSDSVVRNCNAKPC 568
+ V G +S+W +W CS +C G Q R+R C P+P GG C D E+R C + CP +DG WS+WS W +C+ SCG G QTRTRTC NP QHGG C + + CN +PC
Sbjct: 4524 VIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL--EMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 The following BLAST results are available for this feature:
BLAST of TCONS_00047792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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