TCONS_00047759 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047759
Unique Name	TCONS_00047759
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1369

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_136:63612..70710-

transcript sequence

>TCONS_00047759 ID=TCONS_00047759|Name=TCONS_00047759|organism=Clytia hemisphaerica|type=transcript|length=1369bp
ATTTGCTTATGGCTCCCGGGAAATTTTATGTGTGCAAATTTTCAagtcct
ttgtttttatctctTTTAGCCTCAAGATGTCCCAGATGCCAATGCAACAG
TTCTGTATGTTGGAAATTTGGATAAAAGAGTTACAGACGCTATGATGATA
AATATTCTCAAAACTGGACTTGGACatattgaaaacaaaattcttGCATG
CAATATGTTTCCTGGTGATATGAATAATCCAGATGGTTATTGCTTTGTCC
AATTTGAAGATAACAATGCTGCTTGTCAAGCAATGACATTTTTGAATGGT
CGTGATTTTTGTGGAAAGAAAGTGAAAGTTAATTGGGCAACAAATACAAC
AACAGGAGGACCTCCAAAAGTTATTGGcaCAAGTGTCACAATATATGTTG
GAAACTTGGATGACACCATTGACGAGAATGACTTAAGAACTGCCTTTGAA
GTCTTTGGAGAAATCATAAATATCAAAGTTGTCAGGGATCCAGTCACaaa
caaaagtaaaaacatAGGATTCATCTCTTACACAAACAAACCTGATGCTG
AAAAAGCTATCAGAGACATGAACCAGGCTATGTTGAAAACAAGGAGCATC
AAGACAAATTGGGCAACAAGAAATCAAAACCAAAAGCGAGAGGAGTTAGA
CTATGATGAAGTATTCCGAGAAACAGAAACAACCAATTGCACGGTTTACG
TTGGTGGGATCCCTGTTAATTGTCAAGATGCACAAATCAGAAGACATTTT
GAAGATCATGGAAAAGTTACTGATGTTAGGATCTTTCCTGCCAAAAACTA
CGCATTTGTTAGATTCGAATCACACGCTGCCGCAGCTACAGCAATCGTTA
AAACGAACGGAAGTGATTTAATGGGATCAACCTTAAAGTGTTGGTGGGGT
AAAGAAGGACCCGAAGGAGGTAGCAGCCGTCCACACAACAATTACAACAA
CTCTCACCATGGTGGTGGATACAACAAAGATCACACACACGCCATGCAAA
ACATGACTCCtcaacagcaacaacaataTATGCAACAATATATGCAATAC
AATCCATACTACCAACAACAATATTATCAATACTGGATGCAACAATATCA
ATATCAACAACAGATGCAACAAAATGGCGGCGGTGCTGGGGGCAACCCTG
CAGCCAGTGGTGGTAACTATCAACAAAACGGTTACCAAGGTTACGGTCAA
CAAAGTGCTGGAAGTAACCAAGGAGGCGATCACCAACAACAAAGTTATCA
ACAACAAAACTAACCgactttatttttttaacgAACTGCTTGCGCGCTTG
TAAATAGGTTTTGCTTTCATTGTTACAAACCCAACTACACCAACAACTTG
TGTCGATTttataaagaag

Run BLAST on NCBI

transcript from alignment at scaffold_136:63612..70710-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047759 ID=TCONS_00047759|Name=TCONS_00047759|organism=Clytia hemisphaerica|type=transcript|length=7099bp|location=Sequence derived from alignment at scaffold_136:63612..70710- (Clytia hemisphaerica)
ATTTGCTTATGGCTCCCGGGAAATTTTATGTGTGCAAATTTTCAAGTCCT
TTGTTTTTATCTCTTTTAGCCTCAAGATGTCCCAGATGCCAATGCAACAG
TTCTGTAAGTTCCCATCTAAAGAAATTGTAATGAAGGCAATGATTCAGGG
ATTTGTTTAAAGGCCAGGGCAAACCAGTTCAACATTTCATCCAACATGAC
TTTCCAATGTTGGATGAAATGTTGGATGGAAAACTCCTGTTGGTTGAAGC
AAAACTTCAGGTTTGTGGGACTTTTTTAAAAAACCATTCAACAATAATTA
GTTCATTCATTCTTTCAAAATAAAATGGCGTCAATTCAGACAATGAAAAA
CCAACCAGACAGTCTAAACTTAAACTCCTATATCAGGGTTAGAAACTAGG
CTGGTCTTACCTCTTTTATCTTTTCCTTTATAACAATTCAATGCTCACAA
CACATGTGTACATGTACATTGACAAGTAATCCCTCAGAAGTTTATTCCGA
AATCTGCAACAATAACAAAAGTTGTCTCTTCTACTGATTGCTTCCCAGCG
CTCCTTCACAGCTGTTTATCAAATTTCCACCAATAAGGTTGCCGCATTTC
AAACGGCCCTTCTCTTTGGCATCCGTTGCCTCTCAGTGCCTTGCACAACG
AGCGGCTGTAAAATCCCACCCTTCATATATTTGTTTCAATCTGTCATTTG
TGGCTTGGATTTTTTCCCCTCCTCAATTTACTGAAAAAAGCTGAGCAAAT
CCCTTTGTTTGTCCTGTACTCGTTAGGTGCTCAAAGGATACATAGCATCT
CGAAGAGTTGTTAGGTTCGTTGGGTAGATTCAGCAAACAAAGACAAAATG
AACGAAAATTTCGTTAACATTTTAATGAAAAGAAAGGCGCTGTGGTATAT
GGTCATTGACCTTGGTTGCTGCACAGGTGACTGAGGTTCGATTCCCACTC
GCAGCGGTTCACTTGGCAAGTGAATAAACCTTCGCCCGGGTCAACCCATG
CCATGTGAGGGGAATTGGGTAGTCAGTTCAAGGTACTGACGGGGCGCTAA
TTGAAAGCGTCTATAGTTGCGAAAATTGGCCTCTAAGCCTCCTGCGACTC
AACCAAATAGAAAAAGAAAAGAGAAACTATTTTGACAAATTTGTCTCACA
GCTAGATTGTGACAAGAATCCTCATGTATTAGAAATCTTAAATGTTGGGT
CATATACTTAAGGTCCCGATAAACATAGCTAACTGAGGCCATAAATACAA
AACATAGAAAATATGATGATGACTATGGTTCTTGGATTGGATTAGCAGTT
AAAAAATTGTAGTCAAGTGGTCCTTTCCAACAAACATTGCTCAATAATGA
ATATTTATAAATGGAAGTAATTCTTTTATAGGTATGTTGGAAATTTGGAT
AAAAGAGTTACAGACGCTATGATGATAAATATTCTCAAAACTGGACTTGG
ACATATTGAAAACAAAATTCTTGCATGCAATATGTTTCCTGGTGATATGG
TAATAATTATCTTATTAAAAAAGGAAATCTAAAGGGTGAATTAGTGAAAA
TGTCCAACTTTTATATATTAANTTATTAAAAAAGGAAATCTAAAGGGTGA
ATTAGTGAAAATGTTCAACTTTTATATATTAATTATTAAGGCTTGCATTA
TCCTGAATTAAGGAAGTTCAAGGTATATTGAATATAAGCCTATCAAGTCA
CCAAAATCACCCATGCCGACATAATAATGAATTTCCATCATATTTCAAAT
TTGTATTTCTGTTTCAGAATAATCCAGATGGTTATTGCTTTGTCCAATTT
GAAGATAACAATGCTGCTTGTCAAGCAATGACATTTTTGAATGGTCGTGA
TTTTTGTGGAAAGGTAACAAATCCTTATGGCAGGGAAATATCCTGAATGA
ATGTAACAGTGGATAATTTGAGATTCATGTGGGCAAAACCTAAATCAACA
ATGAGACCTTTCTATCATGAAAAATGAAATTTTTTTTTTAAGAAACACAC
TTTTAAGAAACATGAGGCTCAAAATGCCTAAAAACTAAGAAACATCTAAG
AAACATGCTGAGGCTGAGAATGAGAAAATAACATTTTTTAATTCGTTTTT
TTTAAGAACCTTCCAATCAAAAGAAATTTTTTTTCTTTGCATGAAATTAG
GCTGATTATGTCAAAAAGTGTAGAAACATTTAAGGCTCAAAAGGCCGATT
TTTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAAAAG
AATGTGTATATTTATTTTTTTTCCACAGAAAGTGAAAGTTAATTGGGCAA
CAAATACAACAACAGGAGGACCTCCAAAAGTTATTGGCAGTAAATATTTT
TTAATTTATTAATGCATTTTATTTTCTGTATGCCACCTGACTGCTACTCT
GTACCACAGTGTACCTGGCGTTTATCGCTTCTTAGTACACTCTAGGTGCT
CACTGTCTGTTTAATTAAAAATTCCTGTCTAGAGACCTCTGCGATGAAGT
ATGATTTTAAAATAGCAACCACTTCTCTCATGGTCTCCCCTCTCTCACCA
ACACTCCATTGCAGCAGTCGGTTTGAAAAATCTCAAATGAGAAAAGACAA
TGACAACAGACCCTCTACGGCAATGAATTTTGAAATAAGCCGTAGATACT
GAGTTTGTGTACATACAACCTGACTGCCTGTTATTTTAAACTAAGCAGTG
CTAGAGTTTAATTAAAATTTCATGTTGGAATCAAAATTGAAAAAAANCAG
TGTTTAAAGTTCTTCCGTCTCAGACGGATTTCCGTCTTAGCAAGGTGCAA
AAAGAGGCTTTTCCGTCACCAAATTCAACAAAAATTCAGCAAAACATGAA
GAATCTGGCCAGATTTGTTGTTTAAAGTCTATTTCCGTCTGTGATGAAAA
CTTTGCTTTGACCACTGTATTTTAAACTAAGTAGTGCTAGAGTATAATTA
AAATTTCATGTTGAAATCAAAATTGAAAAAAACTTTTACTTGTTTTACTT
TTAGCAAGTGTCACAATATATGTTGGAAACTTGGATGACACCATTGACGA
GAATGACTTAAGAACTGCCTTTGAAGTCTTTGGAGAAATCATGTAAGTTT
TTCTTTAACTCATTAGTTGTCACTTTTATTAATCCTTTTTCCATCTTCAT
ATTTTCTTGTTTTTATATCAATATCAATTTAAAACTTTCAAATTTATTTT
TTCATAAATTGCTAAATGATAATTTTATCATCTCATAATTATTGTAGATG
GCTCCAACAAAAATGAAAACATCAAAGCAACCTGAATTGCAAAAGAGTAA
ATCTCTATAGTTATTCTATTTGTCTCATTTTTTCTTTTTTATTTCTTTTT
CATTATTTCAATTTTTTGGTATTTCATTATGCCTTTCTTTTACTTAATTA
TTACTTTTTGTTATTTTAGTTTAGACTTCTTGTAAAAGTGCATTTTGTTA
TTTTTAAGTTTAAATCCTTCTTTCAGAAATATCAAAGTTGTCAGGGATCC
AGTCACAAACAAAAGTAAAAACATAGGATTCATCTCTTACACAAACAAAC
CTGTGAGTACTTTCTATCTGTGAGTGTGAATCTATTTATATTGTTTTTGT
ATTTCCCATGTGTTAAATTGTGACTCCTTCAGAAAAGAATCAACTTTTTA
AAAAGGTCATAAAAAGATTCTTTGTATTTGCAGCTGAAGTTTTAATCTCA
ACTTTTAATGTTTTTTTGGTGCATGAAAGACAAGGTTAAAATATCATGAA
TTTGCAAGGTGAAAAACGATTATTTTAGGATGCTGAAAAAGCTATCAGAG
ACATGAACCAGGCTATGTTGAAAACAAGGAGCATCAAGACAAATTGGGCA
ACAAGAAATCAAAACCAAAAGCGAGGTATGTTTTTTGCTTTTTTTAAAAC
TATTAACAATGGCTTGGAAACGACTCACAGAAAACATTAAAGAATGAAAT
TTGTAATCAGCTTTGATTAGAAAGTTAAATTCTACATGATCCAGAGTGTC
ATTACTAAAATCTCAAAAAAAAAATCATAAAGTATTATGGGTAACCAAAT
AGATGGCATGCAAAGGGAAAAAGCAACCTTCGAGTTAGAATACTTGAATT
GGATTAACTTCCACAAAATTAAATTTTGCAAAGAAAATGTGTGAGATTGC
TGACTTGCAAGATTAAATCAACGTGAAATTAAAAAAACTCTTTTTCAGTG
GAGGAACCAGTCAAAACACTATTCATGCCAAAAAATGAAAATTTTCAGCT
TTTTTCAGGCTCGTTTTCTAGATTAAGTCTGCACAGAATTTTTCGAAACA
ATTAACTTGCAAAATTAAATCGAAAAAATTTCGTGATTTCTTTATCCAAT
TAAAGTAATAGCAATTTTAGTCGAAGTCTTCATTCAACGGTAGAATTTCA
TTTCCTTAAATTTTCAGCAAATAAAATGATTTTTTTTTTCTTAAAATATT
TCTCTCTGCAGAGGAGTTAGACTATGATGAAGTATTCCGAGAAACAGAAA
CAACCAATTGCACGGTTTACGTTGGTGGGATCCCTGTTAATTGTCAAGGT
ATACAATGTCTGATTAATCTTCAGCAATCACTATATTTTTCAAAGTAAAC
TACCTTTCTTTCTATAGTGTTATGTTCGTTTTATGGCCAGGCCATGGCGT
ACAGAGTGCATTCGATTTGTTTTAAAGTCAATATGAAAAATTGTTAGCTC
TTTGGAAAATTCTCGAAATTCTTCTGTCTGCAGTTTGCTTTCATATTTTT
ATTATTTTCTAAATAGATGCACAAATCAGAAGACATTTTGAAGATCATGG
AAAAGTTACTGATGTTAGGATCTTTCCTGCCAAAAACTACGCATTTGTTA
GGTAAATATTTTCTGCAAATCAAAAGGGTTACAGTCACAAAATGATCGTT
TTAGGTAAATTCCTAGATATTTGCTTTCAAATGACTGAAATGACTGACGA
TTTCAGGTGTAAAACTTTCTCTACCATGTTGAAATTCTATTTAGTCTGTT
AAAAAAAAGTAGATAGTAAAATTTAAGCGGTTTTGATTAAAGCCAAATCG
ACAGTATAAAAAGTGAGGTCTGGATCGCTGTAAAAAGTGTTGAGCTTGCA
AAAACAGTTTGTAAAACGAATGATCAAAACAAATTTCTTCGTCTTAGATT
CGAATCACACGCTGCCGCAGCTACAGCAATCGTTAAAACGAACGGAAGTG
ATTTAATGGGATCAACCTTAAAGGTAATGCAAAACTTATCACTTTCTTTT
GTCACAGCAGGCAAACAATGGCTAAAGCTATAGAACTTAGATTTCTTTAA
AAAGATCTCAAACTTTGCCTGAATCATTGCATTTTGTTGTGAAGAAGCAT
TGAGTTTGGAATTAGATTTGGCCGGTCAAAAATGTTGTTTAACAAGTGTT
GTTTGGCACTTATTTGGTTCAATATCATGCAAAACTTAACTGAAAATCAA
CAGTTTTGCAAACAAAGAAATTCTCACCCTAAGAGAATTTAAAGGGGAAT
TAACGTTTGGAATTAACCCTGAAATTTGTTTTCCAAACATTAAAGAGGAA
GAAAAATGTGATCGAACAAAAAAGAACCACTTCAAAATGTCTTTTATTCA
TTGAGTTATTAATCTTTAATTTCTCACAATTTTGACTCTACAATGGAGAA
AAACTCCCCCTCTGTGTATTTTTTGACGTAAAGTGCACTGCAACTATTCT
CACTGTTACACTCTATGTAAAAGAGATATAAAACGTTAGAAATGAATCTT
TTTTAGAGTAATTATAGCAAAACGTCGAAGACATAAAACTAGGAGAATGT
AGTTAGTATTCCAAAGGTGCAGTAAATTCACTGACGGTAAAAAGAAACTC
AAAAACTGCATATAAAAAAGAGAAACACAGTTCGCACCCTATGTCACATT
TTTCGTATCGATAGCAACACAAGGGAATTTTCAAAGAACTCTTATTGGGT
TCTTCCAGAAAAAAATTGTAAATGGGGGGTGGAGGATATAACAATTTTTA
GTGATTTACCCCCCGAACAGAGTGACTTTTGGCCCCCCAGACAATAGGTT
TTACACCCCGGACAATCATCTGTTGACCCCCCAGACAGAGCAAATTTTGA
TTTTTTGCTACCCCCTGGACAAAATATCCTCCACCCCCCATGTACAATTT
TTTTCTGGAAGAGCCCATTCCGGATGTAGAAGAGTAAAGCCCTATAAACC
ATATATATTTGAAATCGTCTCAATGAGCTCTACAGTATTTGAATCTGTCA
TTTGTTTGTTGACAAATTTGAAACATTAATTCCCCTTTAAACTTGACTTT
TTCTTAATAACAGTGTTGGTGGGGTAAAGAAGGACCCGAAGGAGGTAGCA
GCCGTCCACACAACAATTACAACAACTCTCACCATGGTGGTGGATACAAC
AAAGATCACACACACGCCATGCAAAACATGACTCCTCAACAGCAACAACA
ATATATGCAACAATATATGGTGAGTGAAACAAATCCTTTCATATAGAACA
CCTCCCCCCTATTTTTAAGGGTTGACATCTAAAAAAAACTTTCCCTTTCT
TCTTAAGGAAATGTTAGAATCCATATCCTCTTACTTTCTAAAGTAACTTT
CTTGTATCCGGCAGTCAAAACATTAAATTTCAAAGACTGTGATGCCCAGA
TACACTATGAAGCCATATTTACTTTTCAATAGCCACTATTCTCTATTCTC
TAAGAGCTCTTTTCACACAACAGATAATTGAATGAGAGTAAAAATAATTT
TCTCATGTGTATCTATTCCAGCAGCAATACAATCCATACTACCAACAACA
ATATTATCAATACTGGATGCAACAATATCAATATCAACAACAGATGCAAC
AAAATGGCGGCGGTGCTGGGGGCAACCCTGCAGCCAGTGGTGGTAACTAT
CAACAAAACGGTTACCAAGGTTACGGTCAACAAAGTGCTGGAAGTAACCA
AGGAGGCGATCACCAACAACAAAGTTATCAACAACAAAACTAACCGACTT
TATTTTTTTAACGAACTGCTTGCGCGCTTGTAAATAGGTTTTGCTTTCAT
TGTTACAAACCCAACTACACCAACAACTTGTGTCGATTTTATAAAGAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030407	XLOC_030407	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_136	supercontig	scaffold_136:63612..70710 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
241.327	238.783	321.645	327.851	211.013	154.275	174.433	172.979	224.778	217.169	350.227	336.433	379.027	366.656	296.095	299.992	240.065	298.36	191.694	230.398	314.348	305.743	249.981	262.824	268.427	280.334	265.295	321.376	188.024	199.555

Blast

[Close]

BLAST of TCONS_00047759 vs. Swiss-Prot (Human)
Match: TIAR (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.150e-61
Identity = 112/284 (39.44%), Postives = 164/284 (57.75%), Query Frame = 1

Query:   85 DANATVLYVGNLDKRVTDAMMINILKTGLGHIENKILACNMFPGDMNNPDGYCFVQFEDNNAACQAMTFLNGRDFCGKKVKVNWATNTTTGGPPKVIGTSVTIYVGNLDDTIDENDLRTAFEVFGEIINIKVVRDPVTNKSKNIGFISYTNKPDAEKAIRDMNQAMLKTRSIKTNWATRN-------QNQKREELDYDEVFRETETTNCTVYVGGIPVNCQDAQIRRHFEDHGKVTDVRIFPAKNYAFVRFESHAAAATAIVKTNGSDLMGSTLKCWWGKEGPE 915
            D     LYVGNL + VT+ +++ +  + +G  +    +C M     +N D YCFV+F ++  A  A+  +NGR   GK+VKVNWAT  T     K       ++VG+L   I   D+++AF  FG+I + +VV+D  T KSK  GF+S+ NK DAE AI  M    L  R I+TNWATR        Q    ++L +++V  ++   NCTVY GGI     D  +R+ F   G++ ++R+FP K Y+FVRF +H +AA AIV  NG+ + G  +KC+WGKE P+
Sbjct:    5 DGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCK----SCKMITEHTSN-DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 280

The following BLAST results are available for this feature:

BLAST of TCONS_00047759 vs. Swiss-Prot (Human)

BLAST of TCONS_00047759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TIAR	1.150e-61	39.44	Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=...	[more]

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TCONS_00047759 (transcript) - C. hemisphaerica