TCONS_00047758 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047758
Unique Name	TCONS_00047758
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1358

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_136:63612..70696-

transcript sequence

>TCONS_00047758 ID=TCONS_00047758|Name=TCONS_00047758|organism=Clytia hemisphaerica|type=transcript|length=1358bp
CCCGGGAAATTTTATGTGTGCAAATTTTCAagtcctttgtttttatctct
TTTAGCCTCAAGATGTCCCAGATGCCAATGCAACAGTTCTGTATGTTGGA
AATTTGGATAAAAGAGTTACAGACGCTATGATGATAAATATTCTCAAAAC
TGGACTTGGACatattgaaaacaaaattcttGCATGCAATATGTTTCCTG
GTGATATGAATAATCCAGATGGTTATTGCTTTGTCCAATTTGAAGATAAC
AATGCTGCTTGTCAAGCAATGACATTTTTGAATGGTCGTGATTTTTGTGG
AAAGAAAGTGAAAGTTAATTGGGCAACAAATACAACAACAGGAGGACCTC
CAAAAGTTATTGGcaCAAGTGTCACAATATATGTTGGAAACTTGGATGAC
ACCATTGACGAGAATGACTTAAGAACTGCCTTTGAAGTCTTTGGAGAAAT
CATAAATATCAAAGTTGTCAGGGATCCAGTCACaaacaaaagtaaaaaca
tAGGATTCATCTCTTACACAAACAAACCTGATGCTGAAAAAGCTATCAGA
GACATGAACCAGGCTATGTTGAAAACAAGGAGCATCAAGACAAATTGGGC
AACAAGAAATCAAAACCAAAAGCGAGAGGAGTTAGACTATGATGAAGTAT
TCCGAGAAACAGAAACAACCAATTGCACGGTTTACGTTGGTGGGATCCCT
GTTAATTGTCAAGATGCACAAATCAGAAGACATTTTGAAGATCATGGAAA
AGTTACTGATGTTAGGATCTTTCCTGCCAAAAACTACGCATTTGTTAGAT
TCGAATCACACGCTGCCGCAGCTACAGCAATCGTTAAAACGAACGGAAGT
GATTTAATGGGATCAACCTTAAAGTGTTGGTGGGGTAAAGAAGGACCCGA
AGGAGGTAGCAGCCGTCCACACAACAATTACAACAACTCTCACCATGGTG
GTGGATACAACAAAGATCACACACACGCCATGCAAAACATGACTCCtcaa
cagcaacaacaataTATGCAACAATATATGCAGCAATACAATCCATACTA
CCAACAACAATATTATCAATACTGGATGCAACAATATCAATATCAACAAC
AGATGCAACAAAATGGCGGCGGTGCTGGGGGCAACCCTGCAGCCAGTGGT
GGTAACTATCAACAAAACGGTTACCAAGGTTACGGTCAACAAAGTGCTGG
AAGTAACCAAGGAGGCGATCACCAACAACAAAGTTATCAACAACAAAACT
AACCgactttatttttttaacgAACTGCTTGCGCGCTTGTAAATAGGTTT
TGCTTTCATTGTTACAAACCCAACTACACCAACAACTTGTGTCGATTtta
taaagaag

Run BLAST on NCBI

transcript from alignment at scaffold_136:63612..70696-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047758 ID=TCONS_00047758|Name=TCONS_00047758|organism=Clytia hemisphaerica|type=transcript|length=7085bp|location=Sequence derived from alignment at scaffold_136:63612..70696- (Clytia hemisphaerica)
CCCGGGAAATTTTATGTGTGCAAATTTTCAAGTCCTTTGTTTTTATCTCT
TTTAGCCTCAAGATGTCCCAGATGCCAATGCAACAGTTCTGTAAGTTCCC
ATCTAAAGAAATTGTAATGAAGGCAATGATTCAGGGATTTGTTTAAAGGC
CAGGGCAAACCAGTTCAACATTTCATCCAACATGACTTTCCAATGTTGGA
TGAAATGTTGGATGGAAAACTCCTGTTGGTTGAAGCAAAACTTCAGGTTT
GTGGGACTTTTTTAAAAAACCATTCAACAATAATTAGTTCATTCATTCTT
TCAAAATAAAATGGCGTCAATTCAGACAATGAAAAACCAACCAGACAGTC
TAAACTTAAACTCCTATATCAGGGTTAGAAACTAGGCTGGTCTTACCTCT
TTTATCTTTTCCTTTATAACAATTCAATGCTCACAACACATGTGTACATG
TACATTGACAAGTAATCCCTCAGAAGTTTATTCCGAAATCTGCAACAATA
ACAAAAGTTGTCTCTTCTACTGATTGCTTCCCAGCGCTCCTTCACAGCTG
TTTATCAAATTTCCACCAATAAGGTTGCCGCATTTCAAACGGCCCTTCTC
TTTGGCATCCGTTGCCTCTCAGTGCCTTGCACAACGAGCGGCTGTAAAAT
CCCACCCTTCATATATTTGTTTCAATCTGTCATTTGTGGCTTGGATTTTT
TCCCCTCCTCAATTTACTGAAAAAAGCTGAGCAAATCCCTTTGTTTGTCC
TGTACTCGTTAGGTGCTCAAAGGATACATAGCATCTCGAAGAGTTGTTAG
GTTCGTTGGGTAGATTCAGCAAACAAAGACAAAATGAACGAAAATTTCGT
TAACATTTTAATGAAAAGAAAGGCGCTGTGGTATATGGTCATTGACCTTG
GTTGCTGCACAGGTGACTGAGGTTCGATTCCCACTCGCAGCGGTTCACTT
GGCAAGTGAATAAACCTTCGCCCGGGTCAACCCATGCCATGTGAGGGGAA
TTGGGTAGTCAGTTCAAGGTACTGACGGGGCGCTAATTGAAAGCGTCTAT
AGTTGCGAAAATTGGCCTCTAAGCCTCCTGCGACTCAACCAAATAGAAAA
AGAAAAGAGAAACTATTTTGACAAATTTGTCTCACAGCTAGATTGTGACA
AGAATCCTCATGTATTAGAAATCTTAAATGTTGGGTCATATACTTAAGGT
CCCGATAAACATAGCTAACTGAGGCCATAAATACAAAACATAGAAAATAT
GATGATGACTATGGTTCTTGGATTGGATTAGCAGTTAAAAAATTGTAGTC
AAGTGGTCCTTTCCAACAAACATTGCTCAATAATGAATATTTATAAATGG
AAGTAATTCTTTTATAGGTATGTTGGAAATTTGGATAAAAGAGTTACAGA
CGCTATGATGATAAATATTCTCAAAACTGGACTTGGACATATTGAAAACA
AAATTCTTGCATGCAATATGTTTCCTGGTGATATGGTAATAATTATCTTA
TTAAAAAAGGAAATCTAAAGGGTGAATTAGTGAAAATGTCCAACTTTTAT
ATATTAANTTATTAAAAAAGGAAATCTAAAGGGTGAATTAGTGAAAATGT
TCAACTTTTATATATTAATTATTAAGGCTTGCATTATCCTGAATTAAGGA
AGTTCAAGGTATATTGAATATAAGCCTATCAAGTCACCAAAATCACCCAT
GCCGACATAATAATGAATTTCCATCATATTTCAAATTTGTATTTCTGTTT
CAGAATAATCCAGATGGTTATTGCTTTGTCCAATTTGAAGATAACAATGC
TGCTTGTCAAGCAATGACATTTTTGAATGGTCGTGATTTTTGTGGAAAGG
TAACAAATCCTTATGGCAGGGAAATATCCTGAATGAATGTAACAGTGGAT
AATTTGAGATTCATGTGGGCAAAACCTAAATCAACAATGAGACCTTTCTA
TCATGAAAAATGAAATTTTTTTTTTAAGAAACACACTTTTAAGAAACATG
AGGCTCAAAATGCCTAAAAACTAAGAAACATCTAAGAAACATGCTGAGGC
TGAGAATGAGAAAATAACATTTTTTAATTCGTTTTTTTTAAGAACCTTCC
AATCAAAAGAAATTTTTTTTCTTTGCATGAAATTAGGCTGATTATGTCAA
AAAGTGTAGAAACATTTAAGGCTCAAAAGGCCGATTTTTTAAGAAACATT
GAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAAAAGAATGTGTATATTTA
TTTTTTTTCCACAGAAAGTGAAAGTTAATTGGGCAACAAATACAACAACA
GGAGGACCTCCAAAAGTTATTGGCAGTAAATATTTTTTAATTTATTAATG
CATTTTATTTTCTGTATGCCACCTGACTGCTACTCTGTACCACAGTGTAC
CTGGCGTTTATCGCTTCTTAGTACACTCTAGGTGCTCACTGTCTGTTTAA
TTAAAAATTCCTGTCTAGAGACCTCTGCGATGAAGTATGATTTTAAAATA
GCAACCACTTCTCTCATGGTCTCCCCTCTCTCACCAACACTCCATTGCAG
CAGTCGGTTTGAAAAATCTCAAATGAGAAAAGACAATGACAACAGACCCT
CTACGGCAATGAATTTTGAAATAAGCCGTAGATACTGAGTTTGTGTACAT
ACAACCTGACTGCCTGTTATTTTAAACTAAGCAGTGCTAGAGTTTAATTA
AAATTTCATGTTGGAATCAAAATTGAAAAAAANCAGTGTTTAAAGTTCTT
CCGTCTCAGACGGATTTCCGTCTTAGCAAGGTGCAAAAAGAGGCTTTTCC
GTCACCAAATTCAACAAAAATTCAGCAAAACATGAAGAATCTGGCCAGAT
TTGTTGTTTAAAGTCTATTTCCGTCTGTGATGAAAACTTTGCTTTGACCA
CTGTATTTTAAACTAAGTAGTGCTAGAGTATAATTAAAATTTCATGTTGA
AATCAAAATTGAAAAAAACTTTTACTTGTTTTACTTTTAGCAAGTGTCAC
AATATATGTTGGAAACTTGGATGACACCATTGACGAGAATGACTTAAGAA
CTGCCTTTGAAGTCTTTGGAGAAATCATGTAAGTTTTTCTTTAACTCATT
AGTTGTCACTTTTATTAATCCTTTTTCCATCTTCATATTTTCTTGTTTTT
ATATCAATATCAATTTAAAACTTTCAAATTTATTTTTTCATAAATTGCTA
AATGATAATTTTATCATCTCATAATTATTGTAGATGGCTCCAACAAAAAT
GAAAACATCAAAGCAACCTGAATTGCAAAAGAGTAAATCTCTATAGTTAT
TCTATTTGTCTCATTTTTTCTTTTTTATTTCTTTTTCATTATTTCAATTT
TTTGGTATTTCATTATGCCTTTCTTTTACTTAATTATTACTTTTTGTTAT
TTTAGTTTAGACTTCTTGTAAAAGTGCATTTTGTTATTTTTAAGTTTAAA
TCCTTCTTTCAGAAATATCAAAGTTGTCAGGGATCCAGTCACAAACAAAA
GTAAAAACATAGGATTCATCTCTTACACAAACAAACCTGTGAGTACTTTC
TATCTGTGAGTGTGAATCTATTTATATTGTTTTTGTATTTCCCATGTGTT
AAATTGTGACTCCTTCAGAAAAGAATCAACTTTTTAAAAAGGTCATAAAA
AGATTCTTTGTATTTGCAGCTGAAGTTTTAATCTCAACTTTTAATGTTTT
TTTGGTGCATGAAAGACAAGGTTAAAATATCATGAATTTGCAAGGTGAAA
AACGATTATTTTAGGATGCTGAAAAAGCTATCAGAGACATGAACCAGGCT
ATGTTGAAAACAAGGAGCATCAAGACAAATTGGGCAACAAGAAATCAAAA
CCAAAAGCGAGGTATGTTTTTTGCTTTTTTTAAAACTATTAACAATGGCT
TGGAAACGACTCACAGAAAACATTAAAGAATGAAATTTGTAATCAGCTTT
GATTAGAAAGTTAAATTCTACATGATCCAGAGTGTCATTACTAAAATCTC
AAAAAAAAAATCATAAAGTATTATGGGTAACCAAATAGATGGCATGCAAA
GGGAAAAAGCAACCTTCGAGTTAGAATACTTGAATTGGATTAACTTCCAC
AAAATTAAATTTTGCAAAGAAAATGTGTGAGATTGCTGACTTGCAAGATT
AAATCAACGTGAAATTAAAAAAACTCTTTTTCAGTGGAGGAACCAGTCAA
AACACTATTCATGCCAAAAAATGAAAATTTTCAGCTTTTTTCAGGCTCGT
TTTCTAGATTAAGTCTGCACAGAATTTTTCGAAACAATTAACTTGCAAAA
TTAAATCGAAAAAATTTCGTGATTTCTTTATCCAATTAAAGTAATAGCAA
TTTTAGTCGAAGTCTTCATTCAACGGTAGAATTTCATTTCCTTAAATTTT
CAGCAAATAAAATGATTTTTTTTTTCTTAAAATATTTCTCTCTGCAGAGG
AGTTAGACTATGATGAAGTATTCCGAGAAACAGAAACAACCAATTGCACG
GTTTACGTTGGTGGGATCCCTGTTAATTGTCAAGGTATACAATGTCTGAT
TAATCTTCAGCAATCACTATATTTTTCAAAGTAAACTACCTTTCTTTCTA
TAGTGTTATGTTCGTTTTATGGCCAGGCCATGGCGTACAGAGTGCATTCG
ATTTGTTTTAAAGTCAATATGAAAAATTGTTAGCTCTTTGGAAAATTCTC
GAAATTCTTCTGTCTGCAGTTTGCTTTCATATTTTTATTATTTTCTAAAT
AGATGCACAAATCAGAAGACATTTTGAAGATCATGGAAAAGTTACTGATG
TTAGGATCTTTCCTGCCAAAAACTACGCATTTGTTAGGTAAATATTTTCT
GCAAATCAAAAGGGTTACAGTCACAAAATGATCGTTTTAGGTAAATTCCT
AGATATTTGCTTTCAAATGACTGAAATGACTGACGATTTCAGGTGTAAAA
CTTTCTCTACCATGTTGAAATTCTATTTAGTCTGTTAAAAAAAAGTAGAT
AGTAAAATTTAAGCGGTTTTGATTAAAGCCAAATCGACAGTATAAAAAGT
GAGGTCTGGATCGCTGTAAAAAGTGTTGAGCTTGCAAAAACAGTTTGTAA
AACGAATGATCAAAACAAATTTCTTCGTCTTAGATTCGAATCACACGCTG
CCGCAGCTACAGCAATCGTTAAAACGAACGGAAGTGATTTAATGGGATCA
ACCTTAAAGGTAATGCAAAACTTATCACTTTCTTTTGTCACAGCAGGCAA
ACAATGGCTAAAGCTATAGAACTTAGATTTCTTTAAAAAGATCTCAAACT
TTGCCTGAATCATTGCATTTTGTTGTGAAGAAGCATTGAGTTTGGAATTA
GATTTGGCCGGTCAAAAATGTTGTTTAACAAGTGTTGTTTGGCACTTATT
TGGTTCAATATCATGCAAAACTTAACTGAAAATCAACAGTTTTGCAAACA
AAGAAATTCTCACCCTAAGAGAATTTAAAGGGGAATTAACGTTTGGAATT
AACCCTGAAATTTGTTTTCCAAACATTAAAGAGGAAGAAAAATGTGATCG
AACAAAAAAGAACCACTTCAAAATGTCTTTTATTCATTGAGTTATTAATC
TTTAATTTCTCACAATTTTGACTCTACAATGGAGAAAAACTCCCCCTCTG
TGTATTTTTTGACGTAAAGTGCACTGCAACTATTCTCACTGTTACACTCT
ATGTAAAAGAGATATAAAACGTTAGAAATGAATCTTTTTTAGAGTAATTA
TAGCAAAACGTCGAAGACATAAAACTAGGAGAATGTAGTTAGTATTCCAA
AGGTGCAGTAAATTCACTGACGGTAAAAAGAAACTCAAAAACTGCATATA
AAAAAGAGAAACACAGTTCGCACCCTATGTCACATTTTTCGTATCGATAG
CAACACAAGGGAATTTTCAAAGAACTCTTATTGGGTTCTTCCAGAAAAAA
ATTGTAAATGGGGGGTGGAGGATATAACAATTTTTAGTGATTTACCCCCC
GAACAGAGTGACTTTTGGCCCCCCAGACAATAGGTTTTACACCCCGGACA
ATCATCTGTTGACCCCCCAGACAGAGCAAATTTTGATTTTTTGCTACCCC
CTGGACAAAATATCCTCCACCCCCCATGTACAATTTTTTTCTGGAAGAGC
CCATTCCGGATGTAGAAGAGTAAAGCCCTATAAACCATATATATTTGAAA
TCGTCTCAATGAGCTCTACAGTATTTGAATCTGTCATTTGTTTGTTGACA
AATTTGAAACATTAATTCCCCTTTAAACTTGACTTTTTCTTAATAACAGT
GTTGGTGGGGTAAAGAAGGACCCGAAGGAGGTAGCAGCCGTCCACACAAC
AATTACAACAACTCTCACCATGGTGGTGGATACAACAAAGATCACACACA
CGCCATGCAAAACATGACTCCTCAACAGCAACAACAATATATGCAACAAT
ATATGGTGAGTGAAACAAATCCTTTCATATAGAACACCTCCCCCCTATTT
TTAAGGGTTGACATCTAAAAAAAACTTTCCCTTTCTTCTTAAGGAAATGT
TAGAATCCATATCCTCTTACTTTCTAAAGTAACTTTCTTGTATCCGGCAG
TCAAAACATTAAATTTCAAAGACTGTGATGCCCAGATACACTATGAAGCC
ATATTTACTTTTCAATAGCCACTATTCTCTATTCTCTAAGAGCTCTTTTC
ACACAACAGATAATTGAATGAGAGTAAAAATAATTTTCTCATGTGTATCT
ATTCCAGCAGCAATACAATCCATACTACCAACAACAATATTATCAATACT
GGATGCAACAATATCAATATCAACAACAGATGCAACAAAATGGCGGCGGT
GCTGGGGGCAACCCTGCAGCCAGTGGTGGTAACTATCAACAAAACGGTTA
CCAAGGTTACGGTCAACAAAGTGCTGGAAGTAACCAAGGAGGCGATCACC
AACAACAAAGTTATCAACAACAAAACTAACCGACTTTATTTTTTTAACGA
ACTGCTTGCGCGCTTGTAAATAGGTTTTGCTTTCATTGTTACAAACCCAA
CTACACCAACAACTTGTGTCGATTTTATAAAGAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030407	XLOC_030407	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_136	supercontig	scaffold_136:63612..70696 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
89.3542	125.529	139.14	56.1138	211.43	153.082	168.935	186.538	188.877	154.703	190.305	275.873	223.052	130.353	223.871	224.085	149.439	203.453	119.071	162.945	199.583	237.376	94.731	142.892	287.923	303.227	130.412	167.828	100.582	132.923

Blast

[Close]

BLAST of TCONS_00047758 vs. Swiss-Prot (Human)
Match: TIAR (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.044e-61
Identity = 112/284 (39.44%), Postives = 164/284 (57.75%), Query Frame = 2

Query:   71 DANATVLYVGNLDKRVTDAMMINILKTGLGHIENKILACNMFPGDMNNPDGYCFVQFEDNNAACQAMTFLNGRDFCGKKVKVNWATNTTTGGPPKVIGTSVTIYVGNLDDTIDENDLRTAFEVFGEIINIKVVRDPVTNKSKNIGFISYTNKPDAEKAIRDMNQAMLKTRSIKTNWATRN-------QNQKREELDYDEVFRETETTNCTVYVGGIPVNCQDAQIRRHFEDHGKVTDVRIFPAKNYAFVRFESHAAAATAIVKTNGSDLMGSTLKCWWGKEGPE 901
            D     LYVGNL + VT+ +++ +  + +G  +    +C M     +N D YCFV+F ++  A  A+  +NGR   GK+VKVNWAT  T     K       ++VG+L   I   D+++AF  FG+I + +VV+D  T KSK  GF+S+ NK DAE AI  M    L  R I+TNWATR        Q    ++L +++V  ++   NCTVY GGI     D  +R+ F   G++ ++R+FP K Y+FVRF +H +AA AIV  NG+ + G  +KC+WGKE P+
Sbjct:    5 DGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCK----SCKMITEHTSN-DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 280

The following BLAST results are available for this feature:

BLAST of TCONS_00047758 vs. Swiss-Prot (Human)

BLAST of TCONS_00047758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TIAR	1.044e-61	39.44	Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=...	[more]

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TCONS_00047758 (transcript) - C. hemisphaerica