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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047753 ID=TCONS_00047753|Name=TCONS_00047753|organism=Clytia hemisphaerica|type=transcript|length=1354bpRun BLAST on NCBI protein sequence of TCONS_00047753-protein >TCONS_00047753-protein ID=TCONS_00047753-protein|Name=TCONS_00047753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp MMINILKTGLGHIENKILACNMFPGDMNNPDGYCFVQFEDNNAACQAMTFRun BLAST on NCBI transcript from alignment at scaffold_136:61169..70648- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047753 ID=TCONS_00047753|Name=TCONS_00047753|organism=Clytia hemisphaerica|type=transcript|length=9480bp|location=Sequence derived from alignment at scaffold_136:61169..70648- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_136:61169..70648- >TCONS_00047753 ID=TCONS_00047753|Name=TCONS_00047753|organism=Clytia hemisphaerica|type=CDS|length=13500bp|location=Sequence derived from alignment at scaffold_136:61169..70648- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047753 vs. Swiss-Prot (Human)
Match: TIAR (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 1.019e-61 Identity = 112/284 (39.44%), Postives = 164/284 (57.75%), Query Frame = 2
Query: 23 DANATVLYVGNLDKRVTDAMMINILKTGLGHIENKILACNMFPGDMNNPDGYCFVQFEDNNAACQAMTFLNGRDFCGKKVKVNWATNTTTGGPPKVIGTSVTIYVGNLDDTIDENDLRTAFEVFGEIINIKVVRDPVTNKSKNIGFISYTNKPDAEKAIRDMNQAMLKTRSIKTNWATRN-------QNQKREELDYDEVFRETETTNCTVYVGGIPVNCQDAQIRRHFEDHGKVTDVRIFPAKNYAFVRFESHAAAATAIVKTNGSDLMGSTLKCWWGKEGPE 853
D LYVGNL + VT+ +++ + + +G + +C M +N D YCFV+F ++ A A+ +NGR GK+VKVNWAT T K ++VG+L I D+++AF FG+I + +VV+D T KSK GF+S+ NK DAE AI M L R I+TNWATR Q ++L +++V ++ NCTVY GGI D +R+ F G++ ++R+FP K Y+FVRF +H +AA AIV NG+ + G +KC+WGKE P+
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCK----SCKMITEHTSN-DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 280 The following BLAST results are available for this feature:
BLAST of TCONS_00047753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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