TCONS_00047753-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047753-protein
Unique Name	TCONS_00047753-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	374

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047753-protein ID=TCONS_00047753-protein|Name=TCONS_00047753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
MMINILKTGLGHIENKILACNMFPGDMNNPDGYCFVQFEDNNAACQAMTF
LNGRDFCGKKVKVNWATNTTTGGPPKVIGTSVTIYVGNLDDTIDENDLRT
AFEVFGEIINIKVVRDPVTNKSKNIGFISYTNKPDAEKAIRDMNQAMLKT
RSIKTNWATRNQNQKREELDYDEVFRETETTNCTVYVGGIPVNCQDAQIR
RHFEDHGKVTDVRIFPAKNYAFVRFESHAAAATAIVKTNGSDLMGSTLKC
WWGKEGPEGGSSRPHNNYNNSHHGGGYNKDHTHAMQNMTPQQQQQYMQQY
MQQYNPYYQQQYYQYWMQQYQYQQQMQQNGGGAGGNPAASGGNYQQNGYQ
GYGQQSAGSNQGGDHQQQSYQQQN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030407	XLOC_030407	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047753	TCONS_00047753	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 184..251 e-value: 1.7E-16 score: 70.8 coord: 83..156 e-value: 2.2E-24 score: 97.0 coord: 4..64 e-value: 0.74 score: 7.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 16..62 e-value: 1.2E-5 score: 24.9 coord: 185..249 e-value: 2.7E-15 score: 55.9 coord: 84..154 e-value: 2.6E-20 score: 71.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 82..160 score: 18.342
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..68 score: 10.36
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 183..255 score: 14.351
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 75..164
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 17..70
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 176..276
None	No IPR available	GENE3D	3.30.70.330		coord: 174..329 e-value: 1.6E-22 score: 79.2
None	No IPR available	GENE3D	3.30.70.330		coord: 76..173 e-value: 7.6E-26 score: 90.3
None	No IPR available	GENE3D	3.30.70.330		coord: 14..75 e-value: 5.8E-11 score: 41.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..374
None	No IPR available	CDD	cd12354	RRM3_TIA1_like	coord: 183..255 e-value: 1.92814E-32 score: 116.181

Blast

[Close]

BLAST of TCONS_00047753-protein vs. Swiss-Prot (Human)
Match: TIAR (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.044e-59
Identity = 102/247 (41.30%), Postives = 145/247 (58.70%), Query Frame = 0

Query:   19 ACNMFPGDMNNPDGYCFVQFEDNNAACQAMTFLNGRDFCGKKVKVNWATNTTTGGPPKVIGTSVTIYVGNLDDTIDENDLRTAFEVFGEIINIKVVRDPVTNKSKNIGFISYTNKPDAEKAIRDMNQAMLKTRSIKTNWATR-------NQNQKREELDYDEVFRETETTNCTVYVGGIPVNCQDAQIRRHFEDHGKVTDVRIFPAKNYAFVRFESHAAAATAIVKTNGSDLMGSTLKCWWGKEGPE 258
            +C M     +N D YCFV+F ++  A  A+  +NGR   GK+VKVNWAT  T     K       ++VG+L   I   D+++AF  FG+I + +VV+D  T KSK  GF+S+ NK DAE AI  M    L  R I+TNWATR        Q    ++L +++V  ++   NCTVY GGI     D  +R+ F   G++ ++R+FP K Y+FVRF +H +AA AIV  NG+ + G  +KC+WGKE P+
Sbjct:   37 SCKMITEHTSN-DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 280

The following BLAST results are available for this feature:

BLAST of TCONS_00047753-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047753-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TIAR	2.044e-59	41.30	Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=...	[more]

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TCONS_00047753-protein (polypeptide) - C. hemisphaerica