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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047737 ID=TCONS_00047737|Name=TCONS_00047737|organism=Clytia hemisphaerica|type=transcript|length=2734bp
GGATGCAGCTTTGAGTTGTGGTCACACTGTACATGGAAAATAATTGTTTA
GACTAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCTGCTACA
CAGTCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAATGAATGA
AAGGGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCTTCTGC
TGTTTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACCATGTCG
CATAGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCCTTCCCT
TGCTGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAGTTGATG
AATTAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAGAGGAC
GCGTTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACATGTACA
AAACAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtgctaaaa
tgaaattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCGACATCT
GTCACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGGACCCAA
TGAAGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTCTTGATA
TTACAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGGGAAGGA
CCTGCACCAGGAACTGGTGAAAAGaaattctGTTCCCAAGTATTTATTGG
AAAGATACCAAGAGACATGTATGAAGATGAATTGGTTCCGCTGTTTGAGC
CTTATGGTCAAATCTATGATTTACGTATTATGGTTGATCCTTTTAGTGGA
CTGAACAAAGGTTATGCATTTGTTACATACAGTACCAAAGAAGGAGCACA
AAGTTCTGTCAAAGCTATGGAGAACCATGAAGTAAGAGGTGGGAAAAAGC
TTGGTGTTTGTCTTTCACAAGCAAATAACAGACTCTTTGTTGGATCTATT
CCTAAGACAAAAACCAAACAAGATATCATGGAAGAATTTAAGACCAAAGT
TGAGGAGTTGACAGATGTTATTATGTACTTTTCTGCAgaggataaaaata
aaaacagaggTTTTGCTTTCCTTGACTTTGCCACACACAAAGATGCTGCT
CAGGCAagacgaaaattgcaaagtgggCGTATCAAGGTTTTTGGACACAT
TACTCCAGCTGTTGATTGGGCTGATTCCATGGATGAACCAAATGATGAAG
TCATGTCTAAGgTGAAAGTTGTCTATGTCAGACATTTATCTCCAGCCATC
GACGAAAACAAATTGAATGAACTTTTCGAACAATATGGTCCTGTTGAGAA
AGTGAAAAAGATTAAGGATTATGCTTTCATTAACTTTGCTAACAGGGATG
ATGCAATGAGAGCTATTGAGGAACTTGATAACCAAGAATTGGACGATTTA
AAAATTTCAGTACAACTTGCTAAACCTCAAGTAGATAAAACAGGTCAACG
ACGTGGGCAATCTGGGTTTGGTGCTCTTAACAAAAAGGGTGAGTCTGACA
ATTTTGTCCCCAGAGGAAGAGGTGGTTTCTCACATGGAGGGAACTACTCT
CAAGGTGGATATAGAGGTTATGGAGATGACTCTTATGATGACTACTATGC
ACCACCAGCCAGACCTCGTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTG
GTGGAGCAATGAGAGGGGGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGT
GGTTTCCGTGGTGCTTCCAGAGGTGGATCATCTAGAGGTGGTACTTATGG
ACAGCAAAGAGGAGGAATGAACAGAGGGCGTGGTGGCTTTGGACGAGGAG
GTTCAGACTATGGATCAGGCAGAGGTGGATCAAGAGGAGGTACTGGTGGT
TATGGCTCAAGAGGACGTGGTGCTGGGGCACCAAAAAGGAAAGCAGATTA
TGGTGGTGATTATGGCACCCCCTCTAAACGTAAGAATGAGTGGAACTCCC
AACCCATTGCCCAACAACCCCTTGGTAACTCATCCAGCAACTATTACAAT
GATGACTACAGTGGCGGTGACTGGTACACAGATTTATCTGAGCCCAGATG
GCAATAAAAATCTTTTctcaaaaacacaagaaaaaggcATACACCAAATA
TTTGGatttaaaactctaaaacaagGCATTGctttaaaactgaaaaaccA
ATGAagcattgatttttttcaagGATAACAACGATCACTAAATTAACCTC
ACGAAGAGTCAAAACGATTCAAATCTGTACAATTGTAAATTTactgaaag
atttttaaaagcTTTCTATGATTTGAGAGGAAACTGAGAGATTAAAACAA
GGACACAAAAGCTCATAAGTTCATACTTGTACAGCCAAAATTTgctgttt
tattttataaaaaaatgtaaaaactggATGGTGCTTATGTGGTGTTGTCg
aaatgtaaaaatatttctttgcatCATTTTACAGGTTTCGCTAACAAAGA
AcatatatttttagtttttaataaACAAAACTTTAGTTCATTCTCTTTCT
TAAATAAAGTGTTGATTTAtgaaaacctttctttttggGGTttgtaaaat
tcaaatttcgaatCAAAGTCTTTGTCTCTTTTGCTTATTCAAAATAAGCT
GACTCCTTTAatttaaatgttaaaaaaattctttacagGGATTCAAATAT
ATtccaaatttcatgtcgaagtgattgttttatc Run BLAST on NCBI transcript from alignment at scaffold_136:8270..21241+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047737 ID=TCONS_00047737|Name=TCONS_00047737|organism=Clytia hemisphaerica|type=transcript|length=12972bp|location=Sequence derived from alignment at scaffold_136:8270..21241+ (Clytia hemisphaerica)
GGATGCAGCTTTGAGTTGTGGTCACACTGTACATGGAAAATAATTGTTTA
GACTAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCTGCTACA
CAGTCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAATGAATGA
AAGGGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCTTCTGC
TGTTTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACCATGTCG
CATAGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCCTTCCCT
TGCTGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAGTTGATG
AATTAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAGAGGAC
GCGTTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACATGTACA
AAACAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtgctaaaa
tgaaattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCGACATCT
GTCACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGGACCCAA
TGAAGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTCTTGATA
TTACAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGGGAAGGA
CCTGCACCAGGAACTGGTGAAAAGGTAATCCCTTGTTGTCTCTTTCCtga
cttttttgtttatttaattttcgagtagtttgagtaaagaagaCAAGTTA
TATAAATTTCATGCTCAAAGTCTAAGTTTCAACAGGATTACAATGGGCTA
TTACAAATTGGTTGAaacaatctaaccttactccagacccgatcaatcga
acttgtcgaaccaatcgcaCAATCGAACTCCATCAAACGAATAAATTtca
atacaccttatcggaaattccacctcctcgcgttgttgctacgcaacact
ttttgggaggtaaacaaagctCGATACTGcgattttcaagcaaaaagcct
tacaaaacacccaaaatattgatgccaaaagagcctccaaatcaactgaa
gaaccaccgaagttcttgtttttctctttcttataGCTTCTGCtatagca
tcttgaaagctgtgttttgtttgtttttttcaaattcagtgtatttttag
gaacataTAAACAAGCCAGATATAAGCAAATGAGTTCTTGTTTTACGCGG
GAACTTTTAGCGCTACTTGCACTGCCATTGGTCccatttatgtttacctc
ccaatttcAACGGATCCATCTTAGCGCGattgtttttgtggaatttccga
tagGCCGAGGGAATTGACATACCAGATTAGCGTCCGCCCGCGTGTGTTTG
GTGTAGCCGcgtaaaaatttcattattttaagaaaatttcattatttcac
aGACAAACCTGAAAATTGAACTCCATCTCCTACAGCTATCATCATTGTCA
CCTAAAGTGCGAAAAATAACAATTTCCTGCGCGTGCGTCATAGCCTCTGT
TCGATCGGGACTTTAGTCCCCGTATACATCACACTACAAAAAATTAAACC
CGCTCTACactaaaagttttctttcaaatcgaACGATCGCGTAAGTCTTT
AATTTTACCGCCGCGGCCTCTGGAATCGATTCTTTTTCCGGTCACGGATA
CTTCAATTTCTGTAACTGCACATGCGCAATACATACCCGAGAAGATGTTT
TCAAAAGGTTGATCGTCTGTGGTGTGGTGGTGTTTGTACAGTGTGGATTT
GTTGCTGTAGAGCCTGTAAtggaaaaataatgaataatgaaaaatgaaaa
tatgccGCATCTAGTTTCAGGCATGCTGGTGACGCTAAACTGGTATGTTA
ATTCCCTCGGCCTATAGAGGACAAagtcaacatttttcaaagaaaatcat
tAGATTGGAAAATATTACTTTTTACGGTCTTGCTTTTCAACTGTTTCTCC
TAAGTCTaataaaaatgtcataaaaagaATTTTGCCCTAACTNAggtgta
tttaaaaaatttattgaacctaatcgaacactcacaatttttgaagcaat
caatagcagttcgattagtttgtcAGTAAAAACTTTGATTAGTTCCAGGA
TATtaggctattccatttttaaaccatacacgttttttttttttataagg
aaccttaactttgctctgagcctggagttccttatttttacagagaattt
cagcctcaaagaacttatcgagttccttatttacatagctgctaagtttg
gattcgcaaaaTATTTAACTTCTTTATAATAGTATAACTtcttctcagcc
tgagcagttccttaacaattccttattttttggaccattttcagcctcgg
gttccttataaacgtgttccttatataaaaaaaaacgtgtatatacaggg
gtattgacaaacGTTTCCAGGAggtctgagccttgattttccaaggggtt
tttggtcattttcagattttccaagggggttattaaaGGTTCCAGgtttt
tccagggggttctcCCCTCCTACCCTCCTAaacctttttcacaaaatttc
actttctaGGGGTGTTNTAAAGGTTCCAGGTGTTTCCAGGGGGTTCTCCC
CTCCTAaacctttttcacaaaatttcactttctaGGGGTGTTGACTCCta
taatttccaggggatagtttgttatcaaagatttccaggggggttagtga
aaaaagttcgtcaatacttctgtacaatttttttttggaatagcccatta
aATCCTCATaatatcttccctcgcttgcaaaaacttaaTCCTGGCATGCT
ATTTcaacagttcccggacttaaccTCCCGGTcctcgacaaaaaactttc
aaattttttatcggcattaggccaataagggggtggggggtccaactaca
taccgataaaaaaacaaatattgggacaaaaatcttttcagccaatttct
ttctgatttcgtccacaaactccactgaaagcatacaatttcacttgctt
tcaccttcGCGCACAAATTAAcaactttaaaagtacagttttgaattagc
tatgataaaaaaacccttttttcattggccagtGTGCTgccatttttttc
gaaatgttGTGATTTCATCGCgtctttttaactttcgttttgattaacaa
tatcaatgcgggtatgaacaaactcaatgttggtgcaaATACATAGACTA
AAATTCAATGATGACGGGTGGAAAGGCAAGAATAATGCAATGGTGGacgt
gattttggaaaaaattgtgttttccaagatgtaaaagttggtttcgaaaa
attttggccgataagagcaagggggagggggtctcaAGCTTATcagccca
atgccgataaaaaattcgaaagatgTTTGTCAAAGACCCCTTACAGTCAA
TACCTTTAGCCAAATTAAAAAAGTCCTGATTAGGAATATGAAGCAAATAC
CTAGTGTTAAATAAGTATTTTCCAACCTAGTGATTGCCGATCCTTGCTTG
ACCGGATGCAATATAAACCAATATAATAAGTCTTCACCAACAAAAATGAA
CACAATCCAATTTGAACCAACACAAGAATCAATTTGAACGATGATCAATa
tcaattgatccaaataccaTTTACAGAATACACATAAAGCCCCTCTGGCT
ATCATATATTATTGTTTATCACTTTGTATTATTCATCTATAATATAAGGT
AGAGATTAACATctagattttctccaaaaatagaaaaaatcgcaTGTTAA
AAAGCACTTCATAAGATTTAGGTGGGAAAGAAAGATTGAGCTCTTGACTT
GCTCGGGGGACCAAGCTACAATTCCACCATCCgcgaatgaaatttttcaa
ttttttgcacagttatCATATTTGGTATACTGAATCTTTTGGTCATACTT
GGAATTTGCAAATGTAGCTCGTTTCAGAGTTAttaaatttttagatattt
cttcctaattaggaataggATTTCTAATTAGTAATCCtggtaaaagtaag
aaaaatgttcctaatttggctaaaggtaTTGAccgggggggggtcaacat
ttataataccaacccatagcccaaaaacctgacttttgagCTAAGacaac
accaccaccccaaaattagtctacacaatagacagatccaggattttagg
ccttactcttggtctataggcactgctataggtggccactagtgaccccc
accgggaattgtttattaataggtttaaagataatagacaacattcacaa
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT
TCCCATTTTTGTAACTTGTCAAGGTCGTTTTGGAGAATAGTGGTGTCGTT
TAGGCTACGAATGATACGGTGTAGGAGTGAGTCGTCAGCAAATAAAGCAA
ATGTGGATTCGGTTGTGAGTGGCAAATCGTTAATATATATGAGAAAGAGT
AATGGGCCCAATACAGATCCCTGTGGTACTCCTGATTCAACTTTTGATTG
TGGGGACGTAGATCCTCGGACAACAACACATTGGGTTCTGTTGGATAGAA
AGTCAGTGATCCACGATAATATCTCATTTCGAATGCCGTAGTGATGTAAT
TTGATGAGTAGCTTTCTGCGGTTAACTTTATCGAAAGCCTTGCTAAAGTC
TAGAAGGACTGAGTCAATCTGTTCACTGTTGTTAAGGGCTTTTGCAAATT
TATCAACTGTTGCTAGTAATTGTGTTTCGCATGAGCGTTGTTTGCGAAAA
CCGTGTTGAGCATCACTAAGTGTACCGTCTTTCTCGAGATGGGTCATGAT
NGAAACACTGCAATAATGTTGATTGAGAAGTTGGGCGATTTCACCATCAT
CTGAGTGGGTTTGTCCATTTTTGTCAATGAGTGGCGCAACTCCGGCAATA
TCATTTCGCTTAGATTtgatatatttaaaaagtttctttttatttcctgT
TACTGTCTCTTTAACGAAATTGTTTTTTGTGGTGTTACAGATCTTTCTAT
AGTGTTTTGCTAAGGTCAAGTATTGCTTTCTTGCGTGTTGTAAAATTGAC
CATTTGAAGACCTGAAGTTTCAAAGACTTCAAGGTATTGTTCGTTTAGTT
CTTTCGAATACTGATTGGAAGTGATACTGTTGGTGTTCCAatctataggc
ggccactagtgacccccaccgggaattgtttattaataggtttaaagata
atagacaacattcacaaaagatgtttatcaatagagattttaaataaaag
aatgtttaaaacacagctgattggcttaggtttcgaaactctattgtttc
attaaaacctcagtgcgcatgcgatttatctggaaaatttcaatattcaa
aacaagagcagtgctcatagcccgaagagtaggagttttacgctcaaaac
gaaggaagatatgacataGCCTACCCCAAAATTggtcgataccaacttga
aaatcataattttcagggAAAgggttggtatcgataccaacatgactttt
tggatttgacaaaatatcatgggacccaccccctaatttaccaataccaa
tctgacaaatttaaGCTTAAAGCTGTTTAgaggggacccaccccctccca
cacaaacagcCCTTGTAAtaagagaattttcaaaaaactcatttttgtaa
tactctttcttcaacacaacacagaaaatgtcatatgctaaaataaaaaa
tgactgaaaactgacaatataataaaaacaaacccaatgaagctagcaaa
atcaatctgaatcaatattatctgaatataattgattATTTTTCTTGCTA
AAAAGAAGAAGTATTGAATTTTCGCTCAAAGACCTCACAGATTCCAGACA
GTTTATTAGTTTAAATTATGGACTTGCACATTTTGCAAACCAAATTAGCT
TAAAATGGCTTGTTTATTCGATTTGAatactttcgaatgttttaaaattt
cgaatattttttcgaaaattcgaatGTCTTTTgcccatttgaaattcgaa
ttttcacaaaaagaaaaataaggttTCTTTACTCTGGTTTGTTTGATACT
TACACTACATCCTGCTTGATCAAGTTTGCTTTGGTGTTAGAGTTTTACCT
TAATACAAAAACGACCAAGATAATAAAGAAATGCAGACTGTTTAATTTTT
TCAGGGTATtagctataagggcaaaaattaggaaagttttgctgtcattt
tgatatggatatcaactttctgaatcatcttatttaaaaaaaggggtacc
caccccctattttggtatcaatacaaACCAtgaggataactctttttttt
ctaaaaaaagggggacccacccccatcaataccaacttgacttttcagac
ttttaaaggaaaaaatgacaccaccacccggctatggctggtatctggat
gttgacccccctGTATTGACATTTGTTGTAttcggatatttgtctatcca
gAATAAAGTGTTTCGATTTCGCGCGCCGAGtagtggcggaatactacgcc
ccaacaaaccaCCTCTGGCGCTAAAGGAtgcaggaaaagtgtgtaacccg
ttatcggaagtaatttcccaaTTTACGTTatgaatttggctttgaaaaga
ggCTAATATTGGTTTAtcaaactgatcgaaccgatcaaacttaatcgaac
actcacaatctttaaaaaatcttagagctcgattaaattttttaatcaaa
ctttaatcattCAATGGagttcaattagtttgattgtttccacaagttcg
attgatcaggTCTGGCTCACTCGAACacatcgaatattacccaggaatcg
gcctttcgattgagattcaattgactatcgacaatcgaattgcaattatt
cgattgcgttcaattgattggCGTTtaattgacaccgtctggcccTCTGg
cagtctaagcttaaactcctatatcaggaatagaaactaggctagtctta
cctctttcaGTCAcagaaatccttgcatttgcatgGGGTGTGCCTTTGCA
ACGgtttcaacaattttttccaacccctgCAAGTGAGCTAGAACGTGTAA
GGCAAAATGCACGAAAATTATCAAATCtcaactttaaaatgaaaatgaca
taAAACGAAGACGaatggcattttcattttttttctttagaagattcttt
agcctttttagaaaatttttgtctacaggttaaaatttttatctgtgcat
ttttttataatcaagtgaaacatttttccactcTGTGTAAATGGAACGGG
TTGCAGTGATCGAGTGTAATTGCACGGGGTTTTTTCGTCACTTTGGTTTT
CAACCCATTGCATTTGCCGCATGTCGAACCCTGTAGTTTTTCTAGAAACC
GACCAGGTGAAAGATAATAATTTTTTGACCCgaccgcagactatgggtta
aTCTATATggtcaggggggggggcacgcagttactctacaagacatgatg
tgtagtaagtgctttttcaacactttttttcaggaccaccaccctttgca
gttactacaccttggtagtaactgttttcagaaaagatttccaggtacca
cccctgtttttgagtgatatcatcaaaaacatgctcgaaattaccctaaa
ttgcaattatttttcaacctaaagccatttttgtgctagattttctttta
atttacttggttaacagctgttgagaacattttgatgataattagggaaa
gcataatttcaaagttgggtctgagaaaaatttcaaattttttttgtcca
tttataacaaaaatattttttttaacaaagaattttttcacaaaaaacat
cattttttgtgaaaaatttttaaagttctttctccttttacaattgatga
aCTTTCAAAttgtgttaaacttttttcaaataataaatcttTAGGCGTTG
ATAATATTCCAACTCTGCTTTGGAAAGATCCCGTCTTTATGGAAATGCTT
ctcgatttttgtaaaaaagaattgaaatataagcacttactacaccaaaa
gtgctagttttagtgtttggtaccacccccaaacagcagttactacactg
tgtagtaactgttttcataacttctgaatacagtaccaccacggtagtaa
gtgtcatactgtcttgtagtaactgcgtgcccacCCCCCTgatatggttc
atcataaagaaaattaagttgaccgttcaagctatcaaacgtcgtttggt
ttgATGTTCCCGCGTGTCaatcaagttttgtttgttagtagttgatacat
taatATTTAGGGCTTCATACTGTTtctacataaaagttatctttttaaag
ttctatttcaatgatctgaagttatcaaaaaaagcaaaaaaagataattt
ttcaggccggccgcatgaaagctttttttcttcatccacattccggaaac
actacatttttttattttgcctaaacataattttttttgctgctttttta
tttgatcataCTGCCATAGCTTAACCTGCATTctcttttttcagaaattc
tGTTCCCAAGTATTTATTGGAAAGATACCAAGAGACATGTATGAAGATGA
ATTGGTTCCGCTGTTTGAGCCTTATGGTCAAATCTATGATTTACGTATTA
TGGTTGATCCTTTTAGTGGACTGAACAAAGGTTATGCATTTGTTACATAC
AGTACCAAAGAAGGAGCACAAAGTTCTGTCAAAGCTATGGAGAACCATGA
AGTAAGAGGTGGGAAAAAGCTTGGTGTTTGTCTTTCACAAGCAAATAACA
GACTCTTTGTTGGATCTATTCCTAAGACAAAAACCAAACAAGATATCATG
GAAGAATTTAAGACCAAAGTTGAGGAGTTGACAGATGTTATTATGTACTT
TTCTGCAgaggataaaaataaaaacagaggTTTTGCTTTCCTTGACTTTG
CCACACACAAAGATGCTGCTCAGGCAagacgaaaattgcaaagtgggCGT
ATCAAGGTTTTTGGACACATTACTCCAGCTGTTGATTGGGCTGATTCCAT
GGATGAACCAAATGATGAAGTCATGTCTAAGGTAAGAGATTAGATCATTT
TTAGTAATTATCTCCATTTGGTGTTGCAGCCTCATTGAATTATTCAATTT
GATAGCTTTCCTTGCTTTAACTTGGTTGTAATCAGGCTAATTATTGTATA
ATGTATAAATAAGGCTGGCTTTTGATAGCTCAAGGTGTAAAATGACAGCG
AACCACTCAAATTTCTTCCCCATTATACTCCTAATCATCATTTGAATTGC
TTCCATTTTCCATTTTTGTCACAAAGAACACAATTACAATACAAGTGCTT
TATTTATGCCctgaagttaaaaaaattaatatttaggGTTTACACCGCCA
AAGTCAgcaatattttattaaaaaatcccAAACTTATTGATGTGAATAAC
CAAGAATATTGaagttttgcggaatttaattttgcgatttAAAGGGCCAA
ATTTGCATTAATTAATTCTGCATTAGTTAATTTTGCATTTATTTGTTCCC
TCAAGGCAATACTGATCTGCTATTTTAGTAGTATAGTTCAGTTTATACAT
AGTTTGCGCCCCCTTTTTTTAATGGGGCGGGATGCTAGATTTTTGGGGGG
CCTTTGAAGGGGTTACCAAAATGTGCCTAAATTTTTTGGGtgggaatgta
ggggggggtcaaaaaagaaaaggggGTTTGGAAAATCTGGTCAACTCAAT
AATTTACATATAGTCGAAGTCcgttttaaagtaaaattatGTACCACCAA
AATACAAAAGTGTATAATGttaatcaaaatattatttatatGTAATGGTT
ATCGACAAAAAgagaacgagaaaaatataACCAATATTGTACGAGTGAAA
GTctttgtgttttgtttataCTTCCTGTATTTTGGTGAAATTAACATCAA
AACATGCGAAATTGATTAGAATTTTCATTAAACAGTACAAAACACTCTTA
ATTGACCTGACttgacaatttttttgtgatttgagAGGAAAACGAAAACA
TTTCTGGGAATAAATTTTGGTAAAAGATACGACAAGAAAGTTCAAATTAT
GACCTCTCActtaccagaccccttttttgAAAACGCtgtcttgtatttgt
acggtacaatatgaaGTACAGGATTTATGTAAGCATTttaagccaatcag
attgcttatatttttcatgttgatgataaATAATGTTATATCTTGAAATT
GTTGCATTTTGGACTCTTTGAtcattttttttggggggggggggcaagat
tgcattacaaaagggggatgaaataaacctagggggttcatacccctctg
caaactctGTTATAgcaatcatttttcatttctttttaggTGAAAGTTGT
CTATGTCAGACATTTATCTCCAGCCATCGACGAAAACAAATTGAATGAAC
TTTTCGAACAATATGGTCCTGTTGAGAAAGTGAAAAAGATTAAGGATTAT
GCTTTCATTAACTTTGCTAACAGGGATGATGCAATGAGAGCTATTGAGGA
ACTTGATAACCAAGAATTGGACGATTTAAAAATTTCAGTACAACTTGCTA
AACCTCAAGTAGATAAAACAGGTCAACGACGTGGGCAATCTGGGTTTGGT
GCTCTTAACAAAAAGGGTGAGTCTGACAATTTTGTCCCCAGAGGAAGAGG
TGGTTTTTCTGGTCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAAGAGGAG
GATTTGGAGGTGGTTTCTCACATGGAGGGAACTACTCTCAAGGTGGATAT
AGAGGTTATGGAGATGACTCTTATGATGACTACTATGCACCACCAGCCAG
ACCTCGTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGCAATGA
GAGGGGGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCCGTGGT
GCTTCCAGAGGTGGATCATCTAGAGGTGGTACTTATGGACAGCAAAGAGG
AGGAATGAACAGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGACTATG
GATCAGGCAGAGGTGGATCAAGAGGAGGTACTGGTGGTTATGGCTCAAGA
GGACGTGGTGCTGGGGCACCAAAAAGGAAAGCAGATTATGGTGGTGATTA
TGGCACCCCCTCTAAACGTAAGAATGAGTGGAACTCCCAACCCATTGCCC
AACAACCCCTTGGTAACTCATCCAGCAACTATTACAATGATGACTACAGT
GGCGGTGACTGGTACACAGATTTATCTGAGCCCAGATGGCAATAAAAATC
TTTTctcaaaaacacaagaaaaaggcATACACCAAATATTTGGatttaaa
actctaaaacaagGCATTGctttaaaactgaaaaaccAATGAagcattga
tttttttcaagGATAACAACGATCACTAAATTAACCTCACGAAGAGTCAA
AACGATTCAAATCTGTACAATTGTAAATTTactgaaagatttttaaaagc
TTTCTATGATTTGAGAGGAAACTGAGAGATTAAAACAAGGACACAAAAGC
TCATAAGTTCATACTTGTACAGCCAAAATTTgctgttttattttataaaa
aaatgtaaaaactggATGGTGCTTATGTGGTGTTGTCgaaatgtaaaaat
atttctttgcatCATTTTACAGGTTTCGCTAACAAAGAAcatatattttt
agtttttaataaACAAAACTTTAGTTCATTCTCTTTCTTAAATAAAGTGT
TGATTTAtgaaaacctttctttttggGGTttgtaaaattcaaatttcgaa
tCAAAGTCTTTGTCTCTTTTGCTTATTCAAAATAAGCTGACTCCTTTAat
ttaaatgttaaaaaaattctttacagGGATTCAAATATATtccaaatttc
atgtcgaagtgattgttttatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047737-exon-scaffold_136-1491911889:8270..8993 | TCONS_00047737-exon-scaffold_136-1491911889:8270..8993 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1510915933:8270..8993 | TCONS_00047737-exon-scaffold_136-1510915933:8270..8993 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1575043694:8270..8993 | TCONS_00047737-exon-scaffold_136-1575043694:8270..8993 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1491911889:17864..18400 | TCONS_00047737-exon-scaffold_136-1491911889:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1510915933:17864..18400 | TCONS_00047737-exon-scaffold_136-1510915933:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1575043694:17864..18400 | TCONS_00047737-exon-scaffold_136-1575043694:17864..18400 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1491911889:19709..20018 | TCONS_00047737-exon-scaffold_136-1491911889:19709..20018 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1510915933:19709..20018 | TCONS_00047737-exon-scaffold_136-1510915933:19709..20018 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1575043694:19709..20018 | TCONS_00047737-exon-scaffold_136-1575043694:19709..20018 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1491911889:20079..21241 | TCONS_00047737-exon-scaffold_136-1491911889:20079..21241 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1510915933:20079..21241 | TCONS_00047737-exon-scaffold_136-1510915933:20079..21241 | Clytia hemisphaerica | exon |
| TCONS_00047737-exon-scaffold_136-1575043694:20079..21241 | TCONS_00047737-exon-scaffold_136-1575043694:20079..21241 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_136 | supercontig | scaffold_136:8270..21241 + |
Blast
BLAST of TCONS_00047737 vs. Swiss-Prot (Human)
Match: HNRPQ (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2) HSP 1 Score: 436.802 bits (1122), Expect = 7.121e-141 Identity = 224/420 (53.33%), Postives = 298/420 (70.95%), Query Frame = 2
Query: 251 HSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDDRALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLKSEEAATNPSASTSVTPXXXXXTEDGKKGPNEDKVKQLLNRTGYTLDITTGQRKYXXXXXXXXXXXXXXXEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQIYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVCLSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRGFAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSKVKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMRAIEELDNQELDDLKISVQLAKPQVDKTGQRRGQ 1510
HS + LL G+ +A KLDEI+ GL+ +LD+RA+EALKEF E+ AL VL QF SDL+HVQNKSAFLCGVMKTYR + K ++ A D KGP+E K+K LL RTGYTLD+TTGQRKYGGPPP + +++F+GKIPRD++EDELVPLFE G I+DLR+M+DP +GLN+GYAFVT+ TKE AQ +VK NHE+R GK +GVC+S ANNRLFVGSIPK+KTK+ I+EEF E LTDVI+Y +DK KNRGF FL++ HK AAQARR+L SG++KV+G++ V+WAD +++P+ EVM+KVKV++VR+L+ + E L + F Q+G +E+VKK+KDYAFI+F RD A++A+EE++ ++L+ I + AKP K +R+ Q
Sbjct: 23 HSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVA-------------------DSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQ---QPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQ 419
The following BLAST results are available for this feature:
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