TCONS_00047737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047737
Unique NameTCONS_00047737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047737 ID=TCONS_00047737|Name=TCONS_00047737|organism=Clytia hemisphaerica|type=transcript|length=2734bp
GGATGCAGCTTTGAGTTGTGGTCACACTGTACATGGAAAATAATTGTTTA
GACTAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCTGCTACA
CAGTCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAATGAATGA
AAGGGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCTTCTGC
TGTTTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACCATGTCG
CATAGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCCTTCCCT
TGCTGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAGTTGATG
AATTAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAGAGGAC
GCGTTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACATGTACA
AAACAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtgctaaaa
tgaaattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCGACATCT
GTCACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGGACCCAA
TGAAGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTCTTGATA
TTACAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGGGAAGGA
CCTGCACCAGGAACTGGTGAAAAGaaattctGTTCCCAAGTATTTATTGG
AAAGATACCAAGAGACATGTATGAAGATGAATTGGTTCCGCTGTTTGAGC
CTTATGGTCAAATCTATGATTTACGTATTATGGTTGATCCTTTTAGTGGA
CTGAACAAAGGTTATGCATTTGTTACATACAGTACCAAAGAAGGAGCACA
AAGTTCTGTCAAAGCTATGGAGAACCATGAAGTAAGAGGTGGGAAAAAGC
TTGGTGTTTGTCTTTCACAAGCAAATAACAGACTCTTTGTTGGATCTATT
CCTAAGACAAAAACCAAACAAGATATCATGGAAGAATTTAAGACCAAAGT
TGAGGAGTTGACAGATGTTATTATGTACTTTTCTGCAgaggataaaaata
aaaacagaggTTTTGCTTTCCTTGACTTTGCCACACACAAAGATGCTGCT
CAGGCAagacgaaaattgcaaagtgggCGTATCAAGGTTTTTGGACACAT
TACTCCAGCTGTTGATTGGGCTGATTCCATGGATGAACCAAATGATGAAG
TCATGTCTAAGgTGAAAGTTGTCTATGTCAGACATTTATCTCCAGCCATC
GACGAAAACAAATTGAATGAACTTTTCGAACAATATGGTCCTGTTGAGAA
AGTGAAAAAGATTAAGGATTATGCTTTCATTAACTTTGCTAACAGGGATG
ATGCAATGAGAGCTATTGAGGAACTTGATAACCAAGAATTGGACGATTTA
AAAATTTCAGTACAACTTGCTAAACCTCAAGTAGATAAAACAGGTCAACG
ACGTGGGCAATCTGGGTTTGGTGCTCTTAACAAAAAGGGTGAGTCTGACA
ATTTTGTCCCCAGAGGAAGAGGTGGTTTCTCACATGGAGGGAACTACTCT
CAAGGTGGATATAGAGGTTATGGAGATGACTCTTATGATGACTACTATGC
ACCACCAGCCAGACCTCGTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTG
GTGGAGCAATGAGAGGGGGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGT
GGTTTCCGTGGTGCTTCCAGAGGTGGATCATCTAGAGGTGGTACTTATGG
ACAGCAAAGAGGAGGAATGAACAGAGGGCGTGGTGGCTTTGGACGAGGAG
GTTCAGACTATGGATCAGGCAGAGGTGGATCAAGAGGAGGTACTGGTGGT
TATGGCTCAAGAGGACGTGGTGCTGGGGCACCAAAAAGGAAAGCAGATTA
TGGTGGTGATTATGGCACCCCCTCTAAACGTAAGAATGAGTGGAACTCCC
AACCCATTGCCCAACAACCCCTTGGTAACTCATCCAGCAACTATTACAAT
GATGACTACAGTGGCGGTGACTGGTACACAGATTTATCTGAGCCCAGATG
GCAATAAAAATCTTTTctcaaaaacacaagaaaaaggcATACACCAAATA
TTTGGatttaaaactctaaaacaagGCATTGctttaaaactgaaaaaccA
ATGAagcattgatttttttcaagGATAACAACGATCACTAAATTAACCTC
ACGAAGAGTCAAAACGATTCAAATCTGTACAATTGTAAATTTactgaaag
atttttaaaagcTTTCTATGATTTGAGAGGAAACTGAGAGATTAAAACAA
GGACACAAAAGCTCATAAGTTCATACTTGTACAGCCAAAATTTgctgttt
tattttataaaaaaatgtaaaaactggATGGTGCTTATGTGGTGTTGTCg
aaatgtaaaaatatttctttgcatCATTTTACAGGTTTCGCTAACAAAGA
AcatatatttttagtttttaataaACAAAACTTTAGTTCATTCTCTTTCT
TAAATAAAGTGTTGATTTAtgaaaacctttctttttggGGTttgtaaaat
tcaaatttcgaatCAAAGTCTTTGTCTCTTTTGCTTATTCAAAATAAGCT
GACTCCTTTAatttaaatgttaaaaaaattctttacagGGATTCAAATAT
ATtccaaatttcatgtcgaagtgattgttttatc
Run BLAST on NCBI

transcript from alignment at scaffold_136:8270..21241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047737 ID=TCONS_00047737|Name=TCONS_00047737|organism=Clytia hemisphaerica|type=transcript|length=12972bp|location=Sequence derived from alignment at scaffold_136:8270..21241+ (Clytia hemisphaerica)
GGATGCAGCTTTGAGTTGTGGTCACACTGTACATGGAAAATAATTGTTTA GACTAAAGTACTTAATCGTTTCATCTTTGAAACGTGTGACCTCTGCTACA CAGTCGATTTTTCATTGCCCATGCTTTTATCATTTGAAGTTAATGAATGA AAGGGACTCGATCAGCGCTTCCCGCCTCCAACTTTCTTCGACGCTTCTGC TGTTTATTCTGTCAGTGAAACACTCTTTACACATCTTTAAAACCATGTCG CATAGTTCAATGTATGACAATTTGCTTGGACAGGGTGTGAACCCTTCCCT TGCTGCGAAATTGGACGAGATTCATCAACAAGGACTCTTACAAGTTGATG AATTAGATGACCGAGCACTTGAAGCTTTGAAGGAATTCACAGAAGAGGAC GCGTTAAACGTACTGGGACAGTTTATGAAGAGTGATTTAACACATGTACA AAACAAGAGTGCTTTCTTATGTGGTGTCATGAAAACATACCGtgctaaaa tgaaattgaaaagtgaGGAAGCAGCTACAAACCCATCAGCATCGACATCT GTCACACCACAACAGCAGCAACAAACAGAAGATGGAAAGAAAGGACCCAA TGAAGACAAAGTAAAACAACTCCTTAATAGAACTGGCTATACTCTTGATA TTACAACTGGACAGAGAAAGTATGGTGGTCCACCACCAGGATGGGAAGGA CCTGCACCAGGAACTGGTGAAAAGGTAATCCCTTGTTGTCTCTTTCCtga cttttttgtttatttaattttcgagtagtttgagtaaagaagaCAAGTTA TATAAATTTCATGCTCAAAGTCTAAGTTTCAACAGGATTACAATGGGCTA TTACAAATTGGTTGAaacaatctaaccttactccagacccgatcaatcga acttgtcgaaccaatcgcaCAATCGAACTCCATCAAACGAATAAATTtca atacaccttatcggaaattccacctcctcgcgttgttgctacgcaacact ttttgggaggtaaacaaagctCGATACTGcgattttcaagcaaaaagcct tacaaaacacccaaaatattgatgccaaaagagcctccaaatcaactgaa gaaccaccgaagttcttgtttttctctttcttataGCTTCTGCtatagca tcttgaaagctgtgttttgtttgtttttttcaaattcagtgtatttttag gaacataTAAACAAGCCAGATATAAGCAAATGAGTTCTTGTTTTACGCGG GAACTTTTAGCGCTACTTGCACTGCCATTGGTCccatttatgtttacctc ccaatttcAACGGATCCATCTTAGCGCGattgtttttgtggaatttccga tagGCCGAGGGAATTGACATACCAGATTAGCGTCCGCCCGCGTGTGTTTG GTGTAGCCGcgtaaaaatttcattattttaagaaaatttcattatttcac aGACAAACCTGAAAATTGAACTCCATCTCCTACAGCTATCATCATTGTCA CCTAAAGTGCGAAAAATAACAATTTCCTGCGCGTGCGTCATAGCCTCTGT TCGATCGGGACTTTAGTCCCCGTATACATCACACTACAAAAAATTAAACC CGCTCTACactaaaagttttctttcaaatcgaACGATCGCGTAAGTCTTT AATTTTACCGCCGCGGCCTCTGGAATCGATTCTTTTTCCGGTCACGGATA CTTCAATTTCTGTAACTGCACATGCGCAATACATACCCGAGAAGATGTTT TCAAAAGGTTGATCGTCTGTGGTGTGGTGGTGTTTGTACAGTGTGGATTT GTTGCTGTAGAGCCTGTAAtggaaaaataatgaataatgaaaaatgaaaa tatgccGCATCTAGTTTCAGGCATGCTGGTGACGCTAAACTGGTATGTTA ATTCCCTCGGCCTATAGAGGACAAagtcaacatttttcaaagaaaatcat tAGATTGGAAAATATTACTTTTTACGGTCTTGCTTTTCAACTGTTTCTCC TAAGTCTaataaaaatgtcataaaaagaATTTTGCCCTAACTNAggtgta tttaaaaaatttattgaacctaatcgaacactcacaatttttgaagcaat caatagcagttcgattagtttgtcAGTAAAAACTTTGATTAGTTCCAGGA TATtaggctattccatttttaaaccatacacgttttttttttttataagg aaccttaactttgctctgagcctggagttccttatttttacagagaattt cagcctcaaagaacttatcgagttccttatttacatagctgctaagtttg gattcgcaaaaTATTTAACTTCTTTATAATAGTATAACTtcttctcagcc tgagcagttccttaacaattccttattttttggaccattttcagcctcgg gttccttataaacgtgttccttatataaaaaaaaacgtgtatatacaggg gtattgacaaacGTTTCCAGGAggtctgagccttgattttccaaggggtt tttggtcattttcagattttccaagggggttattaaaGGTTCCAGgtttt tccagggggttctcCCCTCCTACCCTCCTAaacctttttcacaaaatttc actttctaGGGGTGTTNTAAAGGTTCCAGGTGTTTCCAGGGGGTTCTCCC CTCCTAaacctttttcacaaaatttcactttctaGGGGTGTTGACTCCta taatttccaggggatagtttgttatcaaagatttccaggggggttagtga aaaaagttcgtcaatacttctgtacaatttttttttggaatagcccatta aATCCTCATaatatcttccctcgcttgcaaaaacttaaTCCTGGCATGCT ATTTcaacagttcccggacttaaccTCCCGGTcctcgacaaaaaactttc aaattttttatcggcattaggccaataagggggtggggggtccaactaca taccgataaaaaaacaaatattgggacaaaaatcttttcagccaatttct ttctgatttcgtccacaaactccactgaaagcatacaatttcacttgctt tcaccttcGCGCACAAATTAAcaactttaaaagtacagttttgaattagc tatgataaaaaaacccttttttcattggccagtGTGCTgccatttttttc gaaatgttGTGATTTCATCGCgtctttttaactttcgttttgattaacaa tatcaatgcgggtatgaacaaactcaatgttggtgcaaATACATAGACTA AAATTCAATGATGACGGGTGGAAAGGCAAGAATAATGCAATGGTGGacgt gattttggaaaaaattgtgttttccaagatgtaaaagttggtttcgaaaa attttggccgataagagcaagggggagggggtctcaAGCTTATcagccca atgccgataaaaaattcgaaagatgTTTGTCAAAGACCCCTTACAGTCAA TACCTTTAGCCAAATTAAAAAAGTCCTGATTAGGAATATGAAGCAAATAC CTAGTGTTAAATAAGTATTTTCCAACCTAGTGATTGCCGATCCTTGCTTG ACCGGATGCAATATAAACCAATATAATAAGTCTTCACCAACAAAAATGAA CACAATCCAATTTGAACCAACACAAGAATCAATTTGAACGATGATCAATa tcaattgatccaaataccaTTTACAGAATACACATAAAGCCCCTCTGGCT ATCATATATTATTGTTTATCACTTTGTATTATTCATCTATAATATAAGGT AGAGATTAACATctagattttctccaaaaatagaaaaaatcgcaTGTTAA AAAGCACTTCATAAGATTTAGGTGGGAAAGAAAGATTGAGCTCTTGACTT GCTCGGGGGACCAAGCTACAATTCCACCATCCgcgaatgaaatttttcaa ttttttgcacagttatCATATTTGGTATACTGAATCTTTTGGTCATACTT GGAATTTGCAAATGTAGCTCGTTTCAGAGTTAttaaatttttagatattt cttcctaattaggaataggATTTCTAATTAGTAATCCtggtaaaagtaag aaaaatgttcctaatttggctaaaggtaTTGAccgggggggggtcaacat ttataataccaacccatagcccaaaaacctgacttttgagCTAAGacaac accaccaccccaaaattagtctacacaatagacagatccaggattttagg ccttactcttggtctataggcactgctataggtggccactagtgaccccc accgggaattgtttattaataggtttaaagataatagacaacattcacaa aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT TCCCATTTTTGTAACTTGTCAAGGTCGTTTTGGAGAATAGTGGTGTCGTT TAGGCTACGAATGATACGGTGTAGGAGTGAGTCGTCAGCAAATAAAGCAA ATGTGGATTCGGTTGTGAGTGGCAAATCGTTAATATATATGAGAAAGAGT AATGGGCCCAATACAGATCCCTGTGGTACTCCTGATTCAACTTTTGATTG TGGGGACGTAGATCCTCGGACAACAACACATTGGGTTCTGTTGGATAGAA AGTCAGTGATCCACGATAATATCTCATTTCGAATGCCGTAGTGATGTAAT TTGATGAGTAGCTTTCTGCGGTTAACTTTATCGAAAGCCTTGCTAAAGTC TAGAAGGACTGAGTCAATCTGTTCACTGTTGTTAAGGGCTTTTGCAAATT TATCAACTGTTGCTAGTAATTGTGTTTCGCATGAGCGTTGTTTGCGAAAA CCGTGTTGAGCATCACTAAGTGTACCGTCTTTCTCGAGATGGGTCATGAT NGAAACACTGCAATAATGTTGATTGAGAAGTTGGGCGATTTCACCATCAT CTGAGTGGGTTTGTCCATTTTTGTCAATGAGTGGCGCAACTCCGGCAATA TCATTTCGCTTAGATTtgatatatttaaaaagtttctttttatttcctgT TACTGTCTCTTTAACGAAATTGTTTTTTGTGGTGTTACAGATCTTTCTAT AGTGTTTTGCTAAGGTCAAGTATTGCTTTCTTGCGTGTTGTAAAATTGAC CATTTGAAGACCTGAAGTTTCAAAGACTTCAAGGTATTGTTCGTTTAGTT CTTTCGAATACTGATTGGAAGTGATACTGTTGGTGTTCCAatctataggc ggccactagtgacccccaccgggaattgtttattaataggtttaaagata atagacaacattcacaaaagatgtttatcaatagagattttaaataaaag aatgtttaaaacacagctgattggcttaggtttcgaaactctattgtttc attaaaacctcagtgcgcatgcgatttatctggaaaatttcaatattcaa aacaagagcagtgctcatagcccgaagagtaggagttttacgctcaaaac gaaggaagatatgacataGCCTACCCCAAAATTggtcgataccaacttga aaatcataattttcagggAAAgggttggtatcgataccaacatgactttt tggatttgacaaaatatcatgggacccaccccctaatttaccaataccaa tctgacaaatttaaGCTTAAAGCTGTTTAgaggggacccaccccctccca cacaaacagcCCTTGTAAtaagagaattttcaaaaaactcatttttgtaa tactctttcttcaacacaacacagaaaatgtcatatgctaaaataaaaaa tgactgaaaactgacaatataataaaaacaaacccaatgaagctagcaaa atcaatctgaatcaatattatctgaatataattgattATTTTTCTTGCTA AAAAGAAGAAGTATTGAATTTTCGCTCAAAGACCTCACAGATTCCAGACA GTTTATTAGTTTAAATTATGGACTTGCACATTTTGCAAACCAAATTAGCT TAAAATGGCTTGTTTATTCGATTTGAatactttcgaatgttttaaaattt cgaatattttttcgaaaattcgaatGTCTTTTgcccatttgaaattcgaa ttttcacaaaaagaaaaataaggttTCTTTACTCTGGTTTGTTTGATACT TACACTACATCCTGCTTGATCAAGTTTGCTTTGGTGTTAGAGTTTTACCT TAATACAAAAACGACCAAGATAATAAAGAAATGCAGACTGTTTAATTTTT TCAGGGTATtagctataagggcaaaaattaggaaagttttgctgtcattt tgatatggatatcaactttctgaatcatcttatttaaaaaaaggggtacc caccccctattttggtatcaatacaaACCAtgaggataactctttttttt ctaaaaaaagggggacccacccccatcaataccaacttgacttttcagac ttttaaaggaaaaaatgacaccaccacccggctatggctggtatctggat gttgacccccctGTATTGACATTTGTTGTAttcggatatttgtctatcca gAATAAAGTGTTTCGATTTCGCGCGCCGAGtagtggcggaatactacgcc ccaacaaaccaCCTCTGGCGCTAAAGGAtgcaggaaaagtgtgtaacccg ttatcggaagtaatttcccaaTTTACGTTatgaatttggctttgaaaaga ggCTAATATTGGTTTAtcaaactgatcgaaccgatcaaacttaatcgaac actcacaatctttaaaaaatcttagagctcgattaaattttttaatcaaa ctttaatcattCAATGGagttcaattagtttgattgtttccacaagttcg attgatcaggTCTGGCTCACTCGAACacatcgaatattacccaggaatcg gcctttcgattgagattcaattgactatcgacaatcgaattgcaattatt cgattgcgttcaattgattggCGTTtaattgacaccgtctggcccTCTGg cagtctaagcttaaactcctatatcaggaatagaaactaggctagtctta cctctttcaGTCAcagaaatccttgcatttgcatgGGGTGTGCCTTTGCA ACGgtttcaacaattttttccaacccctgCAAGTGAGCTAGAACGTGTAA GGCAAAATGCACGAAAATTATCAAATCtcaactttaaaatgaaaatgaca taAAACGAAGACGaatggcattttcattttttttctttagaagattcttt agcctttttagaaaatttttgtctacaggttaaaatttttatctgtgcat ttttttataatcaagtgaaacatttttccactcTGTGTAAATGGAACGGG TTGCAGTGATCGAGTGTAATTGCACGGGGTTTTTTCGTCACTTTGGTTTT CAACCCATTGCATTTGCCGCATGTCGAACCCTGTAGTTTTTCTAGAAACC GACCAGGTGAAAGATAATAATTTTTTGACCCgaccgcagactatgggtta aTCTATATggtcaggggggggggcacgcagttactctacaagacatgatg tgtagtaagtgctttttcaacactttttttcaggaccaccaccctttgca gttactacaccttggtagtaactgttttcagaaaagatttccaggtacca cccctgtttttgagtgatatcatcaaaaacatgctcgaaattaccctaaa ttgcaattatttttcaacctaaagccatttttgtgctagattttctttta atttacttggttaacagctgttgagaacattttgatgataattagggaaa gcataatttcaaagttgggtctgagaaaaatttcaaattttttttgtcca tttataacaaaaatattttttttaacaaagaattttttcacaaaaaacat cattttttgtgaaaaatttttaaagttctttctccttttacaattgatga aCTTTCAAAttgtgttaaacttttttcaaataataaatcttTAGGCGTTG ATAATATTCCAACTCTGCTTTGGAAAGATCCCGTCTTTATGGAAATGCTT ctcgatttttgtaaaaaagaattgaaatataagcacttactacaccaaaa gtgctagttttagtgtttggtaccacccccaaacagcagttactacactg tgtagtaactgttttcataacttctgaatacagtaccaccacggtagtaa gtgtcatactgtcttgtagtaactgcgtgcccacCCCCCTgatatggttc atcataaagaaaattaagttgaccgttcaagctatcaaacgtcgtttggt ttgATGTTCCCGCGTGTCaatcaagttttgtttgttagtagttgatacat taatATTTAGGGCTTCATACTGTTtctacataaaagttatctttttaaag ttctatttcaatgatctgaagttatcaaaaaaagcaaaaaaagataattt ttcaggccggccgcatgaaagctttttttcttcatccacattccggaaac actacatttttttattttgcctaaacataattttttttgctgctttttta tttgatcataCTGCCATAGCTTAACCTGCATTctcttttttcagaaattc tGTTCCCAAGTATTTATTGGAAAGATACCAAGAGACATGTATGAAGATGA ATTGGTTCCGCTGTTTGAGCCTTATGGTCAAATCTATGATTTACGTATTA TGGTTGATCCTTTTAGTGGACTGAACAAAGGTTATGCATTTGTTACATAC AGTACCAAAGAAGGAGCACAAAGTTCTGTCAAAGCTATGGAGAACCATGA AGTAAGAGGTGGGAAAAAGCTTGGTGTTTGTCTTTCACAAGCAAATAACA GACTCTTTGTTGGATCTATTCCTAAGACAAAAACCAAACAAGATATCATG GAAGAATTTAAGACCAAAGTTGAGGAGTTGACAGATGTTATTATGTACTT TTCTGCAgaggataaaaataaaaacagaggTTTTGCTTTCCTTGACTTTG CCACACACAAAGATGCTGCTCAGGCAagacgaaaattgcaaagtgggCGT ATCAAGGTTTTTGGACACATTACTCCAGCTGTTGATTGGGCTGATTCCAT GGATGAACCAAATGATGAAGTCATGTCTAAGGTAAGAGATTAGATCATTT TTAGTAATTATCTCCATTTGGTGTTGCAGCCTCATTGAATTATTCAATTT GATAGCTTTCCTTGCTTTAACTTGGTTGTAATCAGGCTAATTATTGTATA ATGTATAAATAAGGCTGGCTTTTGATAGCTCAAGGTGTAAAATGACAGCG AACCACTCAAATTTCTTCCCCATTATACTCCTAATCATCATTTGAATTGC TTCCATTTTCCATTTTTGTCACAAAGAACACAATTACAATACAAGTGCTT TATTTATGCCctgaagttaaaaaaattaatatttaggGTTTACACCGCCA AAGTCAgcaatattttattaaaaaatcccAAACTTATTGATGTGAATAAC CAAGAATATTGaagttttgcggaatttaattttgcgatttAAAGGGCCAA ATTTGCATTAATTAATTCTGCATTAGTTAATTTTGCATTTATTTGTTCCC TCAAGGCAATACTGATCTGCTATTTTAGTAGTATAGTTCAGTTTATACAT AGTTTGCGCCCCCTTTTTTTAATGGGGCGGGATGCTAGATTTTTGGGGGG CCTTTGAAGGGGTTACCAAAATGTGCCTAAATTTTTTGGGtgggaatgta ggggggggtcaaaaaagaaaaggggGTTTGGAAAATCTGGTCAACTCAAT AATTTACATATAGTCGAAGTCcgttttaaagtaaaattatGTACCACCAA AATACAAAAGTGTATAATGttaatcaaaatattatttatatGTAATGGTT ATCGACAAAAAgagaacgagaaaaatataACCAATATTGTACGAGTGAAA GTctttgtgttttgtttataCTTCCTGTATTTTGGTGAAATTAACATCAA AACATGCGAAATTGATTAGAATTTTCATTAAACAGTACAAAACACTCTTA ATTGACCTGACttgacaatttttttgtgatttgagAGGAAAACGAAAACA TTTCTGGGAATAAATTTTGGTAAAAGATACGACAAGAAAGTTCAAATTAT GACCTCTCActtaccagaccccttttttgAAAACGCtgtcttgtatttgt acggtacaatatgaaGTACAGGATTTATGTAAGCATTttaagccaatcag attgcttatatttttcatgttgatgataaATAATGTTATATCTTGAAATT GTTGCATTTTGGACTCTTTGAtcattttttttggggggggggggcaagat tgcattacaaaagggggatgaaataaacctagggggttcatacccctctg caaactctGTTATAgcaatcatttttcatttctttttaggTGAAAGTTGT CTATGTCAGACATTTATCTCCAGCCATCGACGAAAACAAATTGAATGAAC TTTTCGAACAATATGGTCCTGTTGAGAAAGTGAAAAAGATTAAGGATTAT GCTTTCATTAACTTTGCTAACAGGGATGATGCAATGAGAGCTATTGAGGA ACTTGATAACCAAGAATTGGACGATTTAAAAATTTCAGTACAACTTGCTA AACCTCAAGTAGATAAAACAGGTCAACGACGTGGGCAATCTGGGTTTGGT GCTCTTAACAAAAAGGGTGAGTCTGACAATTTTGTCCCCAGAGGAAGAGG TGGTTTTTCTGGTCGTGGAGCTGGTGGCCCAAGAGGGCGTGGAAGAGGAG GATTTGGAGGTGGTTTCTCACATGGAGGGAACTACTCTCAAGGTGGATAT AGAGGTTATGGAGATGACTCTTATGATGACTACTATGCACCACCAGCCAG ACCTCGTGGTGGTCCACCAAGCCGTGGCCCAAGTCGTGGTGGAGCAATGA GAGGGGGAAGAGGTAGTCCTCGAGGAGGTTCAACTGGTGGTTTCCGTGGT GCTTCCAGAGGTGGATCATCTAGAGGTGGTACTTATGGACAGCAAAGAGG AGGAATGAACAGAGGGCGTGGTGGCTTTGGACGAGGAGGTTCAGACTATG GATCAGGCAGAGGTGGATCAAGAGGAGGTACTGGTGGTTATGGCTCAAGA GGACGTGGTGCTGGGGCACCAAAAAGGAAAGCAGATTATGGTGGTGATTA TGGCACCCCCTCTAAACGTAAGAATGAGTGGAACTCCCAACCCATTGCCC AACAACCCCTTGGTAACTCATCCAGCAACTATTACAATGATGACTACAGT GGCGGTGACTGGTACACAGATTTATCTGAGCCCAGATGGCAATAAAAATC TTTTctcaaaaacacaagaaaaaggcATACACCAAATATTTGGatttaaa actctaaaacaagGCATTGctttaaaactgaaaaaccAATGAagcattga tttttttcaagGATAACAACGATCACTAAATTAACCTCACGAAGAGTCAA AACGATTCAAATCTGTACAATTGTAAATTTactgaaagatttttaaaagc TTTCTATGATTTGAGAGGAAACTGAGAGATTAAAACAAGGACACAAAAGC TCATAAGTTCATACTTGTACAGCCAAAATTTgctgttttattttataaaa aaatgtaaaaactggATGGTGCTTATGTGGTGTTGTCgaaatgtaaaaat atttctttgcatCATTTTACAGGTTTCGCTAACAAAGAAcatatattttt agtttttaataaACAAAACTTTAGTTCATTCTCTTTCTTAAATAAAGTGT TGATTTAtgaaaacctttctttttggGGTttgtaaaattcaaatttcgaa tCAAAGTCTTTGTCTCTTTTGCTTATTCAAAATAAGCTGACTCCTTTAat ttaaatgttaaaaaaattctttacagGGATTCAAATATATtccaaatttc atgtcgaagtgattgttttatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030403XLOC_030403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047737-exon-scaffold_136-1491911889:8270..8993TCONS_00047737-exon-scaffold_136-1491911889:8270..8993Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1510915933:8270..8993TCONS_00047737-exon-scaffold_136-1510915933:8270..8993Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1575043694:8270..8993TCONS_00047737-exon-scaffold_136-1575043694:8270..8993Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1491911889:17864..18400TCONS_00047737-exon-scaffold_136-1491911889:17864..18400Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1510915933:17864..18400TCONS_00047737-exon-scaffold_136-1510915933:17864..18400Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1575043694:17864..18400TCONS_00047737-exon-scaffold_136-1575043694:17864..18400Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1491911889:19709..20018TCONS_00047737-exon-scaffold_136-1491911889:19709..20018Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1510915933:19709..20018TCONS_00047737-exon-scaffold_136-1510915933:19709..20018Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1575043694:19709..20018TCONS_00047737-exon-scaffold_136-1575043694:19709..20018Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1491911889:20079..21241TCONS_00047737-exon-scaffold_136-1491911889:20079..21241Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1510915933:20079..21241TCONS_00047737-exon-scaffold_136-1510915933:20079..21241Clytia hemisphaericaexon
TCONS_00047737-exon-scaffold_136-1575043694:20079..21241TCONS_00047737-exon-scaffold_136-1575043694:20079..21241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:8270..21241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86943 0.98257 3.26334 6.39053 13.6824 14.809 3.81999 3.51367 0.692747 0.450953 0 0.711353 0.550194 0.138008 0.795736 1.14652 0.839135 0.914145 1.09167 0 0.842239 0.824646 1.5668 1.8241 5.28724 6.05955 0.795309 0 0.706665 2.21922
Blast
BLAST of TCONS_00047737 vs. Swiss-Prot (Human)
Match: HNRPQ (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 436.802 bits (1122), Expect = 7.121e-141
Identity = 224/420 (53.33%), Postives = 298/420 (70.95%), Query Frame = 2
Query:  251 HSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDDRALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLKSEEAATNPSASTSVTPXXXXXTEDGKKGPNEDKVKQLLNRTGYTLDITTGQRKYXXXXXXXXXXXXXXXEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQIYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVCLSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRGFAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSKVKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMRAIEELDNQELDDLKISVQLAKPQVDKTGQRRGQ 1510
            HS  +  LL  G+   +A KLDEI+  GL+   +LD+RA+EALKEF E+ AL VL QF  SDL+HVQNKSAFLCGVMKTYR + K  ++ A                   D  KGP+E K+K LL RTGYTLD+TTGQRKYGGPPP          +    +++F+GKIPRD++EDELVPLFE  G I+DLR+M+DP +GLN+GYAFVT+ TKE AQ +VK   NHE+R GK +GVC+S ANNRLFVGSIPK+KTK+ I+EEF    E LTDVI+Y   +DK KNRGF FL++  HK AAQARR+L SG++KV+G++   V+WAD +++P+ EVM+KVKV++VR+L+  + E  L + F Q+G +E+VKK+KDYAFI+F  RD A++A+EE++ ++L+   I +  AKP   K  +R+ Q
Sbjct:   23 HSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVA-------------------DSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQ---QPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQ 419          
The following BLAST results are available for this feature:
BLAST of TCONS_00047737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRPQ7.121e-14153.33Heterogeneous nuclear ribonucleoprotein Q OS=Homo ... [more]
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