|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047726 ID=TCONS_00047726|Name=TCONS_00047726|organism=Clytia hemisphaerica|type=transcript|length=3253bpRun BLAST on NCBI protein sequence of TCONS_00047726-protein >TCONS_00047726-protein ID=TCONS_00047726-protein|Name=TCONS_00047726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp MENLKRYKRLLILVLTPILLSPMVIAIDEPEMRCAYGIAIMAVFWVTEVTRun BLAST on NCBI transcript from alignment at scaffold_135:80984..100591+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047726 ID=TCONS_00047726|Name=TCONS_00047726|organism=Clytia hemisphaerica|type=transcript|length=19608bp|location=Sequence derived from alignment at scaffold_135:80984..100591+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_135:80984..100591+ >TCONS_00047726 ID=TCONS_00047726|Name=TCONS_00047726|organism=Clytia hemisphaerica|type=CDS|length=24843bp|location=Sequence derived from alignment at scaffold_135:80984..100591+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047726 vs. Swiss-Prot (Human)
Match: S13A5 (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1) HSP 1 Score: 409.068 bits (1050), Expect = 2.550e-129 Identity = 267/591 (45.18%), Postives = 368/591 (62.27%), Query Frame = 2
Query: 314 MRCAYGIAIMAVFWVTEVTPLAVTSXXXXXXXXXXXXXXAKVVCMQYMKDTNXXXXXXXXXXXXXERWNVHKRVALLVLLMVGTQPRRLMLGFMVTTAFISMWITNTATTAMMTPIMEAVLKQLXXXXXXXXXXXXXXXXXXXXXXXXXXSNGNATQQLIPTYHTKPHQKKYVIDNGNSIQHEEETMRYNVKEGTVSNSDTMTKLVINSKDNEEYERHRQLCKAMLLCICYSANIGGTGTLTGTAPQLVLAGQVDDVFPKAPS-VSFIFWFVYAFPQMLIFLLIAWIYLQAMFLGIGLRHFSFLKRMCGKGAPKSDKGKEMYDVMKKQYDDLGPVSYAEITVLINFLMLVLLWFFREPKFMPGW-------GELFKAKYISDGTAAIIIGFLLFQLPSQTPEIFAKGR--PKKKLP--SKTILEWKYVSEKFPWNVXXXXXXXXXXXXXCKEXXXXXXXXXXXXXXXXIPESALVFIICTMLTFLTEITSNTATATILLPILASLGQSIGVNPLYMMVPATVCASFAFMLPVATPPNAIVFGTGRLTVADMAKAGFGMNIIGILLVTLSINTWGYEYYDLGTFPEWARASE 2050
+RCAY I +MA++W TEV PLAVTSL+P+++FP +L ++ VC+QYMKDTN+L LGGL++A+A+ERWN+HKR+AL LL VG +P RLMLGFM TA +SMWI+NTATTAMM PI+EA+L+Q++ + A +L+ K VI G ++ +E+ + ++LCKAM LCICY+A+IGGT TLTGT P +VL GQ++++FP + V+F WF +AFP ML+ LL AW++LQ +++ F+F K+ G G K V++++Y LGP+S+AEI VLI F +LV+LWF R+P FMPGW GE KY+SD T AI + LLF +PSQ P+ + + ++K P +L+WK EK PW ++ LLG GFALA + SGLS+++ Q+ L ++P +A+ I+ ++ TE TSN AT T+ LPI AS+ +SIG+NPLY+M+P T+ ASFAFMLPVATPPNAIVF G L VADM K G MNIIG+ V L++NTWG +DL FP+WA +
Sbjct: 36 VRCAYVIILMAIYWCTEVIPLAVTSLMPVLLFPLFQILDSRQVCVQYMKDTNMLFLGGLIVAVAVERWNLHKRIALRTLLWVGAKPARLMLGFMGVTALLSMWISNTATTAMMVPIVEAILQQMEATS----------------------AATEAGLELVDKGKAKELPGSQVIFEGPTLGQQED------------------------------QERKRLCKAMTLCICYAASIGGTATLTGTGPNVVLLGQMNELFPDSKDLVNFASWFAFAFPNMLVMLLFAWLWLQFVYM-----RFNF-KKSWGCGLESKKNEKAALKVLQEEYRKLGPLSFAEINVLICFFLLVILWFSRDPGFMPGWLTVAWVEGE---TKYVSDATVAIFVATLLFIVPSQKPKFNFRSQTEEERKTPFYPPPLLDWKVTQEKVPWGIVLLLGGGFALAKGSEASGLSVWMGKQMEPLHAVPPAAITLILSLLVAVFTECTSNVATTTLFLPIFASMSRSIGLNPLYIMLPCTLSASFAFMLPVATPPNAIVFTYGHLKVADMVKTGVIMNIIGVFCVFLAVNTWGRAIFDLDHFPDWANVTH 565 The following BLAST results are available for this feature:
BLAST of TCONS_00047726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.