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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047722 ID=TCONS_00047722|Name=TCONS_00047722|organism=Clytia hemisphaerica|type=transcript|length=957bp
CTTTCGTCATCGGTGGCTATTATAATATCATCGTGTATGACGTGAACCTC
AGGAAGATTTGAGAACAGAGGCTGAAGAGCTGCATTGAGCTCCCCTTGTG
ACGGCTTTAACCCCATGACTAATCTCTTATACCTATAGAGCTTGCCATTT
AAATGAAAGACTGTAAGATTCCTAgcattttcttctatttctaaTTGCCA
GAACGctgattttaaatcaattttggaAAAGACCTTTTTGCCAGATAACT
GGGCCTTAATATCTTCTGGACGTGGAATGGGGAAGTTTGATGAAAGAAGC
GCCTTATTTAGGTTCTTGGCATCAAGGGTTATGCGAATGTTGCCATCGTC
TTTAGGGGCTATCACTACATTGGAAATCCATGGGGTCTGTTGACCTGCAG
GGAGTTCTTCAATAACATCTTGggttttcatttcatttatgACCTCCTCC
ACACGACTTTTAAGGTGATAAGGAATTCTCCTAGGAGGTTCTGCAACCGC
CTTAATGTTTGGATTGGCAGGAAGCTTGACAAGATAGTTTTTCAACTTAC
CGATTCCATTGAAAATTGGTGTCATCTCAGTAATGATGTCTTGTAGATTT
TTCTTCAGTAAATGATCTGTGAGATGGATCATTCTGACAGGTGTAAGTAC
TTCAGGTTGGTTGTTGAAGCTTACAATATTCAATTGGGTTGCCATCGCAC
CGGAAAGTATGGATTCACATGGCTCTTTTATGATGTACCATTGAACTGGA
ACCGTCCTGTCACCGAATGAAACACTACATCGACTAACTCCAATTGCTGG
TATCGGTTTGCTTTTGTATGGCTTTAGTCTGAGATTTGTTTTACTCATTC
TGTCTAGGATATTCCATTTTTTAGCTGTTTCCATGCTACACACTGAGATT
CCTGCCCCTGTATCGGCTAATACAGTGTCTAGATGGTTGTTAATGAGGAT
ATTTGTT Run BLAST on NCBI protein sequence of TCONS_00047722-protein >TCONS_00047722-protein ID=TCONS_00047722-protein|Name=TCONS_00047722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
TNILINNHLDTVLADTGAGISVCSMETAKKWNILDRMSKTNLRLKPYKSK
PIPAIGVSRCSVSFGDRTVPVQWYIIKEPCESILSGAMATQLNIVSFNNQ
PEVLTPVRMIHLTDHLLKKNLQDIITEMTPIFNGIGKLKNYLVKLPANPN
IKAVAEPPRRIPYHLKSRVEEVINEMKTQDVIEELPAGQQTPWISNVVIA
PKDDGNIRITLDAKNLNKALLSSNFPIPRPEDIKAQLSGKKVFSKIDLKS
AFWQLEIEENARNLTVFHLNGKLYRYKRLVMGLKPSQGELNAALQPLFSN
LPEVHVIHDDIIIATDDE Run BLAST on NCBI transcript from alignment at scaffold_134:143223..144179 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047722 ID=TCONS_00047722|Name=TCONS_00047722|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at scaffold_134:143223..144179 (Clytia hemisphaerica)
AACAAATATCCTCATTAACAACCATCTAGACACTGTATTAGCCGATACAG
GGGCAGGAATCTCAGTGTGTAGCATGGAAACAGCTAAAAAATGGAATATC
CTAGACAGAATGAGTAAAACAAATCTCAGACTAAAGCCATACAAAAGCAA
ACCGATACCAGCAATTGGAGTTAGTCGATGTAGTGTTTCATTCGGTGACA
GGACGGTTCCAGTTCAATGGTACATCATAAAAGAGCCATGTGAATCCATA
CTTTCCGGTGCGATGGCAACCCAATTGAATATTGTAAGCTTCAACAACCA
ACCTGAAGTACTTACACCTGTCAGAATGATCCATCTCACAGATCATTTAC
TGAAGAAAAATCTACAAGACATCATTACTGAGATGACACCAATTTTCAAT
GGAATCGGTAAGTTGAAAAACTATCTTGTCAAGCTTCCTGCCAATCCAAA
CATTAAGGCGGTTGCAGAACCTCCTAGGAGAATTCCTTATCACCTTAAAA
GTCGTGTGGAGGAGGTcataaatgaaatgaaaaccCAAGATGTTATTGAA
GAACTCCCTGCAGGTCAACAGACCCCATGGATTTCCAATGTAGTGATAGC
CCCTAAAGACGATGGCAACATTCGCATAACCCTTGATGCCAAGAACCTAA
ATAAGGCGCTTCTTTCATCAAACTTCCCCATTCCACGTCCAGAAGATATT
AAGGCCCAGTTATCTGGCAAAAAGGTCTTTtccaaaattgatttaaaatc
agCGTTCTGGCAAttagaaatagaagaaaatgcTAGGAATCTTACAGTCT
TTCATTTAAATGGCAAGCTCTATAGGTATAAGAGATTAGTCATGGGGTTA
AAGCCGTCACAAGGGGAGCTCAATGCAGCTCTTCAGCCTCTGTTCTCAAA
TCTTCCTGAGGTTCACGTCATACACGATGATATTATAATAGCCACCGATG
ACGAAAG Coding sequence (CDS) from alignment at scaffold_134:143223..144179 >TCONS_00047722 ID=TCONS_00047722|Name=TCONS_00047722|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_134:143223..144179 (Clytia hemisphaerica)
ACAAATATCCTCATTAACAACCATCTAGACACTGTATTAGCCGATACAGG
GGCAGGAATCTCAGTGTGTAGCATGGAAACAGCTAAAAAATGGAATATCC
TAGACAGAATGAGTAAAACAAATCTCAGACTAAAGCCATACAAAAGCAAA
CCGATACCAGCAATTGGAGTTAGTCGATGTAGTGTTTCATTCGGTGACAG
GACGGTTCCAGTTCAATGGTACATCATAAAAGAGCCATGTGAATCCATAC
TTTCCGGTGCGATGGCAACCCAATTGAATATTGTAAGCTTCAACAACCAA
CCTGAAGTACTTACACCTGTCAGAATGATCCATCTCACAGATCATTTACT
GAAGAAAAATCTACAAGACATCATTACTGAGATGACACCAATTTTCAATG
GAATCGGTAAGTTGAAAAACTATCTTGTCAAGCTTCCTGCCAATCCAAAC
ATTAAGGCGGTTGCAGAACCTCCTAGGAGAATTCCTTATCACCTTAAAAG
TCGTGTGGAGGAGGTcataaatgaaatgaaaaccCAAGATGTTATTGAAG
AACTCCCTGCAGGTCAACAGACCCCATGGATTTCCAATGTAGTGATAGCC
CCTAAAGACGATGGCAACATTCGCATAACCCTTGATGCCAAGAACCTAAA
TAAGGCGCTTCTTTCATCAAACTTCCCCATTCCACGTCCAGAAGATATTA
AGGCCCAGTTATCTGGCAAAAAGGTCTTTtccaaaattgatttaaaatca
gCGTTCTGGCAAttagaaatagaagaaaatgcTAGGAATCTTACAGTCTT
TCATTTAAATGGCAAGCTCTATAGGTATAAGAGATTAGTCATGGGGTTAA
AGCCGTCACAAGGGGAGCTCAATGCAGCTCTTCAGCCTCTGTTCTCAAAT
CTTCCTGAGGTTCACGTCATACACGATGATATTATAATAGCCACCGATGA
CGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047722-exon-scaffold_134-1491911889:143223..144179 | TCONS_00047722-exon-scaffold_134-1491911889:143223..144179 | Clytia hemisphaerica | exon |
| TCONS_00047722-exon-scaffold_134-1510915933:143223..144179 | TCONS_00047722-exon-scaffold_134-1510915933:143223..144179 | Clytia hemisphaerica | exon |
| TCONS_00047722-exon-scaffold_134-1575043694:143223..144179 | TCONS_00047722-exon-scaffold_134-1575043694:143223..144179 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_134 | supercontig | scaffold_134:143223..144179 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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