TCONS_00047721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047721
Unique NameTCONS_00047721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047721 ID=TCONS_00047721|Name=TCONS_00047721|organism=Clytia hemisphaerica|type=transcript|length=2220bp
TGCCAACATTTTTCAGGGTTAATTTTctcctatttttatttttagtcaca
gtaattaatgaaattgagaagaatttaattctttctttttagCAATGTTG
TCCAGAgctgtaaacaaaaaattgctTGTGAAGCATCATCCAGCCATACA
AGctgctttttgtttcaaaagtgAATTGAAAGAACCAAAGAATCATCCGG
TGTATCAAGCAAGATTGAAATCCACAGACGGTTCCTCCCATCAAACATCT
GACTATCTGAAATATGGTCTTGCTGCTGTGGGTTTGGCTATTTCTGGGTC
GCTGTTAAAACTTTATATTGATGGTCAAAACTCTCCTGTTGAGTGTGcaa
aaaaagctcaaaatgtgTTTTCTCGTGATGAAGTATCTaagagaaaaaca
aagcaaGATGGTATTTGGGTCATTTACGATAACAATGTTTATGACATAAC
TGATTTTGTAGAAGGTCACCCAGGAGGTGCTACTAAAATCATGCTTGCTG
CTGGTGATAATTTGGAGCCCTATTGGGATATGTATGCTTTCCACAAAAAA
GGTGAAGTTTTGGAAATGCTCAAAGAGTACTATATTGGAAAGCTGAGGAA
GGAAGATTGGGTTGTTGCAAGGAAAACTGAAGGTCCTTTTGCCAATGATC
CTAAACGCCATCCAGCACTTCTGGCAAACTCAAAGGAACCATTTAATGGT
GAAACTCCAAGTGTGTTAGCCAATGATAATTTAATCACACCGAATGATCT
TTTCTTTGTTCGAAATCATTTGCCAGTTCCTGATTTAAAAGGTGAAGATT
GTCGACTTAAAATTGAAGGCACTTCAAAATGTATCACCTTAGATTTGAAC
GAGCTCAAAAGCAAATTTGAGAAAGTTGAAATCATATCTGCCATTCAATG
CGCTGGAAATCGTCGAAgtgaaatgaataaaataaagaaagtcAAAGGTC
TTAGCTGGTCCCATAATGCAATCAGTAATGCTAAATGGGGTGGTGTGCTA
TTAAGAGATCTACTTTTAGCTGCTGGTATTGATCCCAATGATAAGACCCT
GAAGCATGTCCATTTTGAAGGAGCTGATAAGGATGTTTCAGGAAGTTGTT
ATGGTGCTTCCATACCCATTAACCGAGTTTTCGCGAAACATCTTCCCATT
CTCGTTGCATATGAGATGAATGATGAGCCTTTGCCGAGGGATCATGGATT
CCCTCTCCGTATTGTTGCACCTGGTATTGTTGGTGCCAGAAATGTGAAAT
GGCTCGAACGCATTGCTGTCAGTCCAGATGAATACCAAGGTCATTGGCAG
CAGAATGATTACAAACCTTTCTCTTCAAACGTTGATTGGGATACTGTTGA
TTTCAGTAAGTCTGTTGCCATCCAAGAGTTACCTGTTACATCAGCTATCT
GCTACCCTACTGATGGTGCCGAGGTAGATCAAGCTGAAGAAGAGCTTACA
GTCAAAGGTTATGCCTACAGTGGAGGTGGTCGTGGTATCCTTAGGGTCGA
TGTATCTGTTGATGATGGCAAGTCATGGATCACTGCTGAGTTGAATCGTT
CTGAACAAGATCTTGATAGCACCTACTCATGGACATTATGGGAATGTACT
GTCCTGATTCCAGAAGGTCACAAAGGCAAGATGAATATCATGTGTAGAGC
TGTTGATAGCTCTTGTAACACACAGCCAGACACTGTTGCTCCTGTCTGGA
ATCTTCGGGGATGTTTGAATAATTCTTGGCATAACGTTGAACTGAAAGTC
ACAGATTCTGAATAAGActttattttgcttgtttaTGTCGGTTTTAAAAT
GCATATATATCTGTTTTGTTATAACATAGCGTGgtaatatatttcaaaat
attacttttattcaatttttaagtAATGAAATAATTAGGTCTAATTACAG
TCTTGGTAAAAGACCTCCTTACTGATTGACTAATACAACGGTAATCAAAT
GTCTCTTAGGCCGAGcaatgttcttttaaagttgtagttgcaaattttta
atgatttatttTAATTGAAGCCAATAATTTTGCAGTTCTATCAAAAGTTC
GAGGCCAAAGCCACATAcctttattttcaatttaattctTCTTTAATTAT
AATTAGATATTTTTATACTTTGATTGTAATTtgcctttttattaaatttt
tctttcatcacaggaaattaaaaatagaaaatattaaatttgttttttaa
agaaattctatcaaaactgc
Run BLAST on NCBI

protein sequence of TCONS_00047721-protein

>TCONS_00047721-protein ID=TCONS_00047721-protein|Name=TCONS_00047721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
MLSRAVNKKLLVKHHPAIQAAFCFKSELKEPKNHPVYQARLKSTDGSSHQ
TSDYLKYGLAAVGLAISGSLLKLYIDGQNSPVECAKKAQNVFSRDEVSKR
KTKQDGIWVIYDNNVYDITDFVEGHPGGATKIMLAAGDNLEPYWDMYAFH
KKGEVLEMLKEYYIGKLRKEDWVVARKTEGPFANDPKRHPALLANSKEPF
NGETPSVLANDNLITPNDLFFVRNHLPVPDLKGEDCRLKIEGTSKCITLD
LNELKSKFEKVEIISAIQCAGNRRSEMNKIKKVKGLSWSHNAISNAKWGG
VLLRDLLLAAGIDPNDKTLKHVHFEGADKDVSGSCYGASIPINRVFAKHL
PILVAYEMNDEPLPRDHGFPLRIVAPGIVGARNVKWLERIAVSPDEYQGH
WQQNDYKPFSSNVDWDTVDFSKSVAIQELPVTSAICYPTDGAEVDQAEEE
LTVKGYAYSGGGRGILRVDVSVDDGKSWITAELNRSEQDLDSTYSWTLWE
CTVLIPEGHKGKMNIMCRAVDSSCNTQPDTVAPVWNLRGCLNNSWHNVEL
KVTDSE
Run BLAST on NCBI

transcript from alignment at scaffold_134:137085..139304

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047721 ID=TCONS_00047721|Name=TCONS_00047721|organism=Clytia hemisphaerica|type=transcript|length=2220bp|location=Sequence derived from alignment at scaffold_134:137085..139304 (Clytia hemisphaerica)
gcagttttgatagaatttctttaaaaaacaaatttaatattttctatttt
taatttcctgtgatgaaagaaaaatttaataaaaaggcaAATTACAATCA
AAGTATAAAAATATCTAATTATAATTAAAGAagaattaaattgaaaataa
aggTATGTGGCTTTGGCCTCGAACTTTTGATAGAACTGCAAAATTATTGG
CTTCAATTAaaataaatcattaaaaatttgcaactacaactttaaaagaa
cattgCTCGGCCTAAGAGACATTTGATTACCGTTGTATTAGTCAATCAGT
AAGGAGGTCTTTTACCAAGACTGTAATTAGACCTAATTATTTCATTactt
aaaaattgaataaaagtaatattttgaaatatattacCACGCTATGTTAT
AACAAAACAGATATATATGCATTTTAAAACCGACAtaaacaagcaaaata
aagTCTTATTCAGAATCTGTGACTTTCAGTTCAACGTTATGCCAAGAATT
ATTCAAACATCCCCGAAGATTCCAGACAGGAGCAACAGTGTCTGGCTGTG
TGTTACAAGAGCTATCAACAGCTCTACACATGATATTCATCTTGCCTTTG
TGACCTTCTGGAATCAGGACAGTACATTCCCATAATGTCCATGAGTAGGT
GCTATCAAGATCTTGTTCAGAACGATTCAACTCAGCAGTGATCCATGACT
TGCCATCATCAACAGATACATCGACCCTAAGGATACCACGACCACCTCCA
CTGTAGGCATAACCTTTGACTGTAAGCTCTTCTTCAGCTTGATCTACCTC
GGCACCATCAGTAGGGTAGCAGATAGCTGATGTAACAGGTAACTCTTGGA
TGGCAACAGACTTACTGAAATCAACAGTATCCCAATCAACGTTTGAAGAG
AAAGGTTTGTAATCATTCTGCTGCCAATGACCTTGGTATTCATCTGGACT
GACAGCAATGCGTTCGAGCCATTTCACATTTCTGGCACCAACAATACCAG
GTGCAACAATACGGAGAGGGAATCCATGATCCCTCGGCAAAGGCTCATCA
TTCATCTCATATGCAACGAGAATGGGAAGATGTTTCGCGAAAACTCGGTT
AATGGGTATGGAAGCACCATAACAACTTCCTGAAACATCCTTATCAGCTC
CTTCAAAATGGACATGCTTCAGGGTCTTATCATTGGGATCAATACCAGCA
GCTAAAAGTAGATCTCTTAATAGCACACCACCCCATTTAGCATTACTGAT
TGCATTATGGGACCAGCTAAGACCTTTgactttctttattttattcattt
cacTTCGACGATTTCCAGCGCATTGAATGGCAGATATGATTTCAACTTTC
TCAAATTTGCTTTTGAGCTCGTTCAAATCTAAGGTGATACATTTTGAAGT
GCCTTCAATTTTAAGTCGACAATCTTCACCTTTTAAATCAGGAACTGGCA
AATGATTTCGAACAAAGAAAAGATCATTCGGTGTGATTAAATTATCATTG
GCTAACACACTTGGAGTTTCACCATTAAATGGTTCCTTTGAGTTTGCCAG
AAGTGCTGGATGGCGTTTAGGATCATTGGCAAAAGGACCTTCAGTTTTCC
TTGCAACAACCCAATCTTCCTTCCTCAGCTTTCCAATATAGTACTCTTTG
AGCATTTCCAAAACTTCACCTTTTTTGTGGAAAGCATACATATCCCAATA
GGGCTCCAAATTATCACCAGCAGCAAGCATGATTTTAGTAGCACCTCCTG
GGTGACCTTCTACAAAATCAGTTATGTCATAAACATTGTTATCGTAAATG
ACCCAAATACCATCttgctttgtttttctcttAGATACTTCATCACGAGA
AAAcacattttgagctttttttgCACACTCAACAGGAGAGTTTTGACCAT
CAATATAAAGTTTTAACAGCGACCCAGAAATAGCCAAACCCACAGCAGCA
AGACCATATTTCAGATAGTCAGATGTTTGATGGGAGGAACCGTCTGTGGA
TTTCAATCTTGCTTGATACACCGGATGATTCTTTGGTTCTTTCAATTcac
ttttgaaacaaaaagcagCTTGTATGGCTGGATGATGCTTCACAagcaat
tttttgtttacagcTCTGGACAACATTGctaaaaagaaagaattaaattc
ttctcaatttcattaattactgtgactaaaaataaaaataggagAAAATT
AACCCTGAAAAATGTTGGCA

Coding sequence (CDS) from alignment at scaffold_134:137085..139304

>TCONS_00047721 ID=TCONS_00047721|Name=TCONS_00047721|organism=Clytia hemisphaerica|type=CDS|length=1671bp|location=Sequence derived from alignment at scaffold_134:137085..139304 (Clytia hemisphaerica)
TTATTCAGAATCTGTGACTTTCAGTTCAACGTTATGCCAAGAATTATTCA
AACATCCCCGAAGATTCCAGACAGGAGCAACAGTGTCTGGCTGTGTGTTA
CAAGAGCTATCAACAGCTCTACACATGATATTCATCTTGCCTTTGTGACC
TTCTGGAATCAGGACAGTACATTCCCATAATGTCCATGAGTAGGTGCTAT
CAAGATCTTGTTCAGAACGATTCAACTCAGCAGTGATCCATGACTTGCCA
TCATCAACAGATACATCGACCCTAAGGATACCACGACCACCTCCACTGTA
GGCATAACCTTTGACTGTAAGCTCTTCTTCAGCTTGATCTACCTCGGCAC
CATCAGTAGGGTAGCAGATAGCTGATGTAACAGGTAACTCTTGGATGGCA
ACAGACTTACTGAAATCAACAGTATCCCAATCAACGTTTGAAGAGAAAGG
TTTGTAATCATTCTGCTGCCAATGACCTTGGTATTCATCTGGACTGACAG
CAATGCGTTCGAGCCATTTCACATTTCTGGCACCAACAATACCAGGTGCA
ACAATACGGAGAGGGAATCCATGATCCCTCGGCAAAGGCTCATCATTCAT
CTCATATGCAACGAGAATGGGAAGATGTTTCGCGAAAACTCGGTTAATGG
GTATGGAAGCACCATAACAACTTCCTGAAACATCCTTATCAGCTCCTTCA
AAATGGACATGCTTCAGGGTCTTATCATTGGGATCAATACCAGCAGCTAA
AAGTAGATCTCTTAATAGCACACCACCCCATTTAGCATTACTGATTGCAT
TATGGGACCAGCTAAGACCTTTgactttctttattttattcatttcacTT
CGACGATTTCCAGCGCATTGAATGGCAGATATGATTTCAACTTTCTCAAA
TTTGCTTTTGAGCTCGTTCAAATCTAAGGTGATACATTTTGAAGTGCCTT
CAATTTTAAGTCGACAATCTTCACCTTTTAAATCAGGAACTGGCAAATGA
TTTCGAACAAAGAAAAGATCATTCGGTGTGATTAAATTATCATTGGCTAA
CACACTTGGAGTTTCACCATTAAATGGTTCCTTTGAGTTTGCCAGAAGTG
CTGGATGGCGTTTAGGATCATTGGCAAAAGGACCTTCAGTTTTCCTTGCA
ACAACCCAATCTTCCTTCCTCAGCTTTCCAATATAGTACTCTTTGAGCAT
TTCCAAAACTTCACCTTTTTTGTGGAAAGCATACATATCCCAATAGGGCT
CCAAATTATCACCAGCAGCAAGCATGATTTTAGTAGCACCTCCTGGGTGA
CCTTCTACAAAATCAGTTATGTCATAAACATTGTTATCGTAAATGACCCA
AATACCATCttgctttgtttttctcttAGATACTTCATCACGAGAAAAca
cattttgagctttttttgCACACTCAACAGGAGAGTTTTGACCATCAATA
TAAAGTTTTAACAGCGACCCAGAAATAGCCAAACCCACAGCAGCAAGACC
ATATTTCAGATAGTCAGATGTTTGATGGGAGGAACCGTCTGTGGATTTCA
ATCTTGCTTGATACACCGGATGATTCTTTGGTTCTTTCAATTcacttttg
aaacaaaaagcagCTTGTATGGCTGGATGATGCTTCACAagcaatttttt
gtttacagcTCTGGACAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030389XLOC_030389Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047721-proteinTCONS_00047721-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047721-exon-scaffold_134-1491911889:137085..139304TCONS_00047721-exon-scaffold_134-1491911889:137085..139304Clytia hemisphaericaexon
TCONS_00047721-exon-scaffold_134-1510915933:137085..139304TCONS_00047721-exon-scaffold_134-1510915933:137085..139304Clytia hemisphaericaexon
TCONS_00047721-exon-scaffold_134-1575043694:137085..139304TCONS_00047721-exon-scaffold_134-1575043694:137085..139304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_134supercontigscaffold_134:137085..139304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.8824	18.4078	60.5642	70.5677	12.4903	8.23439	17.6461	18.1976	24.3661	24.9885	22.7709	24.5209	31.292	28.9634	39.5496	55.2895	36.6982	36.5149	19.4476	22.411	34.6601	37.4893	40.8601	39.8511	17.3881	17.2596	24.4808	22.2798	41.414	36.3888
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001199Cyt_B5-like_heme/steroid-bd
IPR008335Mopterin_OxRdtase_euk
IPR000572OxRdtase_Mopterin-bd_dom
IPR005066MoCF_OxRdtse_dimer
IPR018506Cyt_B5_heme-BS
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0030151molybdenum ion binding
GO:0020037heme binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0042128nitrate assimilation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042128 nitrate assimilation
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0030151 molybdenum ion binding
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00047721 vs. Swiss-Prot (Human)
Match: SUOX (Sulfite oxidase, mitochondrial OS=Homo sapiens GN=SUOX PE=1 SV=2)

HSP 1 Score: 476.093 bits (1224), Expect = 4.137e-159
Identity = 244/496 (49.19%), Postives = 336/496 (67.74%), Query Frame = 2 
Query:  281 GLAISGSLLKL--YIDGQNSPVECAKKAQNVFSRDEVSKRKTKQDGIWVIYDNNVYDITDFVEGHPGGATKIMLAAGDNLEPYWDMYAFHKKGEVLEMLKEYYIGKLRKEDWVVAR-KTEGPFANDPKRHPALLANSKEPFNGETPSVLANDNLITPNDLFFVRNHLPVPDLKGEDCRLKIEGT--SKCITLDLNELKSKFEKVEIISAIQCAGNRRSEMNKIKKVKGLSWSHNAISNAKWGGVLLRDLLLAAGIDPNDKTLKHVHFEGADKDVSGSCYGASIPINRVFAKHLPILVAYEMNDEPLPRDHGFPLRIVAPGIVGARNVKWLERIAVSPDEYQGHWQQNDYKPFSSNVDWDTVDFSKSVAIQELPVTSAICYPTDGAEVDQAEEELTVKGYAYSGGGRGILRVDVSVDDGKSWITAELNRSEQDLDSTYSWTLWECTVLIPEGHKGKMNIMCRAVDSSCNTQPDTVAPVWNLRGCLNNSWHNVELKVT 1753
            G  + G+LL L   +  Q+     A+++ ++++++EVS   + + GIWV   + V+D+T+FV+ HPGG +K+MLAAG  LEP+W +YA H +  V E+L +Y IG+L  ED V    +T  P+A+DP RHPAL  NS+ PFN E P  L  +N ITPN +FF RNHLPVP+L  +  RL + G    + ++L L++L + F + EI   +QCAGNRRSEM ++K+VKGL W   AIS A+W G  L D+L  AG    + T  HV FEG D D +G+ YGASIP+ R       +L+AYEMN +PLPRDHGFP+R+V PG+VGAR+VKWL R++V P+E   HWQ+ DYK FS +VDW+TVDF  + +IQELPV SAI  P DG  V+    E+T+KGYA+SGGGR ++RVDVS+D G +W  A+L+  EQ     ++W LW+    +P G K ++NI+C+AVD   N QPDTVAP+WNLRG L+N+WH V + V+
Sbjct:   54 GWRVMGTLLGLGAVLAYQDHRCRAAQESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVRELLAQYKIGELNPEDKVAPTVETSDPYADDPVRHPALKVNSQRPFNAEPPPELLTENYITPNPIFFTRNHLPVPNLDPDTYRLHVVGAPGGQSLSLSLDDLHN-FPRYEITVTLQCAGNRRSEMTQVKEVKGLEWRTGAISTARWAGARLCDVLAQAGHQLCE-TEAHVCFEGLDSDPTGTAYGASIPLARAMDPEAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGRVSVQPEESYSHWQRRDYKGFSPSVDWETVDFDSAPSIQELPVQSAITEPRDGETVESG--EVTIKGYAWSGGGRAVIRVDVSLDGGLTWQVAKLDGEEQRPRKAWAWRLWQLKAPVPAGQK-ELNIVCKAVDDGYNVQPDTVAPIWNLRGVLSNAWHRVHVYVS 544
The following BLAST results are available for this feature:
BLAST of TCONS_00047721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUOX4.137e-15949.19Sulfite oxidase, mitochondrial OS=Homo sapiens GN=... [more]
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