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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047711 ID=TCONS_00047711|Name=TCONS_00047711|organism=Clytia hemisphaerica|type=transcript|length=3830bpRun BLAST on NCBI protein sequence of TCONS_00047711-protein >TCONS_00047711-protein ID=TCONS_00047711-protein|Name=TCONS_00047711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1168bp MGVLISKKKPKPAPSQPELQPSQPKPEPVPEPEQEPSREPTPEVVSEEEERun BLAST on NCBI transcript from alignment at scaffold_134:119364..136772- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047711 ID=TCONS_00047711|Name=TCONS_00047711|organism=Clytia hemisphaerica|type=transcript|length=17409bp|location=Sequence derived from alignment at scaffold_134:119364..136772- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_134:119364..136772- >TCONS_00047711 ID=TCONS_00047711|Name=TCONS_00047711|organism=Clytia hemisphaerica|type=CDS|length=52560bp|location=Sequence derived from alignment at scaffold_134:119364..136772- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047711 vs. Swiss-Prot (Human)
Match: NWD1 (NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens GN=NWD1 PE=1 SV=3) HSP 1 Score: 383.259 bits (983), Expect = 1.320e-110 Identity = 289/931 (31.04%), Postives = 462/931 (49.62%), Query Frame = 2
Query: 761 KLKEYCQSTGYDFQVVDMRWGVRDEATADHMTSELCMKELKLCQDISTGPSFVTFLSHKYGYRPFPPKIVATEFEAMF-KVVEEQSDKDLLQKWFLKDENIIPTTYVLQPITDLLPNYGNHNVSKEERGKASGEWWAAFERMQVVFREAADKVFKGK--PNIRWK-YFQSVTEDEIQRGILKSKDAKSQCHWFYRNIQDLRQNIDDKAARNFIDKLGQN-LDDEAVGFTEDLKATKI---PGVLPQENINTYDIQWSAEHGVNPETSDVHKKYIEQLCDDFYRILVVMIDNGIKER-KAADIDDE----LVKEICQHSSMCKEKSRIFQGRQDIIDQIISYIGKEEEDEENRTTLVVYGESGCGKTSIMAKAA-ALAKQEYPDHIQVTRFLGTTADSSTISRLLNSICNQLQRSSQLPIDAAQPQSFKDQV-----ELLENIIEKMDDSELPCILFLDSIDQLSPDDGAYLMKWLPKKLPKQFKIIISALPDEKYNIINSL-KGMVPAEGFIEVTKLPTDTANDILNAWLVDSKRQLTTKQNEMVMNSFNQAPLPLFLKLAFDQATKWKSYQPMESISLEKNVKDSINRLFSDLERMHGKYLVSHALGLITASKHGLSDAEMDDLLSIDDEVLNDVYQYWVPPVR---RIPSLLWIRIRNDLGSYIIYRGASGVLVNNWYHRQFIETATERYLSIDQKKNFHTIMADYFLGKWSSGAKKGFT-DKSGKDGEEDRLVAAQPNKFQAKDDTEVFNYRKLSELPRHLIESDDLVNLKKRVLFDFDFLLCKLRAFGYQPLYEDVSEARLVYPQ--DKDIKMLSEILKISSRTLLIDPMQ---FPTQLYGRLD--SENLSPDIKRLLDDASN----SGIPCFIPNKICFETPGGSLLNTLAG-HTGMVEHASFTQDGKRLLSVGG-DSTLRIWDLE 3442
K + +CQ G F+VVD+RWG+R+ DH+T+ELC++E+ C S GP+FV + +YG P +I E+E + + SD +L+ ++F +DEN P TYVLQ P G +E + V R A + + +W+ Y +SV E EI+R +L S+D + F R IQDL ++I + A +D+L LD +A LK+ PGVL T+ + WS + VNP+ + H Y+++L + F VV ++ + R + D + L +EI H E + F GRQ+++ ++ + +D + T LV++G G GKT++M K A + + + V R LGT+ SS LL SIC Q+ + LP+ AQ +V LL + + +S + + +D +D + A + WLP P + +I+SA ++++L + ++ E + EV L + ++ L ++R L+ +++ S + P L+LAF++A KW S+ + L +++ ++L + LE+ HG+ LV+H LG I +S+HGLS+AE+ D+LS+DDEVL DVY+ W PP + R P LLW+R+R DLG Y+ R G + HRQ +E ERYLS ++ H ++AD+F G WS G KK T GK DR VA QP F V N RKL ELP HL+ S L LK+ VL ++ C+ + G + L +D L P ++ ++ E L++ + + M+ T+L RL + + + +L A + P +P + PGG L TL+G H G+ A ++ +LL +G D + +WD+E
Sbjct: 14 KCQTFCQRHGLMFEVVDLRWGIRNIEATDHLTTELCLEEVDRCWKTSIGPAFVALIGDQYGPCLIPSRIDEKEWEVLRDHLTARPSDLELVARYFQRDENAFPPTYVLQA-----PGTGEACEPEEAT-------------LTSVLRSGAQEARRLGLITQEQWQHYHRSVIEWEIERSLLSSEDREQGATVFLREIQDLHKHILEDCALRMVDRLADGCLDADAQNLLSSLKSHITDMHPGVL-----KTHRLPWSRDL-VNPK-NKTHACYLKELGEQF----VVRANHQVLTRLRELDTAGQELAWLYQEIRHHLWQSSEVIQTFCGRQELLARLGQQL--RHDDSKQHTPLVLFGPPGIGKTALMCKLAEQMPRLLGHKTVTVLRLLGTSQMSSDARGLLKSICFQVCLAYGLPLPPAQVLDAHTRVVQFFHTLLHTVSCRNFESLVLLLDAMDDLDSVR---HARRVPWLPLNCPPRVHLILSAC-SGALGVLDTLQRVLLDPEAYWEVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWASLPECGNPGRLRLAFEEARKWASF--TVPVPLATTAEEATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRDWTPPSKELLRFPPLLWVRLRRDLGYYLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKRHGVLADFFSGTWSQGTKKLITLPLVGKPLNLDRKVAPQPLWF----SHTVANLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFD---LCAPHLDSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSHPALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPGGPLRATLSGCHKGITAMAWGVEE--KLLVIGTQDGIMAVWDME 898 The following BLAST results are available for this feature:
BLAST of TCONS_00047711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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