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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047708 ID=TCONS_00047708|Name=TCONS_00047708|organism=Clytia hemisphaerica|type=transcript|length=2845bpRun BLAST on NCBI protein sequence of TCONS_00047708-protein >TCONS_00047708-protein ID=TCONS_00047708-protein|Name=TCONS_00047708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp NQLVALVCPDGMQVAYKKVVLLLVDVSSGNIAKTIKSKDSHTVLMCYDAQRun BLAST on NCBI transcript from alignment at scaffold_134:84269..119294- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047708 ID=TCONS_00047708|Name=TCONS_00047708|organism=Clytia hemisphaerica|type=transcript|length=35026bp|location=Sequence derived from alignment at scaffold_134:84269..119294- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_134:84269..119294- >TCONS_00047708 ID=TCONS_00047708|Name=TCONS_00047708|organism=Clytia hemisphaerica|type=CDS|length=9522bp|location=Sequence derived from alignment at scaffold_134:84269..119294- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047708 vs. Swiss-Prot (Human)
Match: NWD2 (NACHT and WD repeat domain-containing protein 2 OS=Homo sapiens GN=NWD2 PE=2 SV=3) HSP 1 Score: 140.198 bits (352), Expect = 1.782e-33 Identity = 108/372 (29.03%), Postives = 192/372 (51.61%), Query Frame = 2
Query: 1718 LNGDLTIDVPSQ----AKLIRIYISANSKDTTAERNALMTRVYPKLKEYC-QSTGYDFQVVDMRWGVRDEATADHMTSELCMKELQLCQDISAGPSFVSFLSHKYGYRPFPPKIVATEFETML-KVVEEQTDKDLLQKWFLKDDNSIPEMYILQPITEVLPNYENP-EASKKQRSKATGEWFKSFNQMQLVLRDASNKVLSEEDAIKYS------ISVTENEIEQGCSEIKNPD--DSAHWFNRTIMDIARYQDDKASRMFIDKNGQEI----DQNAIDLVNDLRENKLPSMLSSNSITTYDLSWLPEFGVDPEQSELHKEYLDKLCVDFERIMKEKIDRCIAKRDNSLSDDEVVGEIIHHQSFCRQKVSEF 2776
+G+LT +PS + +R++ISAN +DT AER AL VYPKL+E+C ++ G +FQV+D+ WGV ++ + MK L+ C SAGP FV L KYG P ++ A+EFE +L +E + + LL++W+ +D+NS+P Y L+P +E+L + N + S ++ T W + ++++ + + A+ K+L E+ +K+S S E+E + + + P + R I +I R+ ++D G E D A + + LR+ +P++++S+++ Y + + Q E+ Y++ L F M + I I + ++ D + EI+ H S C+ S +
Sbjct: 23 FSGNLTA-LPSHLVPAGRSVRVFISANPEDTGAERQALRENVYPKLREFCRENYGLEFQVIDLYWGVEEDEWDSPELQKTRMKLLENCLKTSAGPCFVGLLGEKYGNIRIPGEVEASEFEMILDAAIEAKLETKLLEEWYCRDENSVPAAYYLRPKSEMLRSNRNAMQPSTNAENEKT--WQEISDEIKKIFK-AAVKLLHEKGKMKHSQAKRYLFSAIEDEFDFALGK-QTPAFLKKCVCYIRKIANIERFVKIPEMGKYMDITGTEPRIIRDPEAQEKLIKLRDEFIPTIVASSNLRVYTSVTHCDMKLGYSQ-EIENHYIEGLGKQFYEDMIDIIQATIQQNFDT-ETDTLYDEILQHSSLCKTYASFY 387 The following BLAST results are available for this feature:
BLAST of TCONS_00047708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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