TCONS_00047705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047705
Unique NameTCONS_00047705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047705 ID=TCONS_00047705|Name=TCONS_00047705|organism=Clytia hemisphaerica|type=transcript|length=1569bp
GTTACCATCAAATTGTCGAATGTTAGTCTCTTTGTCGCCGAATGATGAAG
CTCTGGTATCGATCAAGGACGAATTCAAAGGTTCATCGTTTATCGAGGTC
GGAGGATTACAACCAAAAGCTTGTAAATCTCTCATCAACAAATGGCTTTC
ATGCAGCAAACGAAAACTTACCGATGAACAATATGGTATTCTATCAGAAT
GTTACCGAAAATCACCGACACCTCTCTTTCTCAGGTTCTGTTTTGATCAA
GCTACTAAATGGAAATCTTATCATGACATCGAAGACTGCTCGTTAGAATC
AAACATCAAAGATTCTATCGATCGTATATTCTCAGACTTGGAAAAAGTTC
ACGGTCAGACTCTGGTTAGTCATACAATTGGATTGATCAGAGCTTCCAGA
CATGGACTTTCAGATTCTGAGATCGAAGATCTTTTATCCATTGATGATGA
AGTTCTTAATGATATTTACCAGCAATGGTCTCCACCAATGAGACGTGTCT
CCTCCTTCACTTGGATTCAGATTCGAAACGCGTTAGGATTCTGTTTGACT
CGTAAGAATGTCAATGGTATTGTTCTCAACACATTCAGTCATTCACAAAT
TCAAGATGCAGCTAGTGAGAGATACCACAAAGATGCTGATGACCTTGAAA
CTTTCCGGGAATTGTTGGTTGACTATTTTATGGGAACGTGGAGCAATGGT
GTTTGCAAACCAACTAGTGGCGCTAAAGGTGCTGGCGAACCACAGGGAAA
AGATAGGCTTGTGGCTTCACAACCAAACAGATTCAAGCATGAGAATTCAC
CTGGGGAGCACTACAATTACCGAAAATTGAGCGAACTGCCTTTCCATTTA
ATGAAACTCAAAGACGTTGAAAAGATCAAAGACAATCTACtgtttaattt
tgatttccttGTAGCCACCATGCAAGCCCTTGGAGTTCAAGCTTTATTAA
ATACAGTATCTGAAGCCTCGAAGCTGTTTTCAAATGATGAAGATATCAGT
TATCTTTACAGTATCTTGACAAGCGCTTTACCAGTGCTTGAGAAATTCCC
AGACCAGCTTGCTTGTCAAATAGCTGGTCGTGTGGACGAGGAAGCACCTA
AGTCTGGTATCATTGGTATGCTGGAGAGAATCAAAGAATCAGATCAGCCT
TATTTCATCCCAACTAAGAAATGCTTCCAAACAGAAGAAGTGGTTTCAAC
TCCTGAGGGATTTAAAGGACACACTGATGCCATCAATGATGTCGTGGTTT
TAGACAATGGCAAAAAGCTTTTGACCGTCTCAGAAGATAAATCACTAAGA
ATTTGGAAGGTAGACAACTCAAGTGAAATACAAATGAATGAATTTGAAGA
TCCCATCATTAACGTCTTTCCTTATCAAAACGATGAAAAAGCAATTTTAC
TCTTCAAGTCAAAACTTCTTGCTGTAAATCTCTCGGACTTCGAAACGATA
TACGAGGAGTCATTCCAAGGTGAAAGAATCGGGGCTCTAACACCTGACGG
ATCACGTTTTGTTATGTTATGTACGGAAAAGAAAAACTACCGTGTTGCGA
TTTATGACGTATCCATGGA
Run BLAST on NCBI

protein sequence of TCONS_00047705-protein

>TCONS_00047705-protein ID=TCONS_00047705-protein|Name=TCONS_00047705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
LPSNCRMLVSLSPNDEALVSIKDEFKGSSFIEVGGLQPKACKSLINKWLS
CSKRKLTDEQYGILSECYRKSPTPLFLRFCFDQATKWKSYHDIEDCSLES
NIKDSIDRIFSDLEKVHGQTLVSHTIGLIRASRHGLSDSEIEDLLSIDDE
VLNDIYQQWSPPMRRVSSFTWIQIRNALGFCLTRKNVNGIVLNTFSHSQI
QDAASERYHKDADDLETFRELLVDYFMGTWSNGVCKPTSGAKGAGEPQGK
DRLVASQPNRFKHENSPGEHYNYRKLSELPFHLMKLKDVEKIKDNLLFNF
DFLVATMQALGVQALLNTVSEASKLFSNDEDISYLYSILTSALPVLEKFP
DQLACQIAGRVDEEAPKSGIIGMLERIKESDQPYFIPTKKCFQTEEVVST
PEGFKGHTDAINDVVVLDNGKKLLTVSEDKSLRIWKVDNSSEIQMNEFED
PIINVFPYQNDEKAILLFKSKLLAVNLSDFETIYEESFQGERIGALTPDG
SRFVMLCTEKKNYRVAIYDVSM
Run BLAST on NCBI

transcript from alignment at scaffold_134:78967..81885-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047705 ID=TCONS_00047705|Name=TCONS_00047705|organism=Clytia hemisphaerica|type=transcript|length=2919bp|location=Sequence derived from alignment at scaffold_134:78967..81885- (Clytia hemisphaerica)
GTTACCATCAAATTGTCGAATGTTAGTCTCTTTGTCGCCGAATGATGAAG
CTCTGGTATCGATCAAGGTGAGAATGATGGCCTTTTTTGCACTGAATCTA
AGGTTTTCTTGATTTCTTTTCTGTTTTTCCAGCCACGGTCAATAAAACAA
ATACAGTCGAGTCCTCAAATCTCCGTAAACCGAAATACTTCATAACTCAA
AGGTTTTTTTCTGGTCCTTTGAAAGGATTACTAGGTTATTTTGCGCCTTC
ACCTTTTGATATTTCACTAGGTGGAGCAATTACTTTGTGTTCTCCCTCCT
GCTTACCAGTAACGGGAACATGACTGTGGTTGCACATAATCAATCTACTT
GTGTGCGTCCAAATTTTGATCCCCTTTTAGAAAATGTATTAATCGAATTT
AATACGTTCATCTGGATTTATATTTCGGGAATGGTTTGCTGCGTTGATCA
TTATACACGGTTTTGGTTAAGTTTTAGGATTTTCTTTTTTTTTTTGATTA
GCAATTTTAAGTAACCAGGTTATCGTTTTTCTTTTAGGACGAATTCAAAG
GTTCATCGTTTATCGAGGTCGGAGGATTACAACCAAAAGCTTGTAAATCT
CTCATCAACAAATGGCTTTCATGCAGCAAACGAAAACTTACCGATGAACA
ATATGGTATTCTATCAGAATGTTACCGAAAATCACCGACACCTCTCTTTC
TCAGGTTCTGTTTTGATCAAGCTACTAAATGGAAATCTTATCATGACATC
GAAGACTGCTCGTTAGAATCAAACATCAAAGATTCTATCGATCGTATATT
CTCAGACTTGGAAAAAGTTCACGGTCAGACTCTGGTTAGTCATACAATTG
GATTGATCAGAGCTTCCAGACATGGACTTTCAGATTCTGAGATCGAAGAT
CTTTTATCCATTGATGATGAAGTTCTTAATGATATTTACCAGCAATGGTC
TCCACCAATGAGACGTGTCTCCTCCTTCACTTGGATTCAGATTCGAAACG
CGTTAGGATTCTGTTTGACTCGTAAGAATGTCAATGGTATTGTTCTCAAC
ACATTCAGTCATTCACAAATTCAAGATGCAGCTAGTGAGAGATACCACAA
AGATGCTGATGACCTTGAAACTTTCCGGGAATTGTTGGTTGACTATTTTA
TGGGAACGTGGAGCAATGGTGTTTGCAAACCAACTAGTGGCGCTAAAGGT
GCTGGCGAACCACAGGGAAAAGATAGGCTTGTGGCTTCACAACCAAATAG
ATTCNAAGCTGGTATTAGTGGCGCTAAAGATGCTAGCGAACCACAGCGCG
AAGATAGGCTTGTGGCTTCACAACCAAACAGATTCAAGCATGAGAATTCA
CCTGGGGAGCACTACAATTACCGAAAATTGAGCGAACTGCCTTTCCATTT
AATGAAACTCAAAGACGTTGAAAAGATCAAAGACAATCTACTGTTTAATT
TTGATTTCCTTGTAGCCACCATGCAAGCCCTTGGAGTTCAAGCTTTATTA
AATACAGTATCTGAAGCCTCGAAGCTGTTTTCAAATGATGAAGATATCAG
TTATCTTTACAGTATCTTGACAAGCGCTTTACCAGTGCTTGAGAAATTCC
CAGACCAGCTTGCTTGTCAAATAGCTGGTCGTGTGGACGAGGAAGCACCT
AAGTCTGGTATCATTGGTATGCTGGAGAGAATCAAAGAATCAGATCAGCC
TTATTTCATCCCAACTAAGAAATGCTTCCAAACAGAAGAAGTGGTTTCAA
CTCCTGAGGGATTTAAAGGACACACTGATGCCATCAATGATGTCGTGGTT
TTAGACAATGGCAAAAAGCTTTTGACCGTCTCAGAAGATAAATCACTAAG
GTATAATTTCTTCATCTTGTGAAACCATCACAGTTGTTTAAAAAGGAATC
ATAAAAACAGCGCGTGCAACGCCAGAACCCTTTGACGTCGAAAATGTTGA
ATAAGAATACACGGGTTGCAAAATCATATCAGTGCAGACAAAACATGTGA
TTACTCGAAAAGATTCACGTGATTTTATTTCCATGTTACTTGCTTTACAA
CTTACAGCTGGTAATCTTATTAGTGTCAATACATTCGAACCAATCAGAAA
TAAATGTCATGTAACAAGCACATAAAAATCAAAAATTGACTTATGTATTT
TTGATTCAGTTTCATTACGCTTTTACATTCAATTAATTTTATTTTATGAT
TCATTTTAGAATTTGGAAGGTAGACAACTCAAGTGAAATACAAATGAATG
AATTTGAAGATCCCATCATTAACGTCTTTCCTTATCAAAACGATGAAAAA
GCAATTTTACTCTTCAAGTCAAAACTTCTTGGTGAGCTTGTATTTGATAA
TTTCTGAATACCTTATCGGCCCCTTTACGTCGCCCCTTATTGCGCCGAAG
CTCAATTCCCCCATTTTTTAGCCCGGTCCTAATTTAATTCCGATCCCTTA
CGCCGGCCCTTATTATGCGTGGAACGAAAGATGACGGCAATAAGGGCCGG
CGTAGAAAGGGCTTACAATGTATGAAATTTTGGCGTGTTTCTTTCGCATA
TTTCGACATTTCCTCGTAAAAGAACCCAAAGGGGCCTTAGAAAAATACAT
TCAAATCTCATCCTTTTTGGTAAAGAGATTAATTTTTCTGGCTGACTTAA
TAAAAATTCTTACGTGTTCAATGAGACAGGGGTATAATTGGAAAACTCAT
TTCCGAAGAATGAAGTATCGTCCGCTCAGAATTCCTGGTCGTTTTAATGA
TATGTCTTTCATTTATTCCAGCTGTAAATCTCTCGGACTTCGAAACGATA
TACGAGGAGTCATTCCAAGGTGAAAGAATCGGGGCTCTAACACCTGACGG
ATCACGTTTTGTTATGTTATGTACGGAAAAGAAAAACTACCGTGTTGCGA
TTTATGACGTATCCATGGA

Coding sequence (CDS) from alignment at scaffold_134:78967..81885-

>TCONS_00047705 ID=TCONS_00047705|Name=TCONS_00047705|organism=Clytia hemisphaerica|type=CDS|length=7830bp|location=Sequence derived from alignment at scaffold_134:78967..81885- (Clytia hemisphaerica)
CTGTAAATCTCTCGGACTTCGAAACGATATACGAGGAGTCATTCCAAGGT
GAAAGAATCGGGGCTCTAACACCTGACGGATCACGTTTTGTTATGTTATG
TACGGAAAAGAAAAACTACCGTGTTGCGATTTATGACGTATCCATGAATT
TGGAAGGTAGACAACTCAAGTGAAATACAAATGAATGAATTTGAAGATCC
CATCATTAACGTCTTTCCTTATCAAAACGATGAAAAAGCAATTTTACTCT
TCAAGTCAAAACTTCTTGGCTTGTGGCTTCACAACCAAACAGATTCAAGC
ATGAGAATTCACCTGGGGAGCACTACAATTACCGAAAATTGAGCGAACTG
CCTTTCCATTTAATGAAACTCAAAGACGTTGAAAAGATCAAAGACAATCT
ACTGTTTAATTTTGATTTCCTTGTAGCCACCATGCAAGCCCTTGGAGTTC
AAGCTTTATTAAATACAGTATCTGAAGCCTCGAAGCTGTTTTCAAATGAT
GAAGATATCAGTTATCTTTACAGTATCTTGACAAGCGCTTTACCAGTGCT
TGAGAAATTCCCAGACCAGCTTGCTTGTCAAATAGCTGGTCGTGTGGACG
AGGAAGCACCTAAGTCTGGTATCATTGGTATGCTGGAGAGAATCAAAGAA
TCAGATCAGCCTTATTTCATCCCAACTAAGAAATGCTTCCAAACAGAAGA
AGTGGTTTCAACTCCTGAGGGATTTAAAGGACACACTGATGCCATCAATG
ATGTCGTGGTTTTAGACAATGGCAAAAAGCTTTTGACCGTCTCAGAAGAT
AAATCACTAAGGACGAATTCAAAGGTTCATCGTTTATCGAGGTCGGAGGA
TTACAACCAAAAGCTTGTAAATCTCTCATCAACAAATGGCTTTCATGCAG
CAAACGAAAACTTACCGATGAACAATATGGTATTCTATCAGAATGTTACC
GAAAATCACCGACACCTCTCTTTCTCAGGTTCTGTTTTGATCAAGCTACT
AAATGGAAATCTTATCATGACATCGAAGACTGCTCGTTAGAATCAAACAT
CAAAGATTCTATCGATCGTATATTCTCAGACTTGGAAAAAGTTCACGGTC
AGACTCTGGTTAGTCATACAATTGGATTGATCAGAGCTTCCAGACATGGA
CTTTCAGATTCTGAGATCGAAGATCTTTTATCCATTGATGATGAAGTTCT
TAATGATATTTACCAGCAATGGTCTCCACCAATGAGACGTGTCTCCTCCT
TCACTTGGATTCAGATTCGAAACGCGTTAGGATTCTGTTTGACTCGTAAG
AATGTCAATGGTATTGTTCTCAACACATTCAGTCATTCACAAATTCAAGA
TGCAGCTAGTGAGAGATACCACAAAGATGCTGATGACCTTGAAACTTTCC
GGGAATTGTTGGTTGACTATTTTATGGGAACGTGGAGCAATGGTGTTTGC
AAACCAACTAGTGGCGCTAAAGGTGCTGGCGAACCACAGGGAAAAGATAG
TTACCATCAAATTGTCGAATGTTAGTCTCTTTGTCGCCGAATGATGAAGC
TCTGGTATCGATCAAGCTGTAAATCTCTCGGACTTCGAAACGATATACGA
GGAGTCATTCCAAGGTGAAAGAATCGGGGCTCTAACACCTGACGGATCAC
GTTTTGTTATGTTATGTACGGAAAAGAAAAACTACCGTGTTGCGATTTAT
GACGTATCCATGAATTTGGAAGGTAGACAACTCAAGTGAAATACAAATGA
ATGAATTTGAAGATCCCATCATTAACGTCTTTCCTTATCAAAACGATGAA
AAAGCAATTTTACTCTTCAAGTCAAAACTTCTTGGCTTGTGGCTTCACAA
CCAAACAGATTCAAGCATGAGAATTCACCTGGGGAGCACTACAATTACCG
AAAATTGAGCGAACTGCCTTTCCATTTAATGAAACTCAAAGACGTTGAAA
AGATCAAAGACAATCTACTGTTTAATTTTGATTTCCTTGTAGCCACCATG
CAAGCCCTTGGAGTTCAAGCTTTATTAAATACAGTATCTGAAGCCTCGAA
GCTGTTTTCAAATGATGAAGATATCAGTTATCTTTACAGTATCTTGACAA
GCGCTTTACCAGTGCTTGAGAAATTCCCAGACCAGCTTGCTTGTCAAATA
GCTGGTCGTGTGGACGAGGAAGCACCTAAGTCTGGTATCATTGGTATGCT
GGAGAGAATCAAAGAATCAGATCAGCCTTATTTCATCCCAACTAAGAAAT
GCTTCCAAACAGAAGAAGTGGTTTCAACTCCTGAGGGATTTAAAGGACAC
ACTGATGCCATCAATGATGTCGTGGTTTTAGACAATGGCAAAAAGCTTTT
GACCGTCTCAGAAGATAAATCACTAAGGACGAATTCAAAGGTTCATCGTT
TATCGAGGTCGGAGGATTACAACCAAAAGCTTGTAAATCTCTCATCAACA
AATGGCTTTCATGCAGCAAACGAAAACTTACCGATGAACAATATGGTATT
CTATCAGAATGTTACCGAAAATCACCGACACCTCTCTTTCTCAGGTTCTG
TTTTGATCAAGCTACTAAATGGAAATCTTATCATGACATCGAAGACTGCT
CGTTAGAATCAAACATCAAAGATTCTATCGATCGTATATTCTCAGACTTG
GAAAAAGTTCACGGTCAGACTCTGGTTAGTCATACAATTGGATTGATCAG
AGCTTCCAGACATGGACTTTCAGATTCTGAGATCGAAGATCTTTTATCCA
TTGATGATGAAGTTCTTAATGATATTTACCAGCAATGGTCTCCACCAATG
AGACGTGTCTCCTCCTTCACTTGGATTCAGATTCGAAACGCGTTAGGATT
CTGTTTGACTCGTAAGAATGTCAATGGTATTGTTCTCAACACATTCAGTC
ATTCACAAATTCAAGATGCAGCTAGTGAGAGATACCACAAAGATGCTGAT
GACCTTGAAACTTTCCGGGAATTGTTGGTTGACTATTTTATGGGAACGTG
GAGCAATGGTGTTTGCAAACCAACTAGTGGCGCTAAAGGTGCTGGCGAAC
CACAGGGAAAAGATAGTTACCATCAAATTGTCGAATGTTAGTCTCTTTGT
CGCCGAATGATGAAGCTCTGGTATCGATCAAGCTGTAAATCTCTCGGACT
TCGAAACGATATACGAGGAGTCATTCCAAGGTGAAAGAATCGGGGCTCTA
ACACCTGACGGATCACGTTTTGTTATGTTATGTACGGAAAAGAAAAACTA
CCGTGTTGCGATTTATGACGTATCCATGAATTTGGAAGGTAGACAACTCA
AGTGAAATACAAATGAATGAATTTGAAGATCCCATCATTAACGTCTTTCC
TTATCAAAACGATGAAAAAGCAATTTTACTCTTCAAGTCAAAACTTCTTG
GCTTGTGGCTTCACAACCAAACAGATTCAAGCATGAGAATTCACCTGGGG
AGCACTACAATTACCGAAAATTGAGCGAACTGCCTTTCCATTTAATGAAA
CTCAAAGACGTTGAAAAGATCAAAGACAATCTACTGTTTAATTTTGATTT
CCTTGTAGCCACCATGCAAGCCCTTGGAGTTCAAGCTTTATTAAATACAG
TATCTGAAGCCTCGAAGCTGTTTTCAAATGATGAAGATATCAGTTATCTT
TACAGTATCTTGACAAGCGCTTTACCAGTGCTTGAGAAATTCCCAGACCA
GCTTGCTTGTCAAATAGCTGGTCGTGTGGACGAGGAAGCACCTAAGTCTG
GTATCATTGGTATGCTGGAGAGAATCAAAGAATCAGATCAGCCTTATTTC
ATCCCAACTAAGAAATGCTTCCAAACAGAAGAAGTGGTTTCAACTCCTGA
GGGATTTAAAGGACACACTGATGCCATCAATGATGTCGTGGTTTTAGACA
ATGGCAAAAAGCTTTTGACCGTCTCAGAAGATAAATCACTAAGGACGAAT
TCAAAGGTTCATCGTTTATCGAGGTCGGAGGATTACAACCAAAAGCTTGT
AAATCTCTCATCAACAAATGGCTTTCATGCAGCAAACGAAAACTTACCGA
TGAACAATATGGTATTCTATCAGAATGTTACCGAAAATCACCGACACCTC
TCTTTCTCAGGTTCTGTTTTGATCAAGCTACTAAATGGAAATCTTATCAT
GACATCGAAGACTGCTCGTTAGAATCAAACATCAAAGATTCTATCGATCG
TATATTCTCAGACTTGGAAAAAGTTCACGGTCAGACTCTGGTTAGTCATA
CAATTGGATTGATCAGAGCTTCCAGACATGGACTTTCAGATTCTGAGATC
GAAGATCTTTTATCCATTGATGATGAAGTTCTTAATGATATTTACCAGCA
ATGGTCTCCACCAATGAGACGTGTCTCCTCCTTCACTTGGATTCAGATTC
GAAACGCGTTAGGATTCTGTTTGACTCGTAAGAATGTCAATGGTATTGTT
CTCAACACATTCAGTCATTCACAAATTCAAGATGCAGCTAGTGAGAGATA
CCACAAAGATGCTGATGACCTTGAAACTTTCCGGGAATTGTTGGTTGACT
ATTTTATGGGAACGTGGAGCAATGGTGTTTGCAAACCAACTAGTGGCGCT
AAAGGTGCTGGCGAACCACAGGGAAAAGATAGTTACCATCAAATTGTCGA
ATGTTAGTCTCTTTGTCGCCGAATGATGAAGCTCTGGTATCGATCAAGCT
GTAAATCTCTCGGACTTCGAAACGATATACGAGGAGTCATTCCAAGGTGA
AAGAATCGGGGCTCTAACACCTGACGGATCACGTTTTGTTATGTTATGTA
CGGAAAAGAAAAACTACCGTGTTGCGATTTATGACGTATCCATGAATTTG
GAAGGTAGACAACTCAAGTGAAATACAAATGAATGAATTTGAAGATCCCA
TCATTAACGTCTTTCCTTATCAAAACGATGAAAAAGCAATTTTACTCTTC
AAGTCAAAACTTCTTGGCTTGTGGCTTCACAACCAAACAGATTCAAGCAT
GAGAATTCACCTGGGGAGCACTACAATTACCGAAAATTGAGCGAACTGCC
TTTCCATTTAATGAAACTCAAAGACGTTGAAAAGATCAAAGACAATCTAC
TGTTTAATTTTGATTTCCTTGTAGCCACCATGCAAGCCCTTGGAGTTCAA
GCTTTATTAAATACAGTATCTGAAGCCTCGAAGCTGTTTTCAAATGATGA
AGATATCAGTTATCTTTACAGTATCTTGACAAGCGCTTTACCAGTGCTTG
AGAAATTCCCAGACCAGCTTGCTTGTCAAATAGCTGGTCGTGTGGACGAG
GAAGCACCTAAGTCTGGTATCATTGGTATGCTGGAGAGAATCAAAGAATC
AGATCAGCCTTATTTCATCCCAACTAAGAAATGCTTCCAAACAGAAGAAG
TGGTTTCAACTCCTGAGGGATTTAAAGGACACACTGATGCCATCAATGAT
GTCGTGGTTTTAGACAATGGCAAAAAGCTTTTGACCGTCTCAGAAGATAA
ATCACTAAGGACGAATTCAAAGGTTCATCGTTTATCGAGGTCGGAGGATT
ACAACCAAAAGCTTGTAAATCTCTCATCAACAAATGGCTTTCATGCAGCA
AACGAAAACTTACCGATGAACAATATGGTATTCTATCAGAATGTTACCGA
AAATCACCGACACCTCTCTTTCTCAGGTTCTGTTTTGATCAAGCTACTAA
ATGGAAATCTTATCATGACATCGAAGACTGCTCGTTAGAATCAAACATCA
AAGATTCTATCGATCGTATATTCTCAGACTTGGAAAAAGTTCACGGTCAG
ACTCTGGTTAGTCATACAATTGGATTGATCAGAGCTTCCAGACATGGACT
TTCAGATTCTGAGATCGAAGATCTTTTATCCATTGATGATGAAGTTCTTA
ATGATATTTACCAGCAATGGTCTCCACCAATGAGACGTGTCTCCTCCTTC
ACTTGGATTCAGATTCGAAACGCGTTAGGATTCTGTTTGACTCGTAAGAA
TGTCAATGGTATTGTTCTCAACACATTCAGTCATTCACAAATTCAAGATG
CAGCTAGTGAGAGATACCACAAAGATGCTGATGACCTTGAAACTTTCCGG
GAATTGTTGGTTGACTATTTTATGGGAACGTGGAGCAATGGTGTTTGCAA
ACCAACTAGTGGCGCTAAAGGTGCTGGCGAACCACAGGGAAAAGATAGTT
ACCATCAAATTGTCGAATGTTAGTCTCTTTGTCGCCGAATGATGAAGCTC
TGGTATCGATCAAGCTGTAAATCTCTCGGACTTCGAAACGATATACGAGG
AGTCATTCCAAGGTGAAAGAATCGGGGCTCTAACACCTGACGGATCACGT
TTTGTTATGTTATGTACGGAAAAGAAAAACTACCGTGTTGCGATTTATGA
CGTATCCATGAATTTGGAAGGTAGACAACTCAAGTGAAATACAAATGAAT
GAATTTGAAGATCCCATCATTAACGTCTTTCCTTATCAAAACGATGAAAA
AGCAATTTTACTCTTCAAGTCAAAACTTCTTGGCTTGTGGCTTCACAACC
AAACAGATTCAAGCATGAGAATTCACCTGGGGAGCACTACAATTACCGAA
AATTGAGCGAACTGCCTTTCCATTTAATGAAACTCAAAGACGTTGAAAAG
ATCAAAGACAATCTACTGTTTAATTTTGATTTCCTTGTAGCCACCATGCA
AGCCCTTGGAGTTCAAGCTTTATTAAATACAGTATCTGAAGCCTCGAAGC
TGTTTTCAAATGATGAAGATATCAGTTATCTTTACAGTATCTTGACAAGC
GCTTTACCAGTGCTTGAGAAATTCCCAGACCAGCTTGCTTGTCAAATAGC
TGGTCGTGTGGACGAGGAAGCACCTAAGTCTGGTATCATTGGTATGCTGG
AGAGAATCAAAGAATCAGATCAGCCTTATTTCATCCCAACTAAGAAATGC
TTCCAAACAGAAGAAGTGGTTTCAACTCCTGAGGGATTTAAAGGACACAC
TGATGCCATCAATGATGTCGTGGTTTTAGACAATGGCAAAAAGCTTTTGA
CCGTCTCAGAAGATAAATCACTAAGGACGAATTCAAAGGTTCATCGTTTA
TCGAGGTCGGAGGATTACAACCAAAAGCTTGTAAATCTCTCATCAACAAA
TGGCTTTCATGCAGCAAACGAAAACTTACCGATGAACAATATGGTATTCT
ATCAGAATGTTACCGAAAATCACCGACACCTCTCTTTCTCAGGTTCTGTT
TTGATCAAGCTACTAAATGGAAATCTTATCATGACATCGAAGACTGCTCG
TTAGAATCAAACATCAAAGATTCTATCGATCGTATATTCTCAGACTTGGA
AAAAGTTCACGGTCAGACTCTGGTTAGTCATACAATTGGATTGATCAGAG
CTTCCAGACATGGACTTTCAGATTCTGAGATCGAAGATCTTTTATCCATT
GATGATGAAGTTCTTAATGATATTTACCAGCAATGGTCTCCACCAATGAG
ACGTGTCTCCTCCTTCACTTGGATTCAGATTCGAAACGCGTTAGGATTCT
GTTTGACTCGTAAGAATGTCAATGGTATTGTTCTCAACACATTCAGTCAT
TCACAAATTCAAGATGCAGCTAGTGAGAGATACCACAAAGATGCTGATGA
CCTTGAAACTTTCCGGGAATTGTTGGTTGACTATTTTATGGGAACGTGGA
GCAATGGTGTTTGCAAACCAACTAGTGGCGCTAAAGGTGCTGGCGAACCA
CAGGGAAAAGATAGTTACCATCAAATTGTCGAATGTTAGTCTCTTTGTCG
CCGAATGATGAAGCTCTGGTATCGATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030383XLOC_030383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047705-exon-scaffold_134-1575043694:81819..81885TCONS_00047705-exon-scaffold_134-1575043694:81819..81885Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1575043694:80660..81348TCONS_00047705-exon-scaffold_134-1575043694:80660..81348Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1575043694:80036..80578TCONS_00047705-exon-scaffold_134-1575043694:80036..80578Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1575043694:79555..79676TCONS_00047705-exon-scaffold_134-1575043694:79555..79676Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1575043694:78967..79114TCONS_00047705-exon-scaffold_134-1575043694:78967..79114Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1510915933:81819..81885TCONS_00047705-exon-scaffold_134-1510915933:81819..81885Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1510915933:80660..81348TCONS_00047705-exon-scaffold_134-1510915933:80660..81348Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1510915933:80036..80578TCONS_00047705-exon-scaffold_134-1510915933:80036..80578Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1510915933:79555..79676TCONS_00047705-exon-scaffold_134-1510915933:79555..79676Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1510915933:78967..79114TCONS_00047705-exon-scaffold_134-1510915933:78967..79114Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1491911889:81819..81885TCONS_00047705-exon-scaffold_134-1491911889:81819..81885Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1491911889:80660..81348TCONS_00047705-exon-scaffold_134-1491911889:80660..81348Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1491911889:80036..80578TCONS_00047705-exon-scaffold_134-1491911889:80036..80578Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1491911889:79555..79676TCONS_00047705-exon-scaffold_134-1491911889:79555..79676Clytia hemisphaericaexon
TCONS_00047705-exon-scaffold_134-1491911889:78967..79114TCONS_00047705-exon-scaffold_134-1491911889:78967..79114Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047705-proteinTCONS_00047705-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_134supercontigscaffold_134:78967..81885 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19998	1.52631	1.03378	0.288969	0.87948	0.667178	1.308	1.94669	1.56077	1.08916	2.06148	2.43229	6.33252	5.94577	2.57743	3.99	1.52748	1.64591	10.5931	14.451	2.09342	1.91917	1.31606	2.42016	3.8651	8.14885	1.18041	0.954364	0.521173	0.619492
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00047705 vs. Swiss-Prot (Human)
Match: NWD1 (NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens GN=NWD1 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 1.413e-44
Identity = 110/331 (33.23%), Postives = 176/331 (53.17%), Query Frame = 2 
Query:    2 LPSNC--RMLVSLSPNDEALVSIKDEFK-----GSSFIEVGGLQPKACKSLINKWLSCSKRKL----TDEQYGILSECYRKSPTPLFLRFCFDQATKWKSYHDIEDCSLESNIKDSIDRIFSDLEKVHGQTLVSHTIGLIRASRHGLSDSEIEDLLSIDDEVLNDIYQQWSPP---MRRVSSFTWIQIRNALGFCLTRKNVNGIVLNTFSHSQIQDAASERYHKDADDLETFRELLVDYFMGTWSNGVCKPTSGAKGAGEPQGKDRLVASQPNRFKHENSPGEHYNYRKLSELPFHLMKLKDVEKIKDNLLFNFDFLVATMQALGVQALLN 952
            LP NC  R+ + LS    AL  + D  +       ++ EV  L     + +I   L+ ++R L    TD  +  L EC      P  LR  F++A KW S+       L +  +++  ++ + LE+ HGQ LV+H +G I +SRHGLS++E++D+LS+DDEVL D+Y+ W+PP   + R     W+++R  LG+ L R+ V+G  L   +H Q+ +   ERY   ++  +    +L D+F GTWS G  K  +     G+P   DR VA QP  F H  +     N RKL ELP+HL+    +E++K  +L +  ++     + G++ LL+
Sbjct:  454 LPLNCPPRVHLILSACSGAL-GVLDTLQRVLLDPEAYWEVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWASLPEC----GNPGRLRLAFEEARKWASF--TVPVPLATTAEEATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRDWTPPSKELLRFPPLLWVRLRRDLGYYLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKR-HGVLADFFSGTWSQGTKKLIT-LPLVGKPLNLDRKVAPQPLWFSHTVA-----NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLD 770
The following BLAST results are available for this feature:
BLAST of TCONS_00047705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NWD11.413e-4433.23NACHT domain- and WD repeat-containing protein 1 O... [more]
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