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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047704 ID=TCONS_00047704|Name=TCONS_00047704|organism=Clytia hemisphaerica|type=transcript|length=1104bp
TTAAAGAAAGAGATTTCGAGCATCCTATATCGAAAGCAGGTGTTACTGGT
TCACACTTCAAAGAACAAATCAAAGTCAACAACGAATACATTGCATTCAC
GTCAGGGACAAACGAGTCTATTAATCTCCGTAAAATTAACGACCGCAAAT
TTACCGAAGAAATCACACCATCTTCGCCGTTCCAAATTTTCTCGCTCTCT
GAAGACGGTACAGTACGTATAATGTCTGTCATTGAACAAAAATCACGTTT
CAAGCCGAAGAAAGTTTATTTCGCCATTCTTAAAATCGGAGAAAGAGGAC
AAGTCGGGAGAGAAGCGAGCGAAGATATAGCGGAGATTGAACATGAATTT
GTCAGCAAATCGTTACATCTTGATTTACCCAATATTGATGGAGGAGTTCA
AAACAAAGACATGGATCCGTATCCATGGGGACCTGATGATTACATTCTTG
TTTGGATGGTTTAcaattcaaaacaaattaatttATTTGGAAGTCAGAAT
AAACACGAGCGAATGGTGTATGAATTGCCGATTTCAAGCAAACAGAAGAT
ATGCAATGCTCGTATATTGGATAGTAAAAGAATCTTGGTGATTTCAAAAA
CATCATCCAAAGAACCTGTTATTGAGATCCTGGAGGCTGATGACTTGGAT
ATAAAATCAGGACCAGATTTGATGGAAGCACGTGAGACACaatatgaaga
ttttaaagaacttgaagatgaagatgaagatgaaaacgaaGATGAAGAAG
GAGATGAGAAAAGTGCAGTGTCAGCGGAAGCAGCCGGTGATGGGGATATC
TTATGTCTTCGTAACCCTAATCCCAACTCTAATATGATGATCTCTATCGA
TCCATCAGAGATGTTATTGAATGTGTGGGATACTACTCTACATGTTGTCA
CCAAATCATTCTCGTTGGGTTTCGTACCTAAACTTATGCAGTTTATTGAC
GGGAATCGTGTTTTAATGTTGAACGAGAGGAAGAACTCGTTTATGCTTTT
ACACGTGATTGAAGATGAATTGGTGATGAAACAACAAGGGAGCAATGATG
CTACCCAGAATGCCCAGAGTCGAGATCAgcttcaaaatcaacaaaacgaa
CCCC Run BLAST on NCBI protein sequence of TCONS_00047704-protein >TCONS_00047704-protein ID=TCONS_00047704-protein|Name=TCONS_00047704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
KERDFEHPISKAGVTGSHFKEQIKVNNEYIAFTSGTNESINLRKINDRKF
TEEITPSSPFQIFSLSEDGTVRIMSVIEQKSRFKPKKVYFAILKIGERGQ
VGREASEDIAEIEHEFVSKSLHLDLPNIDGGVQNKDMDPYPWGPDDYILV
WMVYNSKQINLFGSQNKHERMVYELPISSKQKICNARILDSKRILVISKT
SSKEPVIEILEADDLDIKSGPDLMEARETQYEDFKELEDEDEDENEDEEG
DEKSAVSAEAAGDGDILCLRNPNPNSNMMISIDPSEMLLNVWDTTLHVVT
KSFSLGFVPKLMQFIDGNRVLMLNERKNSFMLLHVIEDELVMKQQGSNDA
TQNAQSRDQLQNQQNEP Run BLAST on NCBI transcript from alignment at scaffold_134:76498..78519- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047704 ID=TCONS_00047704|Name=TCONS_00047704|organism=Clytia hemisphaerica|type=transcript|length=2022bp|location=Sequence derived from alignment at scaffold_134:76498..78519- (Clytia hemisphaerica)
TTAAAGAAAGAGATTTCGAGCATCCTATATCGAAAGCAGGTGTTACTGGT
TCACACTTCAAAGAACAAATCAAAGTCAACAACGAATACATTGCATTCAC
GTCAGGGACAAACGAGTCTATTAATCTCCGTAAAATTAACGACCGCAAAT
TTACCGAAGAAATCACACCATCTTCGCCGTTCCAAATTTTCTCGCTCTCT
GAAGACGGTACAGTACGTATAATGTCTGTCATTGAACAAAAATCACGTTT
CAAGCCGAAGAAAGTTTATTTCGCCATTCTTAAAATCGGAGAAAGAGGAC
AAGTCGGGAGAGAAGCGAGCGAAGATATAGCGGAGATTGAACATGAATTT
GTCAGCAAATCGTTACATCTTGATTTACCCAATATTGATGGAGGAGTTCA
AAACAAAGACATGGATCCGTATCCATGGGGACCTGATGATTACATTCTTG
TTTGGATGGTTTACAATTCAAAACAAATTAATTTATTTGGAAGTCAGAAT
AAACACGAGCGAATGGTGTATGAATTGGTAAGATTCATTTTTCGAGAGAA
AAAACGCCTAAAAAGAGCTTTTAAAGCGTTTCTAAGCTATTTTAGTGAAA
ATTCGTCGGTTCTGCCCCCTTCGCTGGACTTCAATGGGTCTAATCCTTTG
TAAGGGCCACGAGGTTTAGGACCATTGGGAACCTGCTTAGTCCCGTGTGG
AGCAAAGAATACGCTTAACTAAGGCTACAGTAAAACGCTGTAAGCTTACA
GCGTAAGCCCGGGCGACTCTGGAGGCATTCTCGTCTGAGTTGTCTGACAA
AGTTGTCCAGGGCTTTTCTTTGGAGTTCTCGGATAACTCATTTTCTTCGC
TGTGTTTTAGAATGTAAAGATATTTAGTAGGGGGCAACTTATAAAATCCG
TAGCATCTTCCGTGGATATAAAGGTCAGTGGTTCAGACCCTAAAACATAA
ATCTGTTTATTCCACCTTTGCTACTTCACATTTGTTTGAAACAATTTGAT
GCTTGTCACACGTGACTTTCAAATCTACGACTTTTTTCCACATAGCCGAT
TTCAAGCAAACAGAAGATATGCAATGCTCGTATATTGGATAGTAAAAGAA
TCTTGGTGATTTCAAAAACATCATCCAAAGAACCTGTTATTGAGATCCTG
GAGGTAATTTGATGAAAATTATACACCCTACTGGCTAAGACTCCACATCG
TCTAAAGCCAAATAGGTCGTTTTACTGAAGCTTTTAAAAACTTCACCTTT
TTAATCTGAATGAATTTTTATTTGACGAATTAGACAAAACTAATAGCAAG
GTTTAGGTATCGATAGATAATTCACGCCGTTTGATGAATTTCTTCTAGCC
TTCTATAACTTTTCTACGGACTAGCCCGAAAGCAAGGTACTTACCCCGTA
AAGAAGTCAACTTTCCTTCTAGAACGTATTTCTGCTTGATATTTTATGTA
ATGACAACAACAACACGACTTTGAATGGCATTCTCTTTACATTTTGATAA
TTTTTGAAAACTTCAGTTGATAATGGCTGAAAATTATTTAATTTGTTCCT
AAGGCTGATGACTTGGATATAAAATCAGGACCAGATTTGATGGAAGCACG
TGAGACACAATATGAAGATTTTAAAGAACTTGAAGATGAAGATGAAGATG
AAAACGAAGATGAAGAAGGAGATGAGAAAAGTGCAGTGTCAGCGGAAGCA
GCCGGTGATGGGGATATCTTATGTCTTCGTAACCCTAATCCCAACTCTAA
TATGATGATCTCTATCGATCCATCAGAGATGTTATTGAATGTGTGGGATA
CTACTCTACATGTTGTCACCAAATCATTCTCGTTGGGTTTCGTACCTAAA
CTTATGCAGTTTATTGACGGGAATCGTGTTTTAATGTTGAACGAGAGGAA
GAACTCGTTTATGCTTTTACACGTGATTGAAGATGAATTGGTGATGAAAC
AACAAGGGAGCAATGATGCTACCCAGAATGCCCAGAGTCGAGATCAGCTT
CAAAATCAACAAAACGAACCCC Coding sequence (CDS) from alignment at scaffold_134:76498..78519- >TCONS_00047704 ID=TCONS_00047704|Name=TCONS_00047704|organism=Clytia hemisphaerica|type=CDS|length=3303bp|location=Sequence derived from alignment at scaffold_134:76498..78519- (Clytia hemisphaerica)
GCTGATGACTTGGATATAAAATCAGGACCAGATTTGATGGAAGCACGTGA
GACACAATATGAAGATTTTAAAGAACTTGAAGATGAAGATGAAGATGAAA
ACGAAGATGAAGAAGGAGATGAGAAAAGTGCAGTGTCAGCGGAAGCAGCC
GGTGATGGGGATATCTTATGTCTTCGTAACCCTAATCCCAACTCTAATAT
GATGATCTCTATCGATCCATCAGAGATGTTATTGAATGTGTGGGATACTA
CTCTACATGTTGTCACCAAATCATTCTCGTTGGGTTTCGTACCTAAACTT
ATGCAGTTTATTGACGGGAATCGTGTTTTAATGTTGAACGAGAGGAAGAA
CTCGTTTATGCTTTTACACGTGATTGAAGATGAATTGGTGATGAAACAAC
AAGGGAGCAATGATGCTACCCAGAATGCCCAGAGTCGAGATCAGCTTCAA
AATCAACAAAACGAACCCCCGATTTCAAGCAAACAGAAGATATGCAATGC
TCGTATATTGGATAGTAAAAGAATCTTGGTGATTTCAAAAACATCATCCA
AAGAACCTGTTATTGAGATCCTGGAGAAAGAAAGAGATTTCGAGCATCCT
ATATCGAAAGCAGGTGTTACTGGTTCACACTTCAAAGAACAAATCAAAGT
CAACAACGAATACATTGCATTCACGTCAGGGACAAACGAGTCTATTAATC
TCCGTAAAATTAACGACCGCAAATTTACCGAAGAAATCACACCATCTTCG
CCGTTCCAAATTTTCTCGCTCTCTGAAGACGGTACAGTACGTATAATGTC
TGTCATTGAACAAAAATCACGTTTCAAGCCGAAGAAAGTTTATTTCGCCA
TTCTTAAAATCGGAGAAAGAGGACAAGTCGGGAGAGAAGCGAGCGAAGAT
ATAGCGGAGATTGAACATGAATTTGTCAGCAAATCGTTACATCTTGATTT
ACCCAATATTGATGGAGGAGTTCAAAACAAAGACATGGATCCGTATCCAT
GGGGACCTGATGATTACATTCTTGTTTGGATGGTTTACAATTCAAAACAA
ATTAATTTATTTGGAAGTCAGAATAAACACGAGCGAATGGTGTATGAATT
GGCTGATGACTTGGATATAAAATCAGGACCAGATTTGATGGAAGCACGTG
AGACACAATATGAAGATTTTAAAGAACTTGAAGATGAAGATGAAGATGAA
AACGAAGATGAAGAAGGAGATGAGAAAAGTGCAGTGTCAGCGGAAGCAGC
CGGTGATGGGGATATCTTATGTCTTCGTAACCCTAATCCCAACTCTAATA
TGATGATCTCTATCGATCCATCAGAGATGTTATTGAATGTGTGGGATACT
ACTCTACATGTTGTCACCAAATCATTCTCGTTGGGTTTCGTACCTAAACT
TATGCAGTTTATTGACGGGAATCGTGTTTTAATGTTGAACGAGAGGAAGA
ACTCGTTTATGCTTTTACACGTGATTGAAGATGAATTGGTGATGAAACAA
CAAGGGAGCAATGATGCTACCCAGAATGCCCAGAGTCGAGATCAGCTTCA
AAATCAACAAAACGAACCCCCGATTTCAAGCAAACAGAAGATATGCAATG
CTCGTATATTGGATAGTAAAAGAATCTTGGTGATTTCAAAAACATCATCC
AAAGAACCTGTTATTGAGATCCTGGAGAAAGAAAGAGATTTCGAGCATCC
TATATCGAAAGCAGGTGTTACTGGTTCACACTTCAAAGAACAAATCAAAG
TCAACAACGAATACATTGCATTCACGTCAGGGACAAACGAGTCTATTAAT
CTCCGTAAAATTAACGACCGCAAATTTACCGAAGAAATCACACCATCTTC
GCCGTTCCAAATTTTCTCGCTCTCTGAAGACGGTACAGTACGTATAATGT
CTGTCATTGAACAAAAATCACGTTTCAAGCCGAAGAAAGTTTATTTCGCC
ATTCTTAAAATCGGAGAAAGAGGACAAGTCGGGAGAGAAGCGAGCGAAGA
TATAGCGGAGATTGAACATGAATTTGTCAGCAAATCGTTACATCTTGATT
TACCCAATATTGATGGAGGAGTTCAAAACAAAGACATGGATCCGTATCCA
TGGGGACCTGATGATTACATTCTTGTTTGGATGGTTTACAATTCAAAACA
AATTAATTTATTTGGAAGTCAGAATAAACACGAGCGAATGGTGTATGAAT
TGGCTGATGACTTGGATATAAAATCAGGACCAGATTTGATGGAAGCACGT
GAGACACAATATGAAGATTTTAAAGAACTTGAAGATGAAGATGAAGATGA
AAACGAAGATGAAGAAGGAGATGAGAAAAGTGCAGTGTCAGCGGAAGCAG
CCGGTGATGGGGATATCTTATGTCTTCGTAACCCTAATCCCAACTCTAAT
ATGATGATCTCTATCGATCCATCAGAGATGTTATTGAATGTGTGGGATAC
TACTCTACATGTTGTCACCAAATCATTCTCGTTGGGTTTCGTACCTAAAC
TTATGCAGTTTATTGACGGGAATCGTGTTTTAATGTTGAACGAGAGGAAG
AACTCGTTTATGCTTTTACACGTGATTGAAGATGAATTGGTGATGAAACA
ACAAGGGAGCAATGATGCTACCCAGAATGCCCAGAGTCGAGATCAGCTTC
AAAATCAACAAAACGAACCCCCGATTTCAAGCAAACAGAAGATATGCAAT
GCTCGTATATTGGATAGTAAAAGAATCTTGGTGATTTCAAAAACATCATC
CAAAGAACCTGTTATTGAGATCCTGGAGAAAGAAAGAGATTTCGAGCATC
CTATATCGAAAGCAGGTGTTACTGGTTCACACTTCAAAGAACAAATCAAA
GTCAACAACGAATACATTGCATTCACGTCAGGGACAAACGAGTCTATTAA
TCTCCGTAAAATTAACGACCGCAAATTTACCGAAGAAATCACACCATCTT
CGCCGTTCCAAATTTTCTCGCTCTCTGAAGACGGTACAGTACGTATAATG
TCTGTCATTGAACAAAAATCACGTTTCAAGCCGAAGAAAGTTTATTTCGC
CATTCTTAAAATCGGAGAAAGAGGACAAGTCGGGAGAGAAGCGAGCGAAG
ATATAGCGGAGATTGAACATGAATTTGTCAGCAAATCGTTACATCTTGAT
TTACCCAATATTGATGGAGGAGTTCAAAACAAAGACATGGATCCGTATCC
ATGGGGACCTGATGATTACATTCTTGTTTGGATGGTTTACAATTCAAAAC
AAATTAATTTATTTGGAAGTCAGAATAAACACGAGCGAATGGTGTATGAA
TTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047704-exon-scaffold_134-1575043694:77993..78519 | TCONS_00047704-exon-scaffold_134-1575043694:77993..78519 | Clytia hemisphaerica | exon |
| TCONS_00047704-exon-scaffold_134-1575043694:77367..77474 | TCONS_00047704-exon-scaffold_134-1575043694:77367..77474 | Clytia hemisphaerica | exon |
| TCONS_00047704-exon-scaffold_134-1575043694:76498..76966 | TCONS_00047704-exon-scaffold_134-1575043694:76498..76966 | Clytia hemisphaerica | exon |
| TCONS_00047704-exon-scaffold_134-1510915933:77993..78519 | TCONS_00047704-exon-scaffold_134-1510915933:77993..78519 | Clytia hemisphaerica | exon |
| TCONS_00047704-exon-scaffold_134-1510915933:77367..77474 | TCONS_00047704-exon-scaffold_134-1510915933:77367..77474 | Clytia hemisphaerica | exon |
| TCONS_00047704-exon-scaffold_134-1510915933:76498..76966 | TCONS_00047704-exon-scaffold_134-1510915933:76498..76966 | Clytia hemisphaerica | exon |
| TCONS_00047704-exon-scaffold_134-1491911889:77993..78519 | TCONS_00047704-exon-scaffold_134-1491911889:77993..78519 | Clytia hemisphaerica | exon |
| TCONS_00047704-exon-scaffold_134-1491911889:77367..77474 | TCONS_00047704-exon-scaffold_134-1491911889:77367..77474 | Clytia hemisphaerica | exon |
| TCONS_00047704-exon-scaffold_134-1491911889:76498..76966 | TCONS_00047704-exon-scaffold_134-1491911889:76498..76966 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_134 | supercontig | scaffold_134:76498..78519 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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