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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047700 ID=TCONS_00047700|Name=TCONS_00047700|organism=Clytia hemisphaerica|type=transcript|length=5023bpRun BLAST on NCBI protein sequence of Collagen protein >TCONS_00047700-protein ID=TCONS_00047700-protein|Name=Collagen protein|organism=Clytia hemisphaerica|type=polypeptide|length=1308bp MGEVGETGPPGPRGIRGDRGAIGPKGTGGKDGVDGPKGEPGSQGPSGPTGRun BLAST on NCBI transcript from alignment at scaffold_134:2..73368+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047700 ID=TCONS_00047700|Name=TCONS_00047700|organism=Clytia hemisphaerica|type=transcript|length=73367bp|location=Sequence derived from alignment at scaffold_134:2..73368+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_134:2..73368+ >TCONS_00047700 ID=TCONS_00047700|Name=TCONS_00047700|organism=Clytia hemisphaerica|type=CDS|length=31416bp|location=Sequence derived from alignment at scaffold_134:2..73368+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047700 vs. Swiss-Prot (Human)
Match: CO2A1 (Collagen alpha-1(II) chain OS=Homo sapiens GN=COL2A1 PE=1 SV=3) HSP 1 Score: 167.933 bits (424), Expect = 1.556e-41 Identity = 84/257 (32.68%), Postives = 128/257 (49.81%), Query Frame = 3
Query: 3732 KKDTTLDDLKAIESKFVVKSNKLNEKLDRMIKPDGSKQYPARTCQDILAFYPDSKSGFYWVDPNKGCIEDAIKVKCEFNKISTDEVERTEVQTCIDPSSVISMKAWPSKISTEAQRFFTED----HEF---DEKIEYKASLSQLTYLGYLNKEASQEVTVSCKRTPVWFDNRSDQKNHKRSFVFLGMNDQEFGAESEGRLTPEVIKDECQYMTNNAKETTLRFTSKKFIRLPITDFAPVRSTDTEAMFGVVPGPVCF 4481
+ D L+ +++ LN +++ + P+GS++ PARTC+D+ +P+ KSG YW+DPN+GC DA+KV C +E E +P++V W SK + +F E F D+ + + Q+T+L L+ E SQ +T CK + + D + N K++ + G ND E AE R T +KD C T +T + + S+K RLPI D AP+ E FGV GPVCF
Sbjct: 1240 RADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFC--------NMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAG--NLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1486 The following BLAST results are available for this feature:
BLAST of TCONS_00047700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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