|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047696 ID=TCONS_00047696|Name=TCONS_00047696|organism=Clytia hemisphaerica|type=transcript|length=922bp
NNgatggtgtaatttgggaatgacgccctttctgttttctgatcattttt
accacaaaaatctttttcaaaatatggttaaaagatacgtcatccgggag
ggatagagtcaaactttgaagagaattcttccctttagttttgatttcat
cgtgtttaagccaccttcccaacatccatcTCAAAGGATTCtaaaatgcg
ttcagcaaacagctaaaccggcgtgcgacgccgggtaccggctagttttt
ttttaattgacaaAGAAAGTTTAAccttttgttcaaattttctttattta
tcaGCGTTTTTGCGTTTTTGTTTTGGTAATGACGTCCTTGCTTAATTACT
AATGATGAAGAGATTGTTGGCTAATTCTACCAAAACCCCGGGGGATGCCC
GGTTTGTGCGAGCTAAAGGTCTCTTTTTACATCCTTGAAAGGGTTCCAAA
GTTACGGAAATCGAAAATTGACTACCTAGAAGGGGTTATACATTCTTGAA
ATTTCGACCGAATTCAATATTAAACgtcaaaaattgaacaaaacttTCAT
AACTTTTCCTCAGACAACCCAGTCATCTCGCAAACCTCGCAAACCAACAA
CGAACCCTCCGGGCCTAAGattattaaattagaaaatataCTATTTTTAT
TTCCAAATTCTGAGTCTCTTAAATTCTCAAATTATTACTTTGAAGAGTTC
TCTTTTACAATTTTATGATGGAGAGGCGTTACTTTGATGACAaagcaaaa
caaacaaaagaatttctcaaagtctaaaaaattcatgcatttttataatt
tgaacttCTGTATCTTTTCATTCGTTGCCCGGCTGATACTCGCTTTGTAC
acgtttttgtttgttttctgtacaaaaatattttattaacaAATTTTGAG
ACAAACAGTTTGTTGTTTTCCC Run BLAST on NCBI transcript from alignment at scaffold_133:287923..288844 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047696 ID=TCONS_00047696|Name=TCONS_00047696|organism=Clytia hemisphaerica|type=transcript|length=922bp|location=Sequence derived from alignment at scaffold_133:287923..288844 (Clytia hemisphaerica)
GGGAAAACAACAAACTGTTTGTCTCAAAATTtgttaataaaatatttttg
tacagaaaacaaacaaaaacgtGTACAAAGCGAGTATCAGCCGGGCAACG
AATGAAAAGATACAGaagttcaaattataaaaatgcatgaattttttaga
ctttgagaaattcttttgtttgttttgcttTGTCATCAAAGTAACGCCTC
TCCATCATAAAATTGTAAAAGAGAACTCTTCAAAGTAATAATTTGAGAAT
TTAAGAGACTCAGAATTTGGAAATAAAAATAGtatattttctaatttaat
aatCTTAGGCCCGGAGGGTTCGTTGTTGGTTTGCGAGGTTTGCGAGATGA
CTGGGTTGTCTGAGGAAAAGTTATGAaagttttgttcaatttttgacGTT
TAATATTGAATTCGGTCGAAATTTCAAGAATGTATAACCCCTTCTAGGTA
GTCAATTTTCGATTTCCGTAACTTTGGAACCCTTTCAAGGATGTAAAAAG
AGACCTTTAGCTCGCACAAACCGGGCATCCCCCGGGGTTTTGGTAGAATT
AGCCAACAATCTCTTCATCATTAGTAATTAAGCAAGGACGTCATTACCAA
AACAAAAACGCAAAAACGCtgataaataaagaaaatttgaacaaaaggTT
AAACTTTCTttgtcaattaaaaaaaaactagccggtacccggcgtcgcac
gccggtttagctgtttgctgaacgcattttaGAATCCTTTGAgatggatg
ttgggaaggtggcttaaacacgatgaaatcaaaactaaagggaagaattc
tcttcaaagtttgactctatccctcccggatgacgtatcttttaaccata
ttttgaaaaagatttttgtggtaaaaatgatcagaaaacagaaagggcgt
cattcccaaattacaccatcNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047696-exon-scaffold_133-1491911889:287923..288844 | TCONS_00047696-exon-scaffold_133-1491911889:287923..288844 | Clytia hemisphaerica | exon |
| TCONS_00047696-exon-scaffold_133-1510915933:287923..288844 | TCONS_00047696-exon-scaffold_133-1510915933:287923..288844 | Clytia hemisphaerica | exon |
| TCONS_00047696-exon-scaffold_133-1575043694:287923..288844 | TCONS_00047696-exon-scaffold_133-1575043694:287923..288844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:287923..288844 . |
Blast
The following BLAST results are available for this feature:
|
