TCONS_00047682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047682
Unique NameTCONS_00047682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047682 ID=TCONS_00047682|Name=TCONS_00047682|organism=Clytia hemisphaerica|type=transcript|length=762bp
TAGAAACCAAACGTATTCGACATGACAAGGATATTTCCTacctttgtttt
gttttggctGCTCATTTTCAACTAATTTTTCGTTAACTTCAGATCCGTTT
GTGAGAGGGTTTCACATCAGAGACATCGAAACATTAAATTACTATCAGCA
ATGGGTAAATTACAATCAACTAAAGTCATACGAGTTTGGATTTTAGGTGC
TACGCTATGTGCCACCATTTTCGTCGCACTTTCTTTGTCGTATGATTTTT
GGGCCATGAAGACAATTTTGGATACGGCAACTAACGAAGAAACGACCACT
TATTTCGGTCTGTGGAATAAATGTGAGGATAAGAGAGCAGGAAATGCACC
AGAAGAACCTTTGAAACCTTTGGTAAAAACATGTGAACCATATGGCAATG
GAAATATGGTAGCTGGATTTGAACATCCTCCAGAATTCATGAGGATCACT
CGAGGTCTGTTAATCCCAATGACGGTCATTTTGGGCGTAGCAACTATCGT
CATAGCAACAGTCATGTATTTGACACAACGGCCATTGGTTACATATGCTT
CTTTACCATTGCTTTTGGGATCAATTATTGGTATCATAGTATTGGGTGTA
TTTGCTGGCTCACTGGATcatgaaaaagatttcaaaacctACTCAGCTGC
ATGGTGCTTTTACTATTTCCTGATCGCCTGGTTCTTCACAATAAGTGCTT
TCCTGGCCTCACTGACAGACAGAAACTAAGTATTCATGATATCCAGATAG
CATTTTCTTGAT
Run BLAST on NCBI

protein sequence of TCONS_00047682-protein

>TCONS_00047682-protein ID=TCONS_00047682-protein|Name=TCONS_00047682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MGKLQSTKVIRVWILGATLCATIFVALSLSYDFWAMKTILDTATNEETTT
YFGLWNKCEDKRAGNAPEEPLKPLVKTCEPYGNGNMVAGFEHPPEFMRIT
RGLLIPMTVILGVATIVIATVMYLTQRPLVTYASLPLLLGSIIGIIVLGV
FAGSLDHEKDFKTYSAAWCFYYFLIAWFFTISAFLASLTDRN
Run BLAST on NCBI

transcript from alignment at scaffold_133:474871..478655-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047682 ID=TCONS_00047682|Name=TCONS_00047682|organism=Clytia hemisphaerica|type=transcript|length=3785bp|location=Sequence derived from alignment at scaffold_133:474871..478655- (Clytia hemisphaerica)
TAGAAACCAAACGTATTCGACATGACAAGGTATTATATAAAACTTTGCTC
TTTTACTTAATTAAGCTTGATAATCAAGTCATGATTCAGCATTTATTAGC
TCTGTCCAGGCTATTGTATTATTAATAACTTCCTATAGATCACTGTTGTT
AAATGTGATGAAAATATTCCAGGGGGGTCTGTTTGCTAAAATTTCTTTTA
GATTTTCCGTTTAAAACCAAAAATTTAAACGAATTTCAAACTGTAGATCA
AAAGGTTTCACAAGTAATTGATCTAGCCGAAGCTGCTTCCCAGGCTTTTC
TTTCTTAACAGAAAACAAAATAAGGCTAACTCCGGCAAAAACCCCCTGGC
TACTTGCTTAAAACAATATCAGATATTACACAGCTAATATTGCTCCATTA
TATCTATTTATTTTCAATTATAGGATATTTCCTACCTTTGTTTTGTTTTG
GCTGCTCATTTTCAACTAATTTTTCGTTAACTTCAGATCCGTTTGTGAGA
GGGTTTCACATCAGAGACATCGAAACATTAAATTACTATCAGCAATGGGT
AAATTACAATCAACTAAAGTCATACGAGTTTGGATTTTAGGTAAGAGTTA
TTTTACAGACGATAACAAACGCTTTTTTATCAAGCTGTCAACAACTAAAT
TTGCCGGATGACGGGTAAAGAAATGGAGGAAAACACACTAAAACTTTGGG
AATTTTGGGACAGAACTTTAGGTATTTTAGGGACAAAAATTAGGAATTTT
TCTTATATTGCAACCTTTAGGGGGACTGAAATTTTAAGGTTTTTAGGAAC
CTTTATGGGATATTGAAGGTCCAAAAAAGGCACCCCTAAGGGGGGTAAAT
ACCCTCAAATGGTACCCTCCATTTGCCATGTGATCCCCCACATCTCACAT
GTTACCATGAAACTGTATAACTTCAAAATGTTATTGTGGATGTTCGTTTG
AAGTTGTTTTTTATTTTTGTCTAAGTCTGAATCACGGACCTCTACAGAAC
AGCAGGTAGTATCAGGAGAACGAGACCGTTAGTGGATGCCAGCTGCATAG
ATTTTTCTCCAAATGGAATGGGCTTTTCCAGAAAAAAATCGCGCACCCCC
TGTTGAGGAGGTCCATTTCCGTTCCAAGGGGGTAAGGTTTGAAATGCAGT
GGAATTCCATAAGGGTAGACGAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAACAGGGGGTGCACGGTTTTTTTCTTTTTTTCAGCCCAATAAT
GAACTCGAACTCCAGTTACTAAAAAATTTTATTTCTACATAAGTGTTGTT
GCTTTATATCAGACACATATTTTATATCAGGACAGTGTCTGTGCCTATTG
TTATATTATGCTGATATAAGCAAAAAGATGTTTCTCTTTTCCTCTTTCTG
ACCAATCTTGCTCCACATTCGTGTCAATTCAATATCAAAAATCTTGTAAA
ATAAAATTGATGAGTAAGCAAACGATATCACTCTTATTTAAGCACTGGAA
TAATTGGCCAAAATATCGTCTCCAGTGCAGGAAATCTTACCGATCCTACA
CCGGGTCTGTGAGAAGGGCTGTTTACTTAAACCATCTCCTTTGTATATTA
ACAAATATTAATTTTTTCGTTTTTTCATTTAACAGGTGCTACGCTATGTG
CCACCATTTTCGTCGCACTTTCTTTGTCGTATGATTTTTGGGCCATGAAG
ACAATTTTGGATACGGCAACTAACGAAGAAACGACCACTTATTTCGGTCT
GTGGAATAAATGTGAGGATAAGAGAGCAGGAAATGCACCAGAAGAACCTT
TGAAACCTTTGGTAAAAACATGTGAACCATATGGCAATGGAAATATGGTA
GCTGGATTTGAACATCCTCCAGGTGAGAAAATAAATGCTTCTTTTTTATG
AGAACAAATAAATTTAGGCTGAGGCTTGCCTGTTTTCATTAAATTTTCGT
GACTTTCAATATTAGGGTTAAATTACGGAGCTTTATATAAACCTGACCAG
GCAAATATTTTGATCAGAATTTTTTGAAAGTGGTACCCGCGTCGAGGGCG
CTAGATCTAGTTTAGTTGCACTCTAGTGATCTAACACTACAATGGCTTTT
CCGCGGATACCACTTTCAAAAAACTCCGAACAAAAATGGAGGATATAGCT
TGGTCCATGGTTTATAAAGGTCATTACTGTGTGTAGGTTAAATTTTCTGA
AAGATTTATTCATTCATCTGGCTATGTTTGTAGAATGACTAATGCTATAA
ATATTTTAGAAAACCATGTAATATTTTAAAAGCTTAGCAATATAAAGTTG
ACGGAATCATACTTTCATTCCCACAGAATTCATGAGGATCACTCGAGGTC
TGTTAATCCCAATGACGGTCATTTTGGGCGTAGCAACTATCGTCATAGCA
ACAGTCATGTATTTGACACAACGGCCATTGGTTACATATGCTTCTTTACC
ATTGCTTTTGGGATGTAAGTCAAATTTTTCTTATTTATATTTTTCACCCC
TTTTAACACGGTATTGAGATTGTGGTTTCGATGTGTCCCACACCCCTATC
CCACACCCCTGTCTCACAGCCCTAGTTGATATTTTCTCCGCACAGCAGGA
ATAAAGATTCCTCTCGAAATCGCAATGGGTTTAGAAATTCTTTCTAAAAA
ATTCCATTGGGGATGGTTTTGGAATGTAATTATTTTACATTGAATTTTGA
TTGGGGATGGAATTAAAGTCTATTTTCAGTGAGGCTGAAATTNTGGGGAT
GGTTTTGGAATGTAATTATTTTACATTGAATTTTGATTGGGGATGGAATT
AAAGTCTATTTTCAGTGAGGCCGAAATTGTAGGGTATTTTTTCTATTGAG
GGACAAAACTTTGTGGGTTTTGGTTTGTAATACAGGGATGTCTTTCTCGC
TTCCCAATGGCGTATTTTGAAAAAGAGGAGATGCATCAGTTTAAAGTCTC
TAAAATCTGACCTTCAACCTTTTATTTTCTTCATTTTTCCATAGCAATTA
TTGGTATCATAGTATTGGGTGTATTTGCTGGCTCACTGGATCATGAAAAA
GATTTCAAAACCTACTCAGCTGCATGGTGCTTTTACTATTTCCTGATCGC
CTGGTTCTTCACAATAAGTGCTTTCCTGGCCTCACTGACAGACAGAAACT
AAGTATTCATGATATCCAGATAGCATTTTCTTGAT

Coding sequence (CDS) from alignment at scaffold_133:474871..478655-

>TCONS_00047682 ID=TCONS_00047682|Name=TCONS_00047682|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_133:474871..478655- (Clytia hemisphaerica)
CAATTATTGGTATCATAGTATTGGGTGTATTTGCTGGCTCACTGGATCAT
GAAAAAGATTTCAAAACCTACTCAGCTGCATGGTGCTTTTACTATTTCCT
GATCGCCTGGTTCTTCACAATAAGTGCTTTCCTGGCCTCACTGACAGACA
GAAACTAAAATTCATGAGGATCACTCGAGGTCTGTTAATCCCAATGACGG
TCATTTTGGGCGTAGCAACTATCGTCATAGCAACAGTCATGTATTTGACA
CAACGGCCATTGGTTACATATGCTTCTTTACCATTGCTTTTGGGATGTGC
TACGCTATGTGCCACCATTTTCGTCGCACTTTCTTTGTCGTATGATTTTT
GGGCCATGAAGACAATTTTGGATACGGCAACTAACGAAGAAACGACCACT
TATTTCGGTCTGTGGAATAAATGTGAGGATAAGAGAGCAGGAAATGCACC
AGAAGAACCTTTGAAACCTTTGGTAAAAACATGTGAACCATATGGCAATG
GAAATATGGTAGCTGGATTTGAACATCCTCCAGATGGGTAAATTACAATC
AACTAAAGTCATACGAGTTTGGATTTTAGCAATTATTGGTATCATAGTAT
TGGGTGTATTTGCTGGCTCACTGGATCATGAAAAAGATTTCAAAACCTAC
TCAGCTGCATGGTGCTTTTACTATTTCCTGATCGCCTGGTTCTTCACAAT
AAGTGCTTTCCTGGCCTCACTGACAGACAGAAACTAAAATTCATGAGGAT
CACTCGAGGTCTGTTAATCCCAATGACGGTCATTTTGGGCGTAGCAACTA
TCGTCATAGCAACAGTCATGTATTTGACACAACGGCCATTGGTTACATAT
GCTTCTTTACCATTGCTTTTGGGATGTGCTACGCTATGTGCCACCATTTT
CGTCGCACTTTCTTTGTCGTATGATTTTTGGGCCATGAAGACAATTTTGG
ATACGGCAACTAACGAAGAAACGACCACTTATTTCGGTCTGTGGAATAAA
TGTGAGGATAAGAGAGCAGGAAATGCACCAGAAGAACCTTTGAAACCTTT
GGTAAAAACATGTGAACCATATGGCAATGGAAATATGGTAGCTGGATTTG
AACATCCTCCAGATGGGTAAATTACAATCAACTAAAGTCATACGAGTTTG
GATTTTAGCAATTATTGGTATCATAGTATTGGGTGTATTTGCTGGCTCAC
TGGATCATGAAAAAGATTTCAAAACCTACTCAGCTGCATGGTGCTTTTAC
TATTTCCTGATCGCCTGGTTCTTCACAATAAGTGCTTTCCTGGCCTCACT
GACAGACAGAAACTAAAATTCATGAGGATCACTCGAGGTCTGTTAATCCC
AATGACGGTCATTTTGGGCGTAGCAACTATCGTCATAGCAACAGTCATGT
ATTTGACACAACGGCCATTGGTTACATATGCTTCTTTACCATTGCTTTTG
GGATGTGCTACGCTATGTGCCACCATTTTCGTCGCACTTTCTTTGTCGTA
TGATTTTTGGGCCATGAAGACAATTTTGGATACGGCAACTAACGAAGAAA
CGACCACTTATTTCGGTCTGTGGAATAAATGTGAGGATAAGAGAGCAGGA
AATGCACCAGAAGAACCTTTGAAACCTTTGGTAAAAACATGTGAACCATA
TGGCAATGGAAATATGGTAGCTGGATTTGAACATCCTCCAGATGGGTAAA
TTACAATCAACTAAAGTCATACGAGTTTGGATTTTAGCAATTATTGGTAT
CATAGTATTGGGTGTATTTGCTGGCTCACTGGATCATGAAAAAGATTTCA
AAACCTACTCAGCTGCATGGTGCTTTTACTATTTCCTGATCGCCTGGTTC
TTCACAATAAGTGCTTTCCTGGCCTCACTGACAGACAGAAACTAAAATTC
ATGAGGATCACTCGAGGTCTGTTAATCCCAATGACGGTCATTTTGGGCGT
AGCAACTATCGTCATAGCAACAGTCATGTATTTGACACAACGGCCATTGG
TTACATATGCTTCTTTACCATTGCTTTTGGGATGTGCTACGCTATGTGCC
ACCATTTTCGTCGCACTTTCTTTGTCGTATGATTTTTGGGCCATGAAGAC
AATTTTGGATACGGCAACTAACGAAGAAACGACCACTTATTTCGGTCTGT
GGAATAAATGTGAGGATAAGAGAGCAGGAAATGCACCAGAAGAACCTTTG
AAACCTTTGGTAAAAACATGTGAACCATATGGCAATGGAAATATGGTAGC
TGGATTTGAACATCCTCCAGATGGGTAAATTACAATCAACTAAAGTCATA
CGAGTTTGGATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030363XLOC_030363Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047682-exon-scaffold_133-1575043694:478627..478655TCONS_00047682-exon-scaffold_133-1575043694:478627..478655Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1575043694:478066..478232TCONS_00047682-exon-scaffold_133-1575043694:478066..478232Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1575043694:476184..476420TCONS_00047682-exon-scaffold_133-1575043694:476184..476420Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1575043694:475592..475729TCONS_00047682-exon-scaffold_133-1575043694:475592..475729Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1575043694:474871..475061TCONS_00047682-exon-scaffold_133-1575043694:474871..475061Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1510915933:478627..478655TCONS_00047682-exon-scaffold_133-1510915933:478627..478655Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1510915933:478066..478232TCONS_00047682-exon-scaffold_133-1510915933:478066..478232Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1510915933:476184..476420TCONS_00047682-exon-scaffold_133-1510915933:476184..476420Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1510915933:475592..475729TCONS_00047682-exon-scaffold_133-1510915933:475592..475729Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1510915933:474871..475061TCONS_00047682-exon-scaffold_133-1510915933:474871..475061Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1491911889:478627..478655TCONS_00047682-exon-scaffold_133-1491911889:478627..478655Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1491911889:478066..478232TCONS_00047682-exon-scaffold_133-1491911889:478066..478232Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1491911889:476184..476420TCONS_00047682-exon-scaffold_133-1491911889:476184..476420Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1491911889:475592..475729TCONS_00047682-exon-scaffold_133-1491911889:475592..475729Clytia hemisphaericaexon
TCONS_00047682-exon-scaffold_133-1491911889:474871..475061TCONS_00047682-exon-scaffold_133-1491911889:474871..475061Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047682-proteinTCONS_00047682-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:474871..478655 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12831	0.312806	0.290559	0.0710665	0.692133	0.546933	4.70144	7.02685	26.5986	7.76792	6.88975	10.169	30.7206	21.4852	59.9513	33.1519	2.93782	7.25642	66.9707	109.593	0.248115	0.0907663	0.220677	0.0668757	0.482163	0	0.351877	0.187766	0.0712071	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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