TCONS_00047668 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047668
Unique Name	TCONS_00047668
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1568

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_133:289578..294254-

transcript sequence

>TCONS_00047668 ID=TCONS_00047668|Name=TCONS_00047668|organism=Clytia hemisphaerica|type=transcript|length=1568bp
aACATTTTTCTCATTGCTGACTTCAGGtcgattttagaaatttatttctg
ctctaaatattgataaaaaaagtttgattgtTCAGTTCAGCCCTAAGTTA
TGAAGTGCTTGTTTTTGCTGTACTTTTTAATCATTGTGCATTCATGTCAA
TGACGAATAATCAGTATCTACTCGAACTAAAtgAAGAAGATACAAGTATG
CAACAAAGGGGAAATAGAAGGAACAAAGgaAAGCAGCCACCGCAACAGCA
ACAGTTTTACCAACCTTCACAGCAACAAAATTCATATACTCCAGAACTAT
TCGATGATATGTCAGCCTACAACCAACAACCACAACAAACCACACCACCA
AGTAGTATGATGCAACCCAATCAGCCGATGCAACCAGCTCAAATGACATT
CCCAGGACAAGAGCTTCTACAAGATCCAAACATGGCAAACATGGCAACTA
ATATGGCGATGCAATATGGACAGCAGTTTATGCCGGCTGGTAAAGAGTTT
GTTGAAAAGAAGCTTGATCATTTCTTgtcagtttcaaaattgaagTATTA
TTTTGCTGTTGACACTACTTACGTCCTCAAGAAATTAGGATTACTTGTCT
TCCCATTCGCACATAAGgaTTGGTCTTTGAAATATGATAATGCAGAACCA
GTTGCTCCTCGCTTTGAGATCAATGCTCCTGACCTTTATATTCCATCTAT
GGCTTTCGTTACATATGTATTGGTTTGCAGTGTAATACTTGGTACACAGA
ATAGATTCACTCCAGAGCAGCTAGGAATGACAGCAAGTTCAGCATTTGTT
TGGTTATGTATTGAATTAATTGTCATCGTAATGATTATGTATTTAATTGG
TATCTCTGGTAATATCAAATATTTGGATATACTTTCTTTTTGTGGTTACA
AATATGTTGGAATGATATTGACATCAGTATGCGGATTATTATTTGAAGCC
ACTGGATATTATGCTTCCTTATTATGGTGTAGTGTGGCTATCTCATTTTT
CATAGCTCGATCACTTCGCCTTGTCATTAATCCTGAGGATCATTCAGACA
GCGTATCTCGATCAACCAGTGGTAATAAACGACGTCTATACATTCTACTC
ACTGTCTCACTTATTCAACCAGTTTTCATGTACTTTTTAACGAAACATTT
GATTCATTATACACCAccgaaaattatgaaaatgtctGGATAATAAAAGC
AATGGAATCCTTTTTGAGAGAGAAGTTTTTAGTTTTATgtcaaattgtga
aattgtaTTTAACAATGGCTTTGGGAAAATCTAGTTCAGCCATAATATCG
AAATATCTGTTGGAGAAATTGGTATTGGGTTCGAAAACAATCCACGAATC
ATCAGTAGAAAATATCGAAGATTGCGGTTTCAGATAACATCGTTGTCAGT
GAAGACCCGAAGAAGATTCTGACGATTATAACTTGatcattttttttaac
tgacGATTATAACTTGatcatctatatattaatagcggtagtctgtatgt
cgttttgtcgtctttctttctgtctgtgctactttcgttttcgcacgcaa
tgtttttgttcttccaaa

Run BLAST on NCBI

transcript from alignment at scaffold_133:289578..294254-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047668 ID=TCONS_00047668|Name=TCONS_00047668|organism=Clytia hemisphaerica|type=transcript|length=4677bp|location=Sequence derived from alignment at scaffold_133:289578..294254- (Clytia hemisphaerica)
AACATTTTTCTCATTGCTGACTTCAGGTCGATTTTAGAAATTTATTTCTG
CTCTAAATATTGATAAAAAAAGTTTGATTGTTCAGTTCAGCCCTAAGTTA
TGAAGTGCTTGTTTTTGCTGTACTTTTTAATCATTGTGCATTCATGTCAA
TGACGAATAATCAGTATCTACTCGAACTAAATGGTATTTATTTTTAATTA
AAAATACATGTTAATGCATTTCAGTATCATTCACATTTCATCCAATTCAA
AAGTAGACACACAAACATCAATAATTTTTTGATTCTTGCTAGTACTACTA
ATTCTTCATGACTCATAGCATCTGTTTGCAATTTTTGACTTTTGCAGAAG
AAGATACAAGTATGCAACAAAGGGGAAATAGAAGGAACAAAGGTACCAAG
ATTAATCATTTTTCATACATTCACACACTAATTAGTAAATTGCAAAATAT
TCTTTAACTGTTAGGCTATACTTGTAAAATGAATTTCTTTTTACAGGAAA
ATTGAGTCCTTTAGATTCTTATTGATCTTTACTTTCAAAATTACTCACCC
TAATGACATTCGGAGAACACTCAATGACATCATTTTACGTCACATAACTC
ACACTCTGTACAAAAACATAGAATTGATTATACATACAGTATTTTCATCA
GCAAATTTTTTTTAGGAAAGCAGCCACCGCAACAGCAACAGTTTTACCAA
CCTTCACAGCAACAAAATTCATATACTCCAGAACTATTCGATGATATGTC
AGCCTACAACCAACAACCACAACAAACCACACCACCAAGTAGTATGATGC
AACCCAATCAGCCGATGCAACCAGCTCAAATGACATTCCCAGGACAAGAG
CTTCTACAAGATCCAAACATGGCAAACATGGCAACTAATATGGCGATGCA
ATATGGACAGCAGTTTATGCCGGCTGGTAAAGAGTTTGTTGAAAAGAAGG
TATCAAACTAATGTGGGTTTTTTACAATGTTTATTTAGAAAAGGTGTTAT
TCTGTTGAATTAAATTTGCATCACTCAGAACAATTATAACAAAATACCTT
CCGTTGTAATTACTTAGTTTCAGTTCTAGCGTCTGTAAAACTCTTTGCAT
TTTCAAAATCATTTCGTGATTGCAATATATCCAAATAATAATAACTTTAT
AGTAACAAATGTTTTGAGTGACAAACTCCGAAAAATTTAACAGATTTTAG
ACAACTGAGAAATTGTTTCCAAGATGGCAGGTCTATGAATATTTCTAGGA
GATATCTGATATTGATATTGACTACTTTTCCATTTTAGCTTGATCATTTC
TTGTCAGTTTCAAAATTGAAGTATTATTTTGCTGTTGACACTACTTACGT
CCTCAAGAAATTAGGATTACTTGTCTTCCCATTCGCACATAAGGTGAAAA
TCATTATTAATGTTATAATTCCAATGTGAAGTACATGGCAAGTTTCAAGA
TTTTTTGGTATCAAAACGTCTTATCTTAGCTTCAGATGATGGTTTTTAGA
AAGCATTGAAGGATTATGGAAAGAATCTTTTGGTCTATATTTCATTTTTG
CTATCCCTTTAAATTCTGACTAGTACATTGACCTTAAGCATGCACTCTTT
TTCGCTACTATGTAGAAACCACTCTTGAGAGCTGACATGGTTTCTACACA
GTAGCAAAGAAGAGTGCACACTAAAGAGAATGATTTTTATGTCTGGTACC
TATTTTGACTTTCCAAATGTTACAATTTTGAATCTTTCAATCCTCAACTT
TTGCTTTAAATCATGAATATTCTTCTTCTTTTTTCAGGATTGGTCTTTGA
AATATGATAATGCAGAACCAGTTGCTCCTCGCTTTGAGATCAATGCTCCT
GACCTTTATATTCCATGTAAGTTAAAAATAAAAGCATCCTTGTTTCTTTA
AAAGAGGCCTCTTGTCATGCAGAGTTTGAGCTCTTAATTGAAGAGGTCTT
GAATAAATGTAATCCGACATCGAAGTATTGATTCTGACCAAAAGTGTGTA
AAGACCTCAACTACAAAGGTGATATTGATTTAAGATAATACTGCTACGAC
CAAAGTTATGATAGATGACAATATGTCAAAATGTAGAATATTTTCAAGAG
GTGTCTCAACTAAAAATTAAGAATAAGTCAGCTTGAATTTGCTGCATTTA
AATTTTCCTGTATTATTTCTAGCTATGGCTTTCGTTACATATGTATTGGT
TTGCAGTGTAATACTTGGTACACAGAATAGGTATGACTTTAAAAGGTTAC
CATTATCCCTTAAATTTTAAGGGGGAGGGGGGTTACTAGGGTTGTGAGCT
GACGGGTATGTTCCGCCCCACTTTCAACCCTCGCACCCTTAGCAGGACTA
AAAAGGAGGAAAATAGGAGAAATTTGTGAAATATTTTTAATATCCCCTTA
TTGGGACCAAATTTGACCAATTTAAGATTTTTTACGGGGCAAATAATTCA
AAAAATTGAAATTTCCCTATTTTTCCGACCCTAAGTGGGACTGAATTTTC
TTCTTAAAAAACACTAAAAATGCTTGAATAAGTGGACCTTGAAGTGTATT
TTGTTTTGTAAAAATAGTTAAAAGTTTCCCTAAAGCCATTTAGACTCATT
GTGAGAGGATTATATTTAAATTTAACAAATACCATCAAGGGTTTTGCTTT
GTGTTTGGTAGGATTGCGAATGAAAAATTAACTCGCGATCTCTAGATTCT
AGACCGGCGAATTCTTAGGAGTGTGTTGAGTGTATTGATTAGCATAAATA
TGTACTTGATGCGACGAACAGAACTTATCAAACGGCGAATTGGAATTTTT
TTCGAATAAGACCCCTGATGGGTGACCATTCATTTCCTTTCATTTAGATT
CACTCCAGAGCAGCTAGGAATGACAGCAAGTTCAGCATTTGTTTGGTTAT
GTATTGAATTAATTGTCATCGTAATGATTATGTATTTAATTGGTATCTCT
GGTAATATCAAATATTTGGATATACTTTCTTTTTGTGGTTACAAATATGT
TGGGTAGGTAAATTGTTGAATTGAGAACGTTCAAAGTAAAAATTTATATA
TATGTATTCTGAGGTAGCTAATTGTCATTTGTGCGTTTTTCAAAATTCCT
TTTTGTCCACTACTTGAAATTATTGAATTATTGTCACATCGGGAAAAACT
ACATTACTTTGATTCTTTTTTACAGAATGATATTGACATCAGTATGCGGA
TTACTATTCGAAACCACTGGATATTATGCTTCCCTTTTATGGTGTAGTGT
GGCTATCTCATTTTTCATAGTAAGTATTATTGTTCATATATAATTATTTA
AACCTAGTTATACAGACACACAAACTCTTGAGTTTGTGTCAAAATAGGTG
GGGTTTGTACTAAAATCTCAGACACATAATTTGTAATGAAGAATTTTTTC
TCAAAAGTGCAGAAAACTTTTTTTGCATAAGTTGATACTTTGAATTATGC
TACTTAATGAATTGGGCNACTACATTACTCGGAAAAACCTTCATAACTCG
TGAGGACTCCAATTACTCGAACGAGTCTCGTCATTTAAAGAGAGTTTTAG
CTTTTTTCGCTTTTGTACACATTCTATTTCTTTGCTATTTTTTTCACTAT
CTCGTAAAGTAAAAGCTTTTTAGATAATTTAACCATGTCAAACGATAGCC
CTTGACCCAATATGCATTTGTGGTGTAATGTCAGTGGTGGTCAAAGCAAA
TTTTTCAGGAAATTAGCAATCCCAGGGCTTGCCCGAAAATTAGCGTTGCT
TGTAAAAAAGATGTGTATTACTCATGGGATTAAAATGTCAGGATTTAACC
CATAAAATGGAATTATTGTATTGTCTTTGCAGACCTTTCTCAATATTTTG
ATTCTTTTTCACAGAATGATATTGACATCAGTATGCGGATTATTATTTGA
AGCCACTGGATATTATGCTTCCTTATTATGGTGTAGTGTGGCTATCTCAT
TTTTCATAGTAAGTTTTATTGTTCATATATAATTATTTAAACCTAGTTAT
ACAGACACACAAACTCTTGAGTGTGTGTCAAAGTAGGTGGGGTTTGTACT
AAAATCTCAGACACATAAATTTAATTCGATTTAGTTTCATTCACTTTCTT
GTTCTCCACTTAGGCTCGATCACTTCGCCTTGTCATTAATCCTGAGGATC
ATTCAGACAGCGTATCTCGATCAACCAGTGGTAATAAACGACGTCTATAC
ATTCTACTCACTGTCTCACTTATTCAACCAGTTTTCATGTACTTTTTAAC
GAAACATTTGATTCATTATACACCACCGAAAATTATGAAAATGTCTGGAT
AATAAAAGCAATGGAATCCTTTTTGAGAGAGAAGTTTTTAGTTTTATGTC
AAATTGTGAAATTGTATTTAACAATGGCTTTGGGAAAATCTAGTTCAGCC
ATAATATCGAAATATCTGTTGGAGAAATTGGTATTGGGTTCGAAAACAAT
CCACGAATCATCAGTAGAAAATATCGAAGATTGCGGTTTCAGATAACATC
GTTGTCAGTGAAGACCCGAAGAAGATTCTGACGATTATAACTTGATCATT
TTTTTTAACTGACGATTATAACTTGATCATCTATATATTAATAGCGGTAG
TCTGTATGTCGTTTTGTCGTCTTTCTTTCTGTCTGTGCTACTTTCGTTTT
CGCACGCAATGTTTTTGTTCTTCCAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030354	XLOC_030354	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_133	supercontig	scaffold_133:289578..294254 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.1131	53.1993	25.542	19.9847	24.4786	18.6603	42.2205	49.8222	22.4579	27.6042	19.9494	23.654	21.4237	24.5562	23.4418	26.5271	20.8922	24.1233	15.0336	20.8803	20.9904	21.367	43.682	44.2629	37.1253	36.5067	14.0482	10.3244	31.9807	30.1937

Blast

[Close]

BLAST of TCONS_00047668 vs. Swiss-Prot (Human)
Match: YIF1B (Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 6.687e-79
Identity = 115/231 (49.78%), Postives = 164/231 (71.00%), Query Frame = 3

Query:  465 YGQQFMPAGKEFVEKKLDHFLSVSKLKYYFAVDTTYVLKKLGLLVFPFAHKDWSLKYDNAEPVAPRFEINAPDLYIPSMAFVTYVLVCSVILGTQNRFTPEQLGMTASSAFVWLCIELIVIVMIMYLIGISGNIKYLDILSFCGYKYVGMILTSVCGLLFEATGYYASLLWCSVAISFFIARSLRLVINPEDHSDSVSRSTSGNKRRLYILLTVSLIQPVFMYFLTKHLIH 1157
            YG      GKE V+K +D F+ ++KLKYYFAVDT YV +KLGLL FP+ H+DW ++Y    PVAPRF++NAPDLYIP+MAF+TYVLV  + LGTQ+RF+P+ LG+ ASSA  WL +E++ I++ +YL+ ++ ++  +D+++F GYKYVGMI   + GLLF   GYY  L WC VAI  F+ R+LRL I  +  ++ V    + N+ R+Y+ + V+  QP+ MY+LT HL+ 
Sbjct:   84 YGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAAAEGVPVRGARNQLRMYLTMAVAAAQPMLMYWLTFHLVR 314

The following BLAST results are available for this feature:

BLAST of TCONS_00047668 vs. Swiss-Prot (Human)

BLAST of TCONS_00047668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
YIF1B	6.687e-79	49.78	Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1	[more]

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TCONS_00047668 (transcript) - C. hemisphaerica