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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047658 ID=TCONS_00047658|Name=TCONS_00047658|organism=Clytia hemisphaerica|type=transcript|length=3066bpRun BLAST on NCBI protein sequence of TCONS_00047658-protein >TCONS_00047658-protein ID=TCONS_00047658-protein|Name=TCONS_00047658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=893bp MGDIVEFPYSQNTSTTPHYDNHNVDRNGNETTYNKDHDSYYINMDDGRAVRun BLAST on NCBI transcript from alignment at scaffold_133:56609..75116- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047658 ID=TCONS_00047658|Name=TCONS_00047658|organism=Clytia hemisphaerica|type=transcript|length=18508bp|location=Sequence derived from alignment at scaffold_133:56609..75116- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_133:56609..75116- >TCONS_00047658 ID=TCONS_00047658|Name=TCONS_00047658|organism=Clytia hemisphaerica|type=CDS|length=48276bp|location=Sequence derived from alignment at scaffold_133:56609..75116- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047658 vs. Swiss-Prot (Human)
Match: MPP5 (MAGUK p55 subfamily member 5 OS=Homo sapiens GN=MPP5 PE=1 SV=3) HSP 1 Score: 432.95 bits (1112), Expect = 1.543e-137 Identity = 259/584 (44.35%), Postives = 358/584 (61.30%), Query Frame = 1
Query: 1021 KSFNFSHFVTVMDSVKGKLPQPKQQEDFQTVQQLLNDPRFKSAIKMHNRMAKMQVERKTLNTKPVAIDSQFTASEVGVLLQNEENDPEATALGDILNKPELKEMLRAHDHIAKRECLNSFPEDAGGYEXXXXXXXXXXXFISGNDEQQVKIVRIDKT-DEPLGATVCNEGDAVVISRIVKGGAAEKSGLLHEGDEILEINNNSVRGKDXXXXXXXXXXXXGTLTFVLVPGMV----PHKETLRHEDILVMKALFDYEHGSDSYIPCEELGLSFMKGDLLEILNQNDPDWWQA-RFLEEKHHGLAGLVPSKQFQMQRELMKISVQGEDTEPITKEKKKCFCGRARRKGKKVPMNSKSAPLRENEILTYEDMIRIHPDPHKKRPIVLIGPPQVGRMEIRQKMISQFPSRFAAAVPHTTRTATSDEENGVDYNFVSRNAFEKSIAAAEFIEHGHFNGHYYGTSFSAVRKVVESGKTCVLNMHCQALPVLKTSNLLPHVIFITVPRIDQLNRLREYDENGEPFNPNVRLKKNELDELIEKARDMSRNYGHFFDKVLINNDLDGVFDEILDICNQLESEPQWVPSSWVR 2754
K + + ++ L + QED + QL+ + F++A K+HN + K P+ ++Q A EV +L+ + E L +LN P ++ +L AHD +A++E D YE I + VKIVRI+K D PLGATV NE D+V+ISRIVKGGAAEKSGLLHEGDE+LEIN +RGKDVNEV +LLS++ GTLTFVL+P P KET+ H +KA FDY+ D Y+PC ELGLSF KGD+L +++Q DP+WWQA R +E + LAGLVP K FQ QRE MK +++ ED EP K C +++ K + +K+ EILTYE+M H ++KRPI+LIGP G+ E+RQ+++++ RFA+AVPHTTR+ E G DY+FVSR AFE IAA +FIEHG F + YGTS +VR+V+ SGK C+L++ Q+L L+ S+L P++IFI P ++L L E NP K EL E+IEK R+M +N GH+FD ++N+DLD + E+L + N+L++EPQWVPS+W+R
Sbjct: 120 KILEIEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQNAFKIHNAITVHM--NKASPPFPLISNAQDLAQEVQTVLKPVHHK-EGQELTALLNTPHIQALLLAHDKVAEQEMQLEPITDERVYES-----------IGQYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSQQIKPPPAKETVIH-----VKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIE-EDKEPEKSGKLWCAKKNKKKRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRSRRDQEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTSIDSVRQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLA----KEGKNP----KPEELREIIEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRLINKLDTEPQWVPSTWLR 675 The following BLAST results are available for this feature:
BLAST of TCONS_00047658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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