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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047654 ID=TCONS_00047654|Name=TCONS_00047654|organism=Clytia hemisphaerica|type=transcript|length=2047bpRun BLAST on NCBI protein sequence of TCONS_00047654-protein >TCONS_00047654-protein ID=TCONS_00047654-protein|Name=TCONS_00047654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp MSSIGTGYDLSAHQFSPDGRVFQVEYADKAVSNSSTAVGIRCKDGVIFGVRun BLAST on NCBI transcript from alignment at scaffold_133:4078..95876- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047654 ID=TCONS_00047654|Name=TCONS_00047654|organism=Clytia hemisphaerica|type=transcript|length=91799bp|location=Sequence derived from alignment at scaffold_133:4078..95876- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_133:4078..95876- >TCONS_00047654 ID=TCONS_00047654|Name=TCONS_00047654|organism=Clytia hemisphaerica|type=CDS|length=9180bp|location=Sequence derived from alignment at scaffold_133:4078..95876- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047654 vs. Swiss-Prot (Human)
Match: PSA3 (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2) HSP 1 Score: 372.859 bits (956), Expect = 5.424e-124 Identity = 172/232 (74.14%), Postives = 204/232 (87.93%), Query Frame = 3
Query: 105 MSSIGTGYDLSAHQFSPDGRVFQVEYADKAVSNSSTAVGIRCKDGVIFGVEKLVTSKLYEPGTGKRIFTIDRHVGMAVAGLISDARQLVSVARDEAAHYRSVYGGPIPLKYLVDKISGYIHAYTLYSALRPFGCSVFLGSYEKLDGPELYMIEPSGVSYGYYGCASGKARQNAKTEIEKLQLENLTCKEAVKEVAKIIYVVHDEVKDKAFELELSWVGAESNGKHQMVPKDI 800
MSSIGTGYDLSA FSPDGRVFQVEYA KAV NSSTA+GIRCKDGV+FGVEKLV SKLYE G+ KR+F +DRHVGMAVAGL++DAR L +AR+EA+++RS +G IPLK+L D+++ Y+HAYTLYSA+RPFGCS LGSY DG +LYMI+PSGVSYGY+GCA GKARQ AKTEIEKLQ++ +TC++ VKEVAKIIY+VHDEVKDKAFELELSWVG +NG+H++VPKDI
Sbjct: 1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDI 232 The following BLAST results are available for this feature:
BLAST of TCONS_00047654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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