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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047572 ID=TCONS_00047572|Name=TCONS_00047572|organism=Clytia hemisphaerica|type=transcript|length=731bp
gcatttctttgcactgaaacccttcctattgataaaaatatatcaaggca
atataaccagaaatttcgcgtggataaattttagcgatctgtcgattcgg
cgtgttttagcgagatttattttagcgaaaaTAGGGAAAACTCGCTAAAA
CGCTAAAATTAGTCTCGCTAAAATTTCTACGATTAATATATTGATATTGA
TTATTATGTGAAAGTTAAATTGTGTTATTCGTTCCTTTGATTTTAGAGCC
AcctttttcaagtaaaaagCGTAAAGGAAAAAAGCAACAAAAGGACCAAA
ATGCATGTGCTTCAACAAAAAAAGTAAGTAAGAAAGATCCAATCAGAAAT
CGCGAAAGGAATGAAATCATCGAAAATAAACCCATCCCTGATGCACCGAA
ACCGTCATCAACAAGTCGATACCCGAAGAGAGAAGGCGCAAGGAAATCTT
ATAAAGAACAGCAAGTTCCTGATGAAGATCATTTTCTATATTGTGAGCAA
TGCGAAGATTTCTATTTTGGAGATTGTCCAGTTCATGGTCCGTTGTTTCC
GTTAGCTGATAAAGATTGTCCTGGTTCTTCGACTGAAAATCGCAGCTTAG
CCAGTCTTCCTGATGGTTTAGAAGTAAGAGAATCAAATATTCCTGGTGCT
GGACTTGGTGTCTTTGCTAAACGTGAATTTAACTCTGGTACAAGATTTGG
TCCTTACGAAGGGAAGAAAGTTCGACCTGAT Run BLAST on NCBI transcript from alignment at scaffold_132:201877..204167+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047572 ID=TCONS_00047572|Name=TCONS_00047572|organism=Clytia hemisphaerica|type=transcript|length=2291bp|location=Sequence derived from alignment at scaffold_132:201877..204167+ (Clytia hemisphaerica)
gcatttctttgcactgaaacccttcctattgataaaaatatatcaaggca
atataaccagaaatttcgcgtggataaattttagcgatctgtcgattcgg
cgtgttttagcgagatttattttagcgaaaaTAGGGAAAACTCGCTAAAA
CGCTAAAATTAGTCTCGCTAAAATTTCTACGATTAATATATTGATATTGA
TTATTATGTGAAAGTTAAATTGTGTTATTCGTTCCTTTGATTTTAGAGCC
AcctttttcaagtaaaaagCGTAAAGGAAAAAAGCAACAAAAGGTAGTTA
AATAAACAGTAATCAGCCCTCTACATATTTGACATCTCTCTTGTCGAATG
ATGCATTTTAGAAGAGAGAAATCAATTTCCATGTTTTTACAGGTTTTTAT
TATTATCATGTTTGAGACCGGTTCTTCTTTGGATCGAATTGGTTGACTCT
TCCTAGTTGAATTCATGAAGAAATATTTTCCCTTATGAATATGGTCGTTC
TTCTTTGGGTTGAGTTGCCCTTTTCTGAAACTGAAACTCATTAAAACTCT
CGGTTATTACTTCGGTTTGCACTCAACTCCTTCACTTTAACAgtgaaatt
gataaaaaatagaaTTAAATTTCATAACGAAAAAAGGGCAATTATGTATG
GCGCGCGAAAGTGCTATAAAATACTATCGTttttataatactatcttttc
tagtgtaatactatcttttctaaTATGATACTATCTTTTCTAATAAATAA
TACTATCTTCTTCTAATAAATAATAGTCGAGTTAATAAGTTTGAGTTGAA
AAACTCGAGTTCGAGTTATAAGCTGCATGTattttgtgacgtcacaaata
taccattttaaCGTCATCTTACAATTTCCCAACTCGAAAATGTAAGTTAA
AGACAAATTGACGGGTTAAAAAGGAGGTCTGACTGCCGTGTCAAAAATGT
GATGACGTTGCAAAACGTTTGCAGTTTTTTATATCATTAAACAAAAGAGT
AAAACGCGCGTAACGTCAGTTGATTGTCAGggcgattttgaaaattggag
cCTTTAGATGGTCTAAAAACGCATTCAAATAGCTTAGTTGTGatatagga
agaaaaaaatattattaaattcGGTTTTTCCCGAAaaccacttttgaaaa
aattattggggggacATTGCCCCcggttgctacggcactgctctCAACTA
GACTTTTTCGTAACTCGACTTTTTTAACTCGACTTTTCTGAGCCTCGAAA
AGATAGCAAtaagttaaagaaaagaaagtaataaatttcaaaaaaagcgg
atagtattatatttgaaaagatagtattatatttgaaaagatagtattat
atttgaaaagatagtattatatttgaaaagatagtattatatttgaaaaa
catAGTATTATAAAAATGATAGTATTTTATAGCGCTTTCGCGCGCCATAA
TTATGTGATACAGAGTTGAATGAATAATGtggatttttctttcctttcat
aGTTTATCCTACTTTATAATCATACTTTTTTCAGGACCAAAATGCATGTG
CTTCAACAAAAAAAGTAAGTAAGAAAGATCCAATCAGAAATCGCGAAAGG
AATGAAATCATCGAAAATAAACCCATCCCTGATGCACCGAAACCGTCATC
AACAAGTCGATACCCGAAGAGAGAAGGCGCAAGGAAATCTTATAAAGAAC
AGCAAGTTCCTGATGAAGATCATTTTCTATGTATGTATCTTctgaaatat
gtttttaaagTAGACGAAattctcatttaaaaaaaatcttaatttgtTAT
TTTAACTACTGTATTTGACATACGATAAGTTTTATTCATCAATTTCTGAT
GCATCGAAATTTTTTcggttttgtaataaaaaataatgtaGTAAGCTTTA
AAGAAACTCAAGACAAGACAAACGGTGGGTTTTTCATCAACAAGATATTT
GTTTCTTGACCTgtaaaatcaataacttttgagaGTTTGCAACCTTACAG
ATATTTGATATATCATATGAGTGTTATTTATTGAAATCTACAATTTCAGA
TTGTGAGCAATGCGAAGATTTCTATTTTGGAGATTGTCCAGTTCATGGTC
CGTTGTTTCCGTTAGCTGATAAAGATTGTCCTGGTTCTTCGACTGAAAAT
CGCAGCTTAGCCAGTCTTCCTGATGGTTTAGAAGTAAGAGAATCAAATAT
TCCTGGTGCTGGACTTGGTGTCTTTGCTAAACGTGAATTTAACTCTGGTA
CAAGATTTGGTCCTTACGAAGGGAAGAAAGTTCGACCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047572-exon-scaffold_132-1491911889:201877..202169 | TCONS_00047572-exon-scaffold_132-1491911889:201877..202169 | Clytia hemisphaerica | exon |
| TCONS_00047572-exon-scaffold_132-1510915933:201877..202169 | TCONS_00047572-exon-scaffold_132-1510915933:201877..202169 | Clytia hemisphaerica | exon |
| TCONS_00047572-exon-scaffold_132-1575043694:201877..202169 | TCONS_00047572-exon-scaffold_132-1575043694:201877..202169 | Clytia hemisphaerica | exon |
| TCONS_00047572-exon-scaffold_132-1491911889:203411..203606 | TCONS_00047572-exon-scaffold_132-1491911889:203411..203606 | Clytia hemisphaerica | exon |
| TCONS_00047572-exon-scaffold_132-1510915933:203411..203606 | TCONS_00047572-exon-scaffold_132-1510915933:203411..203606 | Clytia hemisphaerica | exon |
| TCONS_00047572-exon-scaffold_132-1575043694:203411..203606 | TCONS_00047572-exon-scaffold_132-1575043694:203411..203606 | Clytia hemisphaerica | exon |
| TCONS_00047572-exon-scaffold_132-1491911889:203926..204167 | TCONS_00047572-exon-scaffold_132-1491911889:203926..204167 | Clytia hemisphaerica | exon |
| TCONS_00047572-exon-scaffold_132-1510915933:203926..204167 | TCONS_00047572-exon-scaffold_132-1510915933:203926..204167 | Clytia hemisphaerica | exon |
| TCONS_00047572-exon-scaffold_132-1575043694:203926..204167 | TCONS_00047572-exon-scaffold_132-1575043694:203926..204167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_132 | supercontig | scaffold_132:201877..204167 + |
Blast
The following BLAST results are available for this feature:
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