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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047568 ID=TCONS_00047568|Name=TCONS_00047568|organism=Clytia hemisphaerica|type=transcript|length=2313bpRun BLAST on NCBI protein sequence of TCONS_00047568-protein >TCONS_00047568-protein ID=TCONS_00047568-protein|Name=TCONS_00047568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp MRLSMTQGYILYFNHCREPYKTYIILNMDDDNEDGWEVLTGPPQYTTNSERun BLAST on NCBI transcript from alignment at scaffold_132:103603..113356+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047568 ID=TCONS_00047568|Name=TCONS_00047568|organism=Clytia hemisphaerica|type=transcript|length=9754bp|location=Sequence derived from alignment at scaffold_132:103603..113356+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_132:103603..113356+ >TCONS_00047568 ID=TCONS_00047568|Name=TCONS_00047568|organism=Clytia hemisphaerica|type=CDS|length=12258bp|location=Sequence derived from alignment at scaffold_132:103603..113356+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047568 vs. Swiss-Prot (Human)
Match: ANR28 (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5) HSP 1 Score: 125.561 bits (314), Expect = 2.232e-29 Identity = 85/256 (33.20%), Postives = 134/256 (52.34%), Query Frame = 2
Query: 299 RDVNSQSPQKRETAMHYACRNDNANNLKTVEFLFGQGADLDLKDFRGKHSLLLAVAHGHLHIVKFLIENGANLHIVDKYNRSCVHWAAMHKYFDIVKLLLESGARVHYDVCNNWQPLHEAVKGGSLEIVKFLIENKAEIN-VNAAGNKSKPYTPLHIAAREGHTECLNYLLDCKAEVNAVNQGKQTPLHEAAFRGSKDCCRDLIL-RGADPHAKNLQMRTPLLDACNQGKLPCAIYCLDAGSFVNHKDRINDTALH 1060
RD N Q+P +H A N +K E L +++++ D G+ +L A GH +VK L+ GAN++ DK +R +HWAA + ++VKLL+ GA V ++ PLH A G + +VK+L++ ++N NA GN TPLH+A G +N L+DC A VN N+ TPLH AA C +L++ GAD + K+ +TPL G+ + + +G+ ++ +D+ +T LH
Sbjct: 103 RDKNWQTP------LHIAAAN---KAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGN-----TPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLH 344 HSP 2 Score: 104.76 bits (260), Expect = 7.509e-23 Identity = 109/384 (28.39%), Postives = 174/384 (45.31%), Query Frame = 2
Query: 224 LHAFCMAAALGDVAKLQQMLDAKLVRDVNSQSPQKRETAMHYACRNDNANNLKTVEFLFGQGADLDLKDFRGKHSLLLAVAHGHLHIVKFLIENGANLHIVDKYNRSCVHWAAMHKYFDIVKLLLESGARVHYDVCNNWQPLHEAVKGGSLEIVKFLIENKAEINVNAAGNKSKPYTPLHIAAREGHTECLNYLLDCKAEVNAVNQGKQTPLHEAAFRGSKDCCRDLILRGADPHAKNLQMRTPL--LDACNQGKLPCAIYCLDAGSFVNHKDRINDTALHHLLKNHGRFMFDDHDPMNPNDKKLGAEQLVAFADVLLQYGANPNAPNDEDETPLTIAETLQQNREVVDLMYKAMEKPRT------LLHLAKIA-----CRRIL 1336
LHA AA LGD A++ ++L R VN++ K T +H A + + + V+ L AD++ +D + L +A A+ + + L+ +N+++ D+ R+ +H AA + ++VKLLL GA ++ + + +H A G +E+VK L+ + AE+ K YTPLH AA G + YLLD ++N N TPLH A + G +LI GA + KN + TPL A G L C + G+ VN K + T L H+ HGRF + + ++Q GA + + TPL IA + L+ + + LHLA ++ CR++L
Sbjct: 45 LHA---AAYLGD-AEIIELLILSGAR-VNAKD-SKWLTPLHRAVASCSE---EAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTC----KDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGAL-CLELLVGNGADVNMKSKDGKTPL-HMTALHGRF---------------------SRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLL 392 HSP 3 Score: 90.5077 bits (223), Expect = 1.767e-18 Identity = 85/301 (28.24%), Postives = 139/301 (46.18%), Query Frame = 2
Query: 431 FRGKHSLLLAVAHGHLHIVKFLIENGANLHIVDKYNRSCVHWAAMHKYFDIVKLLLESGARVHYDVCNNWQPLHEAVKGGSLEIVKFLIENKAEINVNAAGNKSKPY-TPLHIAAREGHTECLNYLLDCKAEVNAVNQGKQTPLHEAAFRGSKDCCRDLILRGADPHAKNLQMRTPLLDACNQGKLPCAIYCLDAGSFVNHKDRINDTALHHLLKNHGRFMFDDHDPMNPNDKKLGAEQLVAFADVLLQYGANPNAPNDEDETPLTIAETLQQN---REVVD---LMYKAMEKPRTLLHLA 1312
R + SL+ A+ +G V+ LI +++ D R+ +H AA +I++LL+ SGARV+ PLH AV S E V+ L+++ A++N + K + TPLHIAA +C L+ + VN ++ +T LH AAF G + + L+ RGA+ +A + + R + A G + + G+ V KD+ + T LH + +++ LL G + N PN TPL +A Q+ E++D ++ + EK T LH A
Sbjct: 6 LRDQPSLVQAIFNGDPDEVRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNA-----RDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLH----------------------AAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFA 279 HSP 4 Score: 87.0409 bits (214), Expect = 2.035e-17 Identity = 81/299 (27.09%), Postives = 133/299 (44.48%), Query Frame = 2
Query: 275 QMLDAKLVRDVNSQSPQKRET-AMHYACRNDNANNLKTVEFLFGQGADLDLKDFRGKHSLLLAVAHGHLHIVKFLIENGANLHIVDKYNRSCVHWAAMHKYFDIVKLLLESGARVHYDVCNNWQPLHEAVKG--GSLEIVKFLIENKAEINVNAAGNKSKPY-----------------------------TPLHIAAREGHTECLNYLLDCKAEVNAVNQGKQTPLHEAAFRGSKDCCRDLILRGADPHAKNLQMRTPLLDACNQGKLPCAIYCLDAGSFVNHKDRINDTALHHLLKN 1075
+M+ L R N + K++ A+H+A +++ V+ L GA++ KD + L A + G + +VK+L++ G +++ + Y + +H A + +V L++ GA V+ + PLH A G+L ++ L+ N A++N+ + K+ + TPLHIAAR GH +N L+ A+ PLH AA G DCCR L+ G D + RT L A G L C L+ G+ N KD+ + LH+ N
Sbjct: 154 EMVKLLLSRGANINAFDKKDRRAIHWAAY---MGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGAL-CLELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAAN 448 HSP 5 Score: 87.0409 bits (214), Expect = 2.035e-17 Identity = 71/282 (25.18%), Postives = 124/282 (43.97%), Query Frame = 2
Query: 329 RETAMHYACRNDNANNLKTVEFLFGQGAD---LDLKDFRGKHSLLLAVAHGHLHIVKFLIENGANLHIVDKYNRSCVHWAAMHKYFDIVKLLLESGARVHYDVCNNWQPLHEAVKGGSLEIVKFLIENKAEINVNAAGNKSKPYTPLHIAAREGHTECLNYLLDCK----------------------------------AEVNAVNQGKQTPLHEAAFRGSKDCCRDLILRGADPHAKNLQMRTPLLDACNQGKL-PCAIYCLDAGSFVNHKDRINDTALH 1060
+ T +H A N ++ L+ L G +D++D G+ L+L+V +GH V L+ GAN+ DK+ R+ +H A+ + + V LL+ GA+ P+H + G + ++ L+++ A ++ N A + YT LH A GH C+ LL+ + + VNA + +TPLH AAF +C + L+ A ++ + +TPL+ A G+ + A + + +D +TALH
Sbjct: 617 KRTPIHAAATNGHSECLR---LLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLLRDSRGRTPIHLSAACGHIGVLGALLQSAASMDANPATADNHGYTALHWACYNGHETCVELLLEQEVFQKTEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATDSKGRTPLHAAAFTDHVECLQLLLSHNAQVNSVDSTGKTPLMMAAENGQTNTVEMLVSSASAELTLQDNSKNTALH 895 HSP 6 Score: 84.3445 bits (207), Expect = 1.376e-16 Identity = 73/244 (29.92%), Postives = 118/244 (48.36%), Query Frame = 2
Query: 335 TAMHYACRNDNANNLKTVEFLFGQGADLDLKDFRGKHSLLLAVAHGHLHIVKFLIENGANLH----IVDKYNRSCVHWAAMHKYFDIVKLLLESGARVHYDVCNNWQPLHEAVKGGSLEIVKFLIENKAEINVNAAGNKSKPYTPLHIAAREGHTECLNYLLDCKAEVNAVNQGKQTPLHEAAFRGSKDCCRDLILRG-ADPHAKNLQMRTPLLDACNQGKLPCAIYCLDAGSFVNHKDRINDT 1051
TA+H R + + V+ L GA L+D RG+ + L+ A GH+ ++ L+++ A++ D + + +HWA + + V+LLLE + N + PLH AV + + LI+ VNA +K + TPLH AA H ECL LL A+VN+V+ +TPL AA G + L+ A+ ++ T L AC++G A+ L+ + ++ IN T
Sbjct: 688 TALH---RGAVTGHEECVDALLQHGAKCLLRDSRGRTPIHLSAACGHIGVLGALLQSAASMDANPATADNHGYTALHWACYNGHETCVELLLEQEVFQKTE-GNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATDSKGR--TPLHAAAFTDHVECLQLLLSHNAQVNSVDSTGKTPLMMAAENGQTNTVEMLVSSASAELTLQDNSKNTALHLACSKGHETSALLILEK---ITDRNLINAT 922 The following BLAST results are available for this feature:
BLAST of TCONS_00047568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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