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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047557 ID=TCONS_00047557|Name=TCONS_00047557|organism=Clytia hemisphaerica|type=transcript|length=1123bp
GATGTGGTTTTGAAGTATGATATATAAACAAAAAGCAAAGTGGATAAATA
CTAAACATagttgacaaaattgataaataaatataaattaattaatttct
aTGAATAAATTACCATAAATAAACTTGAATTGGGATTTGTATTTGCAGAA
CAGAAAAACTACTAGAAAAATGCAAAGTGGACATgcaataaaataatgaa
aatgtaAATAGATCCTAAACTGAAAGCTGTGATCAAATTTGAGATGTGAC
TTGATCATTagaaattttgcagtcttgatAGTCAATTTTGCTCATGTAAC
AGGGACgttttgtgtaacgcttcattcaaaatgcataatgctgcaggagt
cacgtttcacgcgtcttcgtcgttgatgttcaagtattatgcgaaatttt
cgactttaaaagtCGTCTTCTTTTATTTATTGAGTGAGACGAGTCAAACC
ATTCAATTGAGTGAGACGATTCGAATGATTCGATTGAGTGAGAAGATTCA
AACGATTCGATTGAGTGAGAAGATTCAAACGATTCGATTGAGTGAGACGA
TTTGCACGCTTCGATGAGACGATTCGATTGAGTGAGACGATTCGAGCAAT
TCGATTGAGTGAGACGATTCAAGCAATTCGATTGAGTGAGACGATTCGAG
CAATTCAATTGAGTGAGACGATTCGAACAATTCGATCGAGTGAGACGATT
CGATTGAGTGAGACGATTCGAGCGATTCGATTGAGTGAGACGATTCGAAC
GATTCGATTGAGTGAGACAATTCGAACGAGTGAGACAATTCGAACGATTC
GATTGATTGAGATGATTCGATCAAGTCGATTGAATGAGGTGCTTTGAGCA
AGTTGATTTGTTGAGATGTTTCAAGTATTTCGATAGGTTGAGGTGTTTTG
GGTATTTCGATTGGATGAGATGTTTCCAGCAAGTGGAATTGCTTTTGGAG
ATTGACAAACAAGAATCTGATGTTGCTGGCATTTGAGATATGAGAATTGA
TGGTTGAATTTTGTAGGTACTTggttgaagtttggaagttgtcggttgaa
gtttggaagttgtCGGTTGAAGTTTGGAGGTTGTCAgttgaagtttggaa
gttgtCGGTTGAAGTTTGGAAGT Run BLAST on NCBI protein sequence of TCONS_00047557-protein >TCONS_00047557-protein ID=TCONS_00047557-protein|Name=TCONS_00047557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
FQTSTDNFQTSTDNLQTSTDNFQTSTDNFQTSTKYLQNSTINSHISNASN
IRFLFVNLQKQFHLLETSHPIEIPKTPQPIEILETSQQINLLKAPHSIDL
IESSQSIESFELSHSFELSHSIESFESSHSIESLESSHSIESSHSIELFE
SSHSIELLESSHSIELLESSHSIELLESSHSIESSHRSVQIVSLNRIV Run BLAST on NCBI transcript from alignment at scaffold_131:61369..62491 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047557 ID=TCONS_00047557|Name=TCONS_00047557|organism=Clytia hemisphaerica|type=transcript|length=1123bp|location=Sequence derived from alignment at scaffold_131:61369..62491 (Clytia hemisphaerica)
ACTTCCAAACTTCAACCGacaacttccaaacttcaacTGACAACCTCCAA
ACTTCAACCGacaacttccaaacttcaaccgacaacttccaaacttcaac
cAAGTACCTACAAAATTCAACCATCAATTCTCATATCTCAAATGCCAGCA
ACATCAGATTCTTGTTTGTCAATCTCCAAAAGCAATTCCACTTGCTGGAA
ACATCTCATCCAATCGAAATACCCAAAACACCTCAACCTATCGAAATACT
TGAAACATCTCAACAAATCAACTTGCTCAAAGCACCTCATTCAATCGACT
TGATCGAATCATCTCAATCAATCGAATCGTTCGAATTGTCTCACTCGTTC
GAATTGTCTCACTCAATCGAATCGTTCGAATCGTCTCACTCAATCGAATC
GCTCGAATCGTCTCACTCAATCGAATCGTCTCACTCGATCGAATTGTTCG
AATCGTCTCACTCAATTGAATTGCTCGAATCGTCTCACTCAATCGAATTG
CTTGAATCGTCTCACTCAATCGAATTGCTCGAATCGTCTCACTCAATCGA
ATCGTCTCATCGAAGCGTGCAAATCGTCTCACTCAATCGAATCGTTTGAA
TCTTCTCACTCAATCGAATCGTTTGAATCTTCTCACTCAATCGAATCATT
CGAATCGTCTCACTCAATTGAATGGTTTGACTCGTCTCACTCAATAAATA
AAAGAAGACGacttttaaagtcgaaaatttcgcataatacttgaacatca
acgacgaagacgcgtgaaacgtgactcctgcagcattatgcattttgaat
gaagcgttacacaaaacGTCCCTGTTACATGAGCAAAATTGACTatcaag
actgcaaaatttctAATGATCAAGTCACATCTCAAATTTGATCACAGCTT
TCAGTTTAGGATCTATTtacattttcattattttattgcATGTCCACTTT
GCATTTTTCTAGTAGTTTTTCTGTTCTGCAAATACAAATCCCAATTCAAG
TTTATTTATGGTAATTTATTCAtagaaattaattaatttatatttattta
tcaattttgtcaactATGTTTAGTATTTATCCACTTTGCTTTTTGTTTAT
ATATCATACTTCAAAACCACATC Coding sequence (CDS) from alignment at scaffold_131:61369..62491 >TCONS_00047557 ID=TCONS_00047557|Name=TCONS_00047557|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_131:61369..62491 (Clytia hemisphaerica)
TTCCAAACTTCAACCGacaacttccaaacttcaacTGACAACCTCCAAAC
TTCAACCGacaacttccaaacttcaaccgacaacttccaaacttcaaccA
AGTACCTACAAAATTCAACCATCAATTCTCATATCTCAAATGCCAGCAAC
ATCAGATTCTTGTTTGTCAATCTCCAAAAGCAATTCCACTTGCTGGAAAC
ATCTCATCCAATCGAAATACCCAAAACACCTCAACCTATCGAAATACTTG
AAACATCTCAACAAATCAACTTGCTCAAAGCACCTCATTCAATCGACTTG
ATCGAATCATCTCAATCAATCGAATCGTTCGAATTGTCTCACTCGTTCGA
ATTGTCTCACTCAATCGAATCGTTCGAATCGTCTCACTCAATCGAATCGC
TCGAATCGTCTCACTCAATCGAATCGTCTCACTCGATCGAATTGTTCGAA
TCGTCTCACTCAATTGAATTGCTCGAATCGTCTCACTCAATCGAATTGCT
TGAATCGTCTCACTCAATCGAATTGCTCGAATCGTCTCACTCAATCGAAT
CGTCTCATCGAAGCGTGCAAATCGTCTCACTCAATCGAATCGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047557-exon-scaffold_131-1491911889:61369..62491 | TCONS_00047557-exon-scaffold_131-1491911889:61369..62491 | Clytia hemisphaerica | exon |
| TCONS_00047557-exon-scaffold_131-1510915933:61369..62491 | TCONS_00047557-exon-scaffold_131-1510915933:61369..62491 | Clytia hemisphaerica | exon |
| TCONS_00047557-exon-scaffold_131-1575043694:61369..62491 | TCONS_00047557-exon-scaffold_131-1575043694:61369..62491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_131 | supercontig | scaffold_131:61369..62491 . |
Blast
The following BLAST results are available for this feature:
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