TCONS_00047549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047549
Unique NameTCONS_00047549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047549 ID=TCONS_00047549|Name=TCONS_00047549|organism=Clytia hemisphaerica|type=transcript|length=1394bp
aaaaaagcttttagtCAAGTGGTGcacttcagaaaaaaactacTTTTGTA
ATCAAACACTATAAAAGAAGGCaagagaaacatttttcattcACTTAATA
GTAAACACACCAACGAGCAACACATACCTCGAAAAATTCTCATTACAGAA
ACAAAAATATGGCATCATCAACGAAATTTCTATTCCAGGCTGCTCTGCTT
TTCGTATTTATTGCCGTGGTTCACAGTGGACAAGATCTCTTTACCGgTCC
ACGGCCAACTTTCACCACAGCAACATCAACCGTCACACCGAAAAACAAAT
GTGCTCATGCCTGCAGAGACTTATCGATACCGATTGGCATCATGCGTTGC
GCTAATTGTACAAGAGTCAATTTCACTTTAAAGGACCTTGGAAAACCAAC
TTTTACCCCCACGTTCACATGGGGTATTAAAATCACCAGACCTAACCAAA
AAGTCATTACAAAACCAACAATAACAACAACCTTATCAAAGAGCTACGAA
AGATTGTGCAAGGAGTGCTTACAATACTCTATGAAACCAAAATTATGTCA
TCAAGTCTGCCAAGCATGGTTAAACGCCCAAACCACACCAACCTTGGCAC
CCCGTCCTCCAGCAGTATTCAGAAACGGAAAAACTCAACCTCGACAACCT
ACAGCCAAACCCTCAGAATCTGAAATCAAAGTAACCAGAATTACTGAAAA
AGACTTAATTTCTACTTTGTTGGAATACAGAGAACGTGAGTTTTGGTTCG
TTGCGTTCGCTTTTGGTTGCGTGATCGTCTTGCTTCTCTTGATCGTCATC
ATGTTTTGCTCGCACAAACGACGCACGCACAAGATTGTCAAACCTCGAAT
GGATTTCTGCAACATCTAAACGATCtaactttaaaaaatgatgaGGTAGT
CATTCATGGTTCCTTAGCAGGATAAACCAATCAGAGACTCAGAAGGAGCC
TAAAGATGTAATGAAGTTACGGGGATATTCAGAGAACAGTCAATGTTGAA
TTCTCCCGATCAAAAGCAACCCAATTATTGGATGAAATAAACTTTTACAC
CAATCCAAACTCAAACTCTATTATAAACCACTACGAGCTGGGACTCGATA
AAGTGGAATGGAAACTCGCTTGAAAAAAATGAGGGTGTTTTATCcctctc
aaaaagttaaaatttaaaatatttttttgtttaaaaaatttctaatgTTA
TTTAATTTCAGTTGTTTNCcctctcaaaaattaaaatttaaaatattttt
ttgtttaaaaaatttctaatgTTATTTAATTTCAGTTGTTTTAATACATG
TAAATAGTTTTatgttaaaattaaaaaagtttttgtacaaaatttatttt
tctattaaATATTGCTGGTTCAATATATTTCGTAAATTAAAACA
Run BLAST on NCBI

transcript from alignment at scaffold_131:187688..190439-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047549 ID=TCONS_00047549|Name=TCONS_00047549|organism=Clytia hemisphaerica|type=transcript|length=2752bp|location=Sequence derived from alignment at scaffold_131:187688..190439- (Clytia hemisphaerica)
AAAAAAGCTTTTAGTCAAGTGGTGCACTTCAGAAAAAAACTACTTTTGTA
ATCAAACACTATAAAAGAAGGCAAGAGAAACATTTTTCATTCACTTAATA
GTAAACACACCAACGAGCAACACATACCTCGAAAAATTCTCATTACAGAA
ACAAAAATATGGCATCATCAACGAAATTTCTATTCCAGGCTGCTCTGCTT
TTCGTATTTATTGCCGTGGTTCACAGTGGACAAGATCTCTTTACCGGTAA
GTTCAATTTTCCTTCACCTCATACATTTCTATCTATTTTTAATTCTACCC
TCTTTACGCTGCTAGTGATATTTTCACACATCAGCCCCTATAACCCTACT
GCCTAACGAATTTCCTGCCAGTATTGGCCGTAAATGATGCTGAATGAACA
CAGCAATAAAACTTAAAAGCATGAATCAAAACATCAATTGCTGTATTTAA
CACATTTGAAAATTGCATTGAGTTCTTATCTTTAAATATTTTCCTTATTT
TCAGGTCCACGGCCAACTTTCACCACAGCAACATCAACCGTCACACCGAA
AAACAAATGTGCTCATGCCTGCAGAGACTTATCGATACCGATTGGCATCA
TGCGTTGCGCTAATTGTACAAGAGTCAATTTCACTTTAAAGGACCTTGGA
AAACCAACTTTTACCCCCACGTTCACATGGGGTATTAAAATCACCAGACC
TAACCAAAAAGTCATTACAAAACCAACAATAACAACAACCTTATCAAAGA
GCTACGAAAGATTGTGCAAGGAGTGCTTACAATACTCTATGAAACCAAAA
TTATGTCATCAAGTCTGCCAAGCATGGTTAAACGCCCAAACCACACCAAC
CTTGGCACCCCGTCCTCCAGCAGTATTCAGAAACGGAAAAACTCAACCTC
GAAAACCTACACCCAAACATTCAGAATCTGAAATCAAAGTAACCAGAATT
ACTGAAAAAGACTTAATTTCTACTTTGTTGGAGTACAGAGAACGTGAGTT
TTGGTTCGTTGCGTTCGCTTTTGGTTGCGTGATTGTCTTGCTTCTCTTGA
TCGTCATCATGTTTTGCTCGCACAAACGACGCACGCACAAGATTGTCAAA
CCTCGAATGGATTTCTGCAACATCTAAACGATCTAACTTTAAAAAATGAT
GAGGTAGTCATTCATGGTTCCTTAGCAGGATAAACCAATCAGAGACTCAG
AAGGAGCCTAAAGATGTAATGAAGTTACGGGGATATTCAGNCACAGAAAC
AAAAATATGGCATCGTCAACGAAATTTCTATTGCAGGCAACTCTGCTTTT
CGTATTTATTGCCATGGTTCACAGTGGACAAGATCTCTTTACCGGTAAGT
TCAATTTTCCTTCACCTCATACATTTCTATTTATTTTTAATTCTACCCTC
TTTACGCTGCTAGTGATATTTTCACACATCAGCCCCTATAACCCTACTGC
CTAACGAATTTCCTGCTTGTATTTTGGCCGTAAATGATGCTGAATGAACA
CAGCAATAAAACTTAAAAGCATGAATCAAAACATCAATTGCTGTATTTAA
CACATTTGAAAATTGCATTGAGTTCTTATCTTTAAATATTTTCCTTATTT
TCAGGTCCACGGCCAACTTTCACCACAGCAACATCAACCGTCACACCGAA
AAACAAATGTGCTCATGCCTGCAGAGACTTATCGATACCGATTGGCATCA
TGCGTTGCGCTAATTGTACAAGAGTCAATTTCACTTTAAAGGACCTTGGA
AAACCAACTTTTACCCCCACGTTCACATGGGGTATTAAAATCACCAGACC
TAACCAAAAAGTCATTACAAAACCAACAATAACAACAACCTTATCAAAGA
GCTACGAAAGATTGTGCAAGGAGTGCTTACAATACTCTATGAAACCAAAA
TTATGTCATCAAGTCTGCCAAGCATGGTTAAACGCCCAAACCACACCAAC
CTTGGCACCCCGTCCTCCAGCAGTATTCAGAAACGGAAAAACTCAACCTC
GACAACCTACAGCCAAACCCTCAGAATCTGAAATCAAAGTAACCAGAATT
ACTGAAAAAGACTTAATTTCTACTTTGTTGGAATACAGAGAACGTGAGTT
TTGGTTCGTTGCGTTCGCTTTTGGTTGCGTGATCGTCTTGCTTCTCTTGA
TCGTCATCATGTTTTGCTCGCACAAACGACGCACGCACAAGATTGTCAAA
CCTCGAATGGATTTCTGCAACATCTAAACGATCTAACTTTAAAAAATGAT
GAGGTAGTCATTCATGGTTCCTTAGCAGGATAAACCAATCAGAGACTCAG
AAGGAGCCTAAAGATGTAATGAAGTTACGGGGATATTCAGAGAACAGTCA
ATGTTGAATTCTCCCGATCAAAAGCAACCCAATTATTGGATGAAATAAAC
TTTTACACCAATCCAAACTCAAACTCTATTATAAACCACTACGAGCTGGG
ACTCGATAAAGTGGAATGGAAACTCGCTTGAAAAAAATGAGGGTGTTTTA
TCCCTCTCAAAAAGTTAAAATTTAAAATATTTTTTTGTTTAAAAAATTTC
TAATGTTATTTAATTTCAGTTGTTTNCCCTCTCAAAAATTAAAATTTAAA
ATATTTTTTTGTTTAAAAAATTTCTAATGTTATTTAATTTCAGTTGTTTT
AATACATGTAAATAGTTTTATGTTAAAATTAAAAAAGTTTTTGTACAAAA
TTTATTTTTCTATTAAATATTGCTGGTTCAATATATTTCGTAAATTAAAA
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030284XLOC_030284Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047549-exon-scaffold_131-1575043694:190194..190439TCONS_00047549-exon-scaffold_131-1575043694:190194..190439Clytia hemisphaericaexon
TCONS_00047549-exon-scaffold_131-1575043694:187688..188835TCONS_00047549-exon-scaffold_131-1575043694:187688..188835Clytia hemisphaericaexon
TCONS_00047549-exon-scaffold_131-1510915933:190194..190439TCONS_00047549-exon-scaffold_131-1510915933:190194..190439Clytia hemisphaericaexon
TCONS_00047549-exon-scaffold_131-1510915933:187688..188835TCONS_00047549-exon-scaffold_131-1510915933:187688..188835Clytia hemisphaericaexon
TCONS_00047549-exon-scaffold_131-1491911889:190194..190439TCONS_00047549-exon-scaffold_131-1491911889:190194..190439Clytia hemisphaericaexon
TCONS_00047549-exon-scaffold_131-1491911889:187688..188835TCONS_00047549-exon-scaffold_131-1491911889:187688..188835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:187688..190439 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.112427	0.0434447	0.076289	0.109005	1.97213	1.84078	19.9571	20.1137	2.13242	20.4118	3.22431	3.00143	44.0707	38.0498	65.0184	49.8975	21.4115	42.1809	38.4162	27.921	9.376	10.858	7.74999	8.93231	1.43795	0.168805	2.06378	4.39157	45.0667	24.6629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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