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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047548 ID=TCONS_00047548|Name=TCONS_00047548|organism=Clytia hemisphaerica|type=transcript|length=1529bp
TAATTTCTACTTTGTTGGAGTACAGAGAACGTGAGTTTTGGTTCGTTGCG
TTCGCTTTTGGTTGCGTGATTGTCTTGCTTCTCTTGATCGTCATCATGTT
TTGCTCGCACAAACGACGCACGCACAAGATTGTCAAACCTCGAATGGATT
TCTGCAACATCTAAACGATCtaactttaaaaaatgatgaGGTAGTCATTC
ATGGTTCCTTAGCAGGATAAACCAATCAGAGACTCAGAAGGAGCCTAAAG
ATGTAATGAAGTTACGGGGATATTCAGNCACAGAAACAAAAATATGGCAT
CGTCAACGAAATTTCTATTGCAGGCAACTCTGCTTTTCGTATTTATTGCC
ATGGTTCACAGTGGACAAGATCTCTTTACCGgTCCACGGCCAACTTTCAC
CACAGCAACATCAACCGTCACACCGAAAAACAAATGTGCTCATGCCTGCA
GAGACTTATCGATACCGATTGGCATCATGCGTTGCGCTAATTGTACAAGA
GTCAATTTCACTTTAAAGGACCTTGGAAAACCAACTTTTACCCCCACGTT
CACATGGGGTATTAAAATCACCAGACCTAACCAAAAAGTCATTACAAAAC
CAACAATAACAACAACCTTATCAAAGAGCTACGAAAGATTGTGCAAGGAG
TGCTTACAATACTCTATGAAACCAAAATTATGTCATCAAGTCTGCCAAGC
ATGGTTAAACGCCCAAACCACACCAACCTTGGCACCCCGTCCTCCAGCAG
TATTCAGAAACGGAAAAACTCAACCTCGACAACCTACAGCCAAACCCTCA
GAATCTGAAATCAAAGTAACCAGAATTACTGAAAAAGACTTAATTTCTAC
TTTGTTGGAATACAGAGAACGTGAGTTTTGGTTCGTTGCGTTCGCTTTTG
GTTGCGTGATCGTCTTGCTTCTCTTGATCGTCATCATGTTTTGCTCGCAC
AAACGACGCACGCACAAGATTGTCAAACCTCGAATGGATTTCTGCAACAT
CTAAACGATCtaactttaaaaaatgatgaGGTAGTCATTCATGGTTCCTT
AGCAGGATAAACCAATCAGAGACTCAGAAGGAGCCTAAAGATGTAATGAA
GTTACGGGGATATTCAGAGAACAGTCAATGTTGAATTCTCCCGATCAAAA
GCAACCCAATTATTGGATGAAATAAACTTTTACACCAATCCAAACTCAAA
CTCTATTATAAACCACTACGAGCTGGGACTCGATAAAGTGGAATGGAAAC
TCGCTTGAAAAAAATGAGGGTGTTTTATCcctctcaaaaagttaaaattt
aaaatatttttttgtttaaaaaatttctaatgTTATTTAATTTCAGTTGT
TTNCcctctcaaaaattaaaatttaaaatatttttttgtttaaaaaattt
ctaatgTTATTTAATTTCAGTTGTTTTAATACATGTAAATAGTTTTatgt
taaaattaaaaaagtttttgtacaaaatttatttttctattaaATATTGC
TGGTTCAATATATTTCGTAAATTAAAACA Run BLAST on NCBI transcript from alignment at scaffold_131:187688..189476- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047548 ID=TCONS_00047548|Name=TCONS_00047548|organism=Clytia hemisphaerica|type=transcript|length=1789bp|location=Sequence derived from alignment at scaffold_131:187688..189476- (Clytia hemisphaerica)
TAATTTCTACTTTGTTGGAGTACAGAGAACGTGAGTTTTGGTTCGTTGCG
TTCGCTTTTGGTTGCGTGATTGTCTTGCTTCTCTTGATCGTCATCATGTT
TTGCTCGCACAAACGACGCACGCACAAGATTGTCAAACCTCGAATGGATT
TCTGCAACATCTAAACGATCTAACTTTAAAAAATGATGAGGTAGTCATTC
ATGGTTCCTTAGCAGGATAAACCAATCAGAGACTCAGAAGGAGCCTAAAG
ATGTAATGAAGTTACGGGGATATTCAGNCACAGAAACAAAAATATGGCAT
CGTCAACGAAATTTCTATTGCAGGCAACTCTGCTTTTCGTATTTATTGCC
ATGGTTCACAGTGGACAAGATCTCTTTACCGGTAAGTTCAATTTTCCTTC
ACCTCATACATTTCTATTTATTTTTAATTCTACCCTCTTTACGCTGCTAG
TGATATTTTCACACATCAGCCCCTATAACCCTACTGCCTAACGAATTTCC
TGCTTGTATTTTGGCCGTAAATGATGCTGAATGAACACAGCAATAAAACT
TAAAAGCATGAATCAAAACATCAATTGCTGTATTTAACACATTTGAAAAT
TGCATTGAGTTCTTATCTTTAAATATTTTCCTTATTTTCAGGTCCACGGC
CAACTTTCACCACAGCAACATCAACCGTCACACCGAAAAACAAATGTGCT
CATGCCTGCAGAGACTTATCGATACCGATTGGCATCATGCGTTGCGCTAA
TTGTACAAGAGTCAATTTCACTTTAAAGGACCTTGGAAAACCAACTTTTA
CCCCCACGTTCACATGGGGTATTAAAATCACCAGACCTAACCAAAAAGTC
ATTACAAAACCAACAATAACAACAACCTTATCAAAGAGCTACGAAAGATT
GTGCAAGGAGTGCTTACAATACTCTATGAAACCAAAATTATGTCATCAAG
TCTGCCAAGCATGGTTAAACGCCCAAACCACACCAACCTTGGCACCCCGT
CCTCCAGCAGTATTCAGAAACGGAAAAACTCAACCTCGACAACCTACAGC
CAAACCCTCAGAATCTGAAATCAAAGTAACCAGAATTACTGAAAAAGACT
TAATTTCTACTTTGTTGGAATACAGAGAACGTGAGTTTTGGTTCGTTGCG
TTCGCTTTTGGTTGCGTGATCGTCTTGCTTCTCTTGATCGTCATCATGTT
TTGCTCGCACAAACGACGCACGCACAAGATTGTCAAACCTCGAATGGATT
TCTGCAACATCTAAACGATCTAACTTTAAAAAATGATGAGGTAGTCATTC
ATGGTTCCTTAGCAGGATAAACCAATCAGAGACTCAGAAGGAGCCTAAAG
ATGTAATGAAGTTACGGGGATATTCAGAGAACAGTCAATGTTGAATTCTC
CCGATCAAAAGCAACCCAATTATTGGATGAAATAAACTTTTACACCAATC
CAAACTCAAACTCTATTATAAACCACTACGAGCTGGGACTCGATAAAGTG
GAATGGAAACTCGCTTGAAAAAAATGAGGGTGTTTTATCCCTCTCAAAAA
GTTAAAATTTAAAATATTTTTTTGTTTAAAAAATTTCTAATGTTATTTAA
TTTCAGTTGTTTNCCCTCTCAAAAATTAAAATTTAAAATATTTTTTTGTT
TAAAAAATTTCTAATGTTATTTAATTTCAGTTGTTTTAATACATGTAAAT
AGTTTTATGTTAAAATTAAAAAAGTTTTTGTACAAAATTTATTTTTCTAT
TAAATATTGCTGGTTCAATATATTTCGTAAATTAAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047548-exon-scaffold_131-1575043694:189096..189476 | TCONS_00047548-exon-scaffold_131-1575043694:189096..189476 | Clytia hemisphaerica | exon |
| TCONS_00047548-exon-scaffold_131-1575043694:187688..188835 | TCONS_00047548-exon-scaffold_131-1575043694:187688..188835 | Clytia hemisphaerica | exon |
| TCONS_00047548-exon-scaffold_131-1510915933:189096..189476 | TCONS_00047548-exon-scaffold_131-1510915933:189096..189476 | Clytia hemisphaerica | exon |
| TCONS_00047548-exon-scaffold_131-1510915933:187688..188835 | TCONS_00047548-exon-scaffold_131-1510915933:187688..188835 | Clytia hemisphaerica | exon |
| TCONS_00047548-exon-scaffold_131-1491911889:189096..189476 | TCONS_00047548-exon-scaffold_131-1491911889:189096..189476 | Clytia hemisphaerica | exon |
| TCONS_00047548-exon-scaffold_131-1491911889:187688..188835 | TCONS_00047548-exon-scaffold_131-1491911889:187688..188835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_131 | supercontig | scaffold_131:187688..189476 - |
Blast
The following BLAST results are available for this feature:
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