TCONS_00047537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047537
Unique NameTCONS_00047537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047537 ID=TCONS_00047537|Name=TCONS_00047537|organism=Clytia hemisphaerica|type=transcript|length=3363bp
ACAATTTAAAGAAAGGTGCATTGGTTTCTAACATATTCGAActatttcag
aaaaatttgCTGTTCTAGCAGAAACGATGAACGTGGCGGTGATTGGTGGA
GGTATTTGCGGTCTGACAAGCGCTTACCAAGCTCTTAGTGAGAAATCATT
GAACATCAAACAATTGCATATTTACGCAGACAAATATCTATCTCAAACCA
CAAGCAACGGAGCGGCTGGACTATGCATAGCTGAAGATGTGTTCAATACA
CCACGAGAAAAACTTAACCGTTGGGGTAAAGATTCCTTAGAGTACGGTAG
AAAAATGATAGCTTTCGATCCTGattcagcagaaaaaggttTCCAGCCTG
TACACGGGTTTCTATTGAGCCGCAAACCTATTTCGGATATACGATGGGCT
CATCTCGGGATCTCATTCGTTATTATGAATGAGCAGGACATAAACCGGCG
TTTCCCGAATATCGATCCCGATATCAAATACGGTATTTCCTTCTCTACAC
ACACCTTAGAAAGTGGCCGTTACCTACCATACCTGACCAAAGAGATCGAA
AAGttaggtggaaaatttttcaaccgAAAGATCAAATCTTTGTCTGAGTT
ATCAgataaatatgacgtcatcattaatTGTTGTGGACTGGGTGCGAGTG
AATTGGTTGGTGATGACAAGATGATTCCTACACGTGGTCAAATCATGTAT
GTAAAAGCGCCCTGGATCAAAGAATTCGTATACAATATAGATTTCGAAGA
TGGTAAAGTGCCTTACCTTATACCAAATATTGACCGTGTTGTTGTTGGTG
GTACCAAGCAGACATACAACTCGTCCCTAGAGCTAAGTGAAAAAGATCGC
GACTGGATTTCGGAGAAAACTAAAAAGTTGGTTCCCAGTgttgaaaaaat
ggaaattatTGGAGATTGGATCGGAATCCGACCGGGTAGAGATGAAATCC
GTTTGGAATGTGAAATAATCAAGGCCCCTTCCGTTAACGACCCTAACCGG
ACCATCCCGGTCATCCATAATTACGGGCATGGATCAAACGGCATAACTTA
TAGTTGGGGATGTGGTGTCAATGTAATTGAACTAGTGAGAGCTCATTGTG
GAGTTAAATCGTCTTTGTAAGTGATTTCGAGTATATTGCACAACATTTTT
AGTGATATAATCTCGCCAAATTTTAAAGAACCTTTGTAAGTTTGAATATG
ACAAGAGTCTTTTATAGCCATTTAGTTTTTTGGTGCTTTCAGATTACACT
TTCACCTTGCTTTTTGAATCGTAATATCAAATACTGTATTATCAATAATT
TCTCTACAGTTCGGGAAACTGCATAGATCCGCAACGTTGCAAAATTTCGC
ATTTTTTGCGTTGTCATATTCCGCAGCACTGCCAAATTCCGCAGCTTTAC
CGATGGATAATTTCGCAGCCCTGGCCTATGGACCAAAACCGGGGTCGCAG
GGCCTGGTCTATGGACCAAAACCGGCGTCGCAGGGCCTGGACCGGGATCC
TAAAATAATGtgcattttgaagaacaacccaaaaggaaacttttcaccct
agcattttaatttcctacctaGCGATTATTCAATCATTCTTGGAAGAAAT
GCTACTTTGTTCAAGAATATGCCAGATTTTGCCTAATTTTGCTTCTATTT
GCGAAAGTTTCTCGTCATAGTTGGTGTTCATAATCGCACACTTTCATTGG
GAACGTTGCGAAAAGTTGCAGCGCGCGCAGCGAGGGAAAAACGCAACATT
GCGGAATTTTGCAACATTGCGGATCTATGCAATTTCTCGAACTGTCTAGG
AAGTTTATAAGTGTTTTGAATGAAAGCGGGCATTCTAGCATCCCAGACAC
ATATCTAACATTAATTGTGAATTCGAAAGTGTTAAGATGGAATTATTACA
TGATTTCAGAACGATCGTTAGTTGGTAGAGTCAATTGCGCAAATATTAAT
ACCTCTGGTTGTGcaacttaaaaaaataaaaaccaacCTTCTTTGTAGAC
TTGTAGAGttcttcaaagttgaacttCCAAACATTCCAGAACATTTTGGT
AGTTTTCCAATATTAGTTtagaatttttgttttatatatttttgtttccc
atcgctaaaaagaaaatcataaagaatTTAAAGTTGGAGGAAAATATTGA
GAATAAGGAAGATTTCTTAATAAGCCCGTGAGTTCAACCCTCGGTCATAA
GGTccataaaatttttattaaatgtatctatttttttttcatcttaaata
tttctagtaattgtaatttttcatataaaattagaaaattgtatataata
ataattttaaaaatagaatgaaattaTCAATACATCTATACAATAtataa
aaattcattttgaataaatctttccttaaaaaaaaattattttgaagcaa
aaattgATTGTAAGACGCCAGGTCAGGTTTACACTATAATGATCCTCAGG
TAAATTTAACTCCGATACTCAGAAAACTGTTTTCCATCAGGTTTTCATGC
TCTAATTTACCAAGTATATAGAGTTTATACTTAATGGCTTTATTCCATGA
CACAACAGATATTTTCTCGAAGAGCACcattcaaacaaaattatagCCTT
CTTAAAAACGTTGGTTGGATAGAAACAACCTCTTTTCTCGCCTTCGATAT
GTGTAGTGTTGAAAAATAAGTTAAGTATCGCACGACTTGTCAGCTAAAAT
TAAGATTCTTTTTCTTCGGCTGATTCAAGGTGTATCTATTCCAGTTATAA
GCAAAAGATCAGTACCCTTCTCACAGCCTTTTCTTATCTCATTCTTATCG
TCAAGTAGGAGTCTGGATAACTTTTCTATCGAGTAAATCTTGTATATGAG
GggcatcaaaatttaaaatatcttgcAGAACTTTTCTTGTGTGTTCCCCA
AGTAATGGAGGTGGGGATGGGATGCTTGTTTCTTCGCCAAAGTCATCATA
TTCAAAATCAACAGCAGGCCCTATTAAGAAAAGAAGATAGTAAACTGACT
GAAAAGACAGCAATGTCCATCAAAAGAGCTAAGGAAAGCACTTAAAGCAA
AGACGGCCCCTCAAAACTTCTAGTATAGATGAATTTTATCGTTATGCTAT
AAAATGTCATAATTTTAGACAATGGTAAACTCAGGGTCGCCAGGATATCT
GTTAAGTAGAAGTATATGTTATGGGATTAAATGAAACAAAAGTTATACCA
AGTTGATGAAGGCTGTCAAAAATCAAAGGTCTGTCATTAGAAGAGTATGC
ACCAAAAATGCTGTGTTGTTTCTACTGAATTTCGTCGACAGTTGCAGAAG
GGGTCAACTGTGCCTGCAAGATGGTGACTGAAACCCACCCATCATATAGT
TATCAGTGGTTCC
Run BLAST on NCBI

protein sequence of TCONS_00047537-protein

>TCONS_00047537-protein ID=TCONS_00047537-protein|Name=TCONS_00047537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MNVAVIGGGICGLTSAYQALSEKSLNIKQLHIYADKYLSQTTSNGAAGLC
IAEDVFNTPREKLNRWGKDSLEYGRKMIAFDPDSAEKGFQPVHGFLLSRK
PISDIRWAHLGISFVIMNEQDINRRFPNIDPDIKYGISFSTHTLESGRYL
PYLTKEIEKLGGKFFNRKIKSLSELSDKYDVIINCCGLGASELVGDDKMI
PTRGQIMYVKAPWIKEFVYNIDFEDGKVPYLIPNIDRVVVGGTKQTYNSS
LELSEKDRDWISEKTKKLVPSVEKMEIIGDWIGIRPGRDEIRLECEIIKA
PSVNDPNRTIPVIHNYGHGSNGITYSWGCGVNVIELVRAHCGVKSSL
Run BLAST on NCBI

transcript from alignment at scaffold_131:120878..124788-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047537 ID=TCONS_00047537|Name=TCONS_00047537|organism=Clytia hemisphaerica|type=transcript|length=3911bp|location=Sequence derived from alignment at scaffold_131:120878..124788- (Clytia hemisphaerica)
ACAATTTAAAGAAAGGTGCATTGGTTTCTAACATATTCGAACTATTTCAG AAAAATTTGCTGTTCTAGCAGAAACGATGGTGAGTGCCGGTTTATTCATT TTTTATTCACAATTTCACTGAAGTGATGGCTGTTTCAAGCAAGTTTGCTT GTTTCAAGGGAGTATGCACAATAGAAAGGGAGATTGTTACATTATCTACT TGCGGACGACAGCCGAGAGGAGCAACTGCACATTTCTGACCGAGGGTGCT AGTGATTACATAAATCATTTCCATCGACAAAACAAACGATTATGATATCA AAATTGGGTTATGGCACTTAAAGTATTAAATGATAAATTCATGATAATCG CTCATAGCCAAATTGTATTGGGATTTCAAAATATATTTCGTCGTTTTAAG AATTTGAAATTCGAGTTCGAGGCTATTTTGGGAAACATTTTGAGTTTTTG AATCAGCTAAAGGGTCCTAAAGCTCAGAGCAAAAACATTCCTAAAGGAAG TTTTATTTGCGGTTTATTATTGTGCAGGGAATTCCCCTTTTGTCCCGAAT ATAGCGTCCTTGATTGTAGCCAATGAGATCTGATCCTTCTTTCAACAATG CTTATTTCAACAAATCTTCACTTTCAGAACGTGGCGGTGATTGGTGGAGG TATTTGCGGTCTGACAAGCGCTTACCAAGCTCTTAGTGAGAAATCATTGA ACATCAAACAATTGCATATTTACGCAGACAAATATCTATCTCAAACCACA AGCAACGGAGCGGCTGGACTATGCATAGCTGAAGATGTGTTCAATACACC ACGAGAAAAACTTAACCGTTGGGGTAAAGATTCCTTAGAGTACGGTAGAA AAATGATAGCTTTCGATCCTGATTCAGCAGAAAAAGGTTTCCAGCCTGTA CACGGGTTTCTATTGAGCCGCAAACCTATTTCGGATATACGATGGGCTCA TCTCGGGATCTCATTCGTTATTATGAATGAGCAGGACATAAACCGGCGTT TCCCGAATATCGATCCCGATATCAAATACGGTATTTCCTTCTCTACACAC ACCTTAGAAAGTGGCCGTTACCTACCATACCTGACCAAAGAGATCGAAAA GTTAGGTGGAAAATTTTTCAACCGAAAGATCAAATCTTTGTCTGAGTTAT CAGATAAATATGACGTCATCATTAATTGTTGTGGACTGGGTGCGAGTGAA TTGGTTGGTGATGACAAGATGATTCCTACACGTGGTCAAATCATGTATGT AAAAGCGCCCTGGATCAAAGAATTCGTATACAATATAGATTTCGAAGATG GTAAAGTGCCTTACCTTATACCAAATATTGACCGTGTTGTTGTTGGTGGT ACCAAGCAGACATACAACTCGTCCCTAGAGCTAAGTGAAAAAGATCGCGA CTGGATTTCGGAGAAAACTAAAAAGTTGGTTCCCAGTGTTGAAAAAATGG AAATTATTGGAGATTGGATCGGAATCCGACCGGGTAGAGATGAAATCCGT TTGGAATGTGAAATAATCAAGGCCCCTTCCGTTAACGACCCTAACCGGAC CATCCCGGTCATCCATAATTACGGGCATGGATCAAACGGCATAACTTATA GTTGGGGATGTGGTGTCAATGTAATTGAACTAGTGAGAGCTCATTGTGGA GTTAAATCGTCTTTGTAAGTGATTTCGAGTATATTGCACAACATTTTTAG TGATATAATCTCGCCAAATTTTAAAGAACCTTTGTAAGTTTGAATATGAC AAGAGTCTTTTATAGCCATTTAGTTTTTTGGTGCTTTCAGATTACACTTT CACCTTGCTTTTTGAATCGTAATATCAAATACTGTATTATCAATAATTTC TCTACAGTTCGGGAAACTGCATAGATCCGCAACGTTGCAAAATTTCGCAT TTTTTGCGTTGTCATATTCCGCAGCACTGCCAAATTCCGCAGCTTTACCG ATGGATAATTTCGCAGCCCTGGCCTATGGACCAAAACCGGGGTCGCAGGG CCTGGTCTATGGACCAAAACCGGCGTCGCAGGGCCTGGACCGGGATCCTA AAATAATGTGCATTTTGAAGAACAACCCAAAAGGAAACTTTTCACCCTAG CATTTTAATTTCCTACCTAGCGATTATTCAATCATTCTTGGAAGAAATGC TACTTTGTTCAAGAATATGCCAGATTTTGCCTAATTTTGCTTCTATTTGC GAAAGTTTCTCGTCATAGTTGGTGTTCATAATCGCACACTTTCATTGGGA ACGTTGCGAAAAGTTGCAGCGCGCGCAGCGAGGGAAAAACGCAACATTGC GGAATTTTGCAACATTGCGGATCTATGCAATTTCTCGAACTGTCTAGGAA GTTTATAAGTGTTTTGAATGAAAGCGGGCATTCTAGCATCCCAGACACAT ATCTAACATTAATTGTGAATTCGAAAGTGTTAAGATGGAATTATTACATG ATTTCAGAACGATCGTTAGTTGGTAGAGTCAATTGCGCAAATATTAATAC CTCTGGTTGTGCAACTTAAAAAAATAAAAACCAACCTTCTTTGTAGACTT GTAGAGTTCTTCAAAGTTGAACTTCCAAACATTCCAGAACATTTTGGTAG TTTTCCAATATTAGTTTAGAATTTTTGTTTTATATATTTTTGTTTCCCAT CGCTAAAAAGAAAATCATAAAGAATTTAAAGTTGGAGGAAAATATTGAGA ATAAGGAAGATTTCTTAATAAGCCCGTGAGTTCAACCCTCGGTCATAAGG TCCATAAAATTTTTATTAAATGTATCTATTTTTTTTTCATCTTAAATATT TCTAGTAATTGTAATTTTTCATATAAAATTAGAAAATTGTATATAATAAT AATTTTAAAAATAGAATGAAATTATCAATACATCTATACAATATATAAAA ATTCATTTTGAATAAATCTTTCCTTAAAAAAAAATTATTTTGAAGCAAAA ATTGATTGTAAGACGCCAGGTCAGGTTTACACTATAATGATCCTCAGGTA AATTTAACTCCGATACTCAGAAAACTGTTTTCCATCAGGTTTTCATGCTC TAATTTACCAAGTATATAGAGTTTATACTTAATGGCTTTATTCCATGACA CAACAGATATTTTCTCGAAGAGCACCATTCAAACAAAATTATAGCCTTCT TAAAAACGTTGGTTGGATAGAAACAACCTCTTTTCTCGCCTTCGATATGT GTAGTGTTGAAAAATAAGTTAAGTATCGCACGACTTGTCAGCTAAAATTA AGATTCTTTTTCTTCGGCTGATTCAAGGTGTATCTATTCCAGTTATAAGC AAAAGATCAGTACCCTTCTCACAGCCTTTTCTTATCTCATTCTTATCGTC AAGTAGGAGTCTGGATAACTTTTCTATCGAGTAAATCTTGTATATGAGGG GCATCAAAATTTAAAATATCTTGCAGAACTTTTCTTGTGTGTTCCCCAAG TAATGGAGGTGGGGATGGGATGCTTGTTTCTTCGCCAAAGTCATCATATT CAAAATCAACAGCAGGCCCTATTAAGAAAAGAAGATAGTAAACTGACTGA AAAGACAGCAATGTCCATCAAAAGAGCTAAGGAAAGCACTTAAAGCAAAG ACGGCCCCTCAAAACTTCTAGTATAGATGAATTTTATCGTTATGCTATAA AATGTCATAATTTTAGACAATGGTAAACTCAGGGTCGCCAGGATATCTGT TAAGTAGAAGTATATGTTATGGGATTAAATGAAACAAAAGTTATACCAAG TTGATGAAGGCTGTCAAAAATCAAAGGTCTGTCATTAGAAGAGTATGCAC CAAAAATGCTGTGTTGTTTCTACTGAATTTCGTCGACAGTTGCAGAAGGG GTCAACTGTGCCTGCAAGATGGTGACTGAAACCCACCCATCATATAGTTA TCAGTGGTTCC

Coding sequence (CDS) from alignment at scaffold_131:120878..124788-

>TCONS_00047537 ID=TCONS_00047537|Name=TCONS_00047537|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_131:120878..124788- (Clytia hemisphaerica)
AACGTGGCGGTGATTGGTGGAGGTATTTGCGGTCTGACAAGCGCTTACCA
AGCTCTTAGTGAGAAATCATTGAACATCAAACAATTGCATATTTACGCAG
ACAAATATCTATCTCAAACCACAAGCAACGGAGCGGCTGGACTATGCATA
GCTGAAGATGTGTTCAATACACCACGAGAAAAACTTAACCGTTGGGGTAA
AGATTCCTTAGAGTACGGTAGAAAAATGATAGCTTTCGATCCTGATTCAG
CAGAAAAAGGTTTCCAGCCTGTACACGGGTTTCTATTGAGCCGCAAACCT
ATTTCGGATATACGATGGGCTCATCTCGGGATCTCATTCGTTATTATGAA
TGAGCAGGACATAAACCGGCGTTTCCCGAATATCGATCCCGATATCAAAT
ACGGTATTTCCTTCTCTACACACACCTTAGAAAGTGGCCGTTACCTACCA
TACCTGACCAAAGAGATCGAAAAGTTAGGTGGAAAATTTTTCAACCGAAA
GATCAAATCTTTGTCTGAGTTATCAGATAAATATGACGTCATCATTAATT
GTTGTGGACTGGGTGCGAGTGAATTGGTTGGTGATGACAAGATGATTCCT
ACACGTGGTCAAATCATGTATGTAAAAGCGCCCTGGATCAAAGAATTCGT
ATACAATATAGATTTCGAAGATGGTAAAGTGCCTTACCTTATACCAAATA
TTGACCGTGTTGTTGTTGGTGGTACCAAGCAGACATACAACTCGTCCCTA
GAGCTAAGTGAAAAAGATCGCGACTGGATTTCGGAGAAAACTAAAAAGTT
GGTTCCCAGTGTTGAAAAAATGGAAATTATTGGAGATTGGATCGGAATCC
GACCGGGTAGAGATGAAATCCGTTTGGAATGTGAAATAATCAAGGCCCCT
TCCGTTAACGACCCTAACCGGACCATCCCGGTCATCCATAATTACGGGCA
TGGATCAAACGGCATAACTTATAGTTGGGGATGTGGTGTCAATGTAATTG
AACTAGTGAGAGCTCATTGTGGAGTTAAATCGTCTTTGTAAATGAACGTG
GCGGTGATTGGTGGAGGTATTTGCGGTCTGACAAGCGCTTACCAAGCTCT
TAGTGAGAAATCATTGAACATCAAACAATTGCATATTTACGCAGACAAAT
ATCTATCTCAAACCACAAGCAACGGAGCGGCTGGACTATGCATAGCTGAA
GATGTGTTCAATACACCACGAGAAAAACTTAACCGTTGGGGTAAAGATTC
CTTAGAGTACGGTAGAAAAATGATAGCTTTCGATCCTGATTCAGCAGAAA
AAGGTTTCCAGCCTGTACACGGGTTTCTATTGAGCCGCAAACCTATTTCG
GATATACGATGGGCTCATCTCGGGATCTCATTCGTTATTATGAATGAGCA
GGACATAAACCGGCGTTTCCCGAATATCGATCCCGATATCAAATACGGTA
TTTCCTTCTCTACACACACCTTAGAAAGTGGCCGTTACCTACCATACCTG
ACCAAAGAGATCGAAAAGTTAGGTGGAAAATTTTTCAACCGAAAGATCAA
ATCTTTGTCTGAGTTATCAGATAAATATGACGTCATCATTAATTGTTGTG
GACTGGGTGCGAGTGAATTGGTTGGTGATGACAAGATGATTCCTACACGT
GGTCAAATCATGTATGTAAAAGCGCCCTGGATCAAAGAATTCGTATACAA
TATAGATTTCGAAGATGGTAAAGTGCCTTACCTTATACCAAATATTGACC
GTGTTGTTGTTGGTGGTACCAAGCAGACATACAACTCGTCCCTAGAGCTA
AGTGAAAAAGATCGCGACTGGATTTCGGAGAAAACTAAAAAGTTGGTTCC
CAGTGTTGAAAAAATGGAAATTATTGGAGATTGGATCGGAATCCGACCGG
GTAGAGATGAAATCCGTTTGGAATGTGAAATAATCAAGGCCCCTTCCGTT
AACGACCCTAACCGGACCATCCCGGTCATCCATAATTACGGGCATGGATC
AAACGGCATAACTTATAGTTGGGGATGTGGTGTCAATGTAATTGAACTAG
TGAGAGCTCATTGTGGAGTTAAATCGTCTTTGTAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030280XLOC_030280Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047537-proteinTCONS_00047537-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047537-exon-scaffold_131-1575043694:124710..124788TCONS_00047537-exon-scaffold_131-1575043694:124710..124788Clytia hemisphaericaexon
TCONS_00047537-exon-scaffold_131-1575043694:120878..124161TCONS_00047537-exon-scaffold_131-1575043694:120878..124161Clytia hemisphaericaexon
TCONS_00047537-exon-scaffold_131-1510915933:124710..124788TCONS_00047537-exon-scaffold_131-1510915933:124710..124788Clytia hemisphaericaexon
TCONS_00047537-exon-scaffold_131-1510915933:120878..124161TCONS_00047537-exon-scaffold_131-1510915933:120878..124161Clytia hemisphaericaexon
TCONS_00047537-exon-scaffold_131-1491911889:124710..124788TCONS_00047537-exon-scaffold_131-1491911889:124710..124788Clytia hemisphaericaexon
TCONS_00047537-exon-scaffold_131-1491911889:120878..124161TCONS_00047537-exon-scaffold_131-1491911889:120878..124161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:120878..124788 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0882906 0.14265 0.34282 0.341195 39.8923 29.1251 5.44658 5.74402 2.50016 2.58163 2.79685 1.8766 4.57592 4.21103 6.99613 8.0274 2.10086 1.95579 5.34887 2.874 4.54793 4.56223 5.24563 3.54764 5.48455 2.38734 0.806407 0.889501 3.70556 3.11401
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023209DAO
IPR006076FAD-dep_OxRdtase
Vocabulary: Molecular Function
TermDefinition
GO:0003884D-amino-acid oxidase activity
GO:0071949FAD binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0046416D-amino acid metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046416 D-amino acid metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003884 D-amino-acid oxidase activity
molecular_function GO:0071949 FAD binding
molecular_function GO:0016491 oxidoreductase activity
Blast
BLAST of TCONS_00047537 vs. Swiss-Prot (Human)
Match: OXDD (D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.505e-49
Identity = 109/342 (31.87%), Postives = 182/342 (53.22%), Query Frame = 2
Query:   71 ETMNVAVIGGGICGLTSAYQALSEKSLNIKQLHIYADKYLSQTTSNGAAGLCIAEDVFNTPREKLNRWGKDSLEYGRKMIAFDPDSAEKGFQPVHGF-LLSRKPISDIR-WAHLGISFVIMNEQDINRRFPNIDPDIKYGISFSTHTLESGRYLPYLTKEIEKLGGKFFNRKIKSLSELSDKYDVIINCCGLGASELVGDDKMIPTRGQIMYVKAPWIKEFVYNIDFEDGK-VPYLIPNIDRVVVGGTKQTYNSSLELSEKDRDWISEKTKKLVPSVEKMEIIGDWIGIRPGRDEIRLECEIIKAPSVNDPNRTIPVIHNYGHGSNGITYSWGCGVNVIELV 1087
            +T  +AV+G G+ GL++A      K +    + I +DK+   TTS+ AAG+ I     +TP     +W +++  +    IA   ++ + G   V G+ +    P  ++  WA + + F  M E ++ ++FP       +G +F+T   E   YLP+L K I+  GG    R+I+ L EL   +D+++NC GLG+ +L GD K+ P RGQ++ V+APW++ F+      DG  + Y+ P    V +GGT+Q  + +L    ++   I  +   L PS+     I + +G+RP R  +RL+ E++      D  R +PV+H+YGHGS GI+  WG  +    LV
Sbjct:    2 DTARIAVVGAGVVGLSTA--VCISKLVPRCSVTIISDKFTPDTTSDVAAGMLIPHTYPDTPIHTQKQWFRETFNH-LFAIANSAEAGDAGVHLVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAEL-KKFPQY----VFGQAFTTLKCECPAYLPWLEKRIKGSGGWTLTRRIEDLWELHPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAPWVEHFI-----RDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEPSLHGACNIREKVGLRPYRPGVRLQTELL----ARDGQR-LPVVHHYGHGSGGISVHWGTALEAARLV 325          
The following BLAST results are available for this feature:
BLAST of TCONS_00047537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OXDD4.505e-4931.87D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV... [more]
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