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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047535 ID=TCONS_00047535|Name=TCONS_00047535|organism=Clytia hemisphaerica|type=transcript|length=4214bpRun BLAST on NCBI protein sequence of TCONS_00047535-protein >TCONS_00047535-protein ID=TCONS_00047535-protein|Name=TCONS_00047535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1054bp MVDKMSELSRQQKLASAKKKLKKFQQAKSPATPQENGNLSQEILQGLQSNRun BLAST on NCBI transcript from alignment at scaffold_131:78572..102343- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047535 ID=TCONS_00047535|Name=TCONS_00047535|organism=Clytia hemisphaerica|type=transcript|length=23772bp|location=Sequence derived from alignment at scaffold_131:78572..102343- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_131:78572..102343- >TCONS_00047535 ID=TCONS_00047535|Name=TCONS_00047535|organism=Clytia hemisphaerica|type=CDS|length=66465bp|location=Sequence derived from alignment at scaffold_131:78572..102343- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047535 vs. Swiss-Prot (Human)
Match: GOGA2 (Golgin subfamily A member 2 OS=Homo sapiens GN=GOLGA2 PE=1 SV=3) HSP 1 Score: 145.591 bits (366), Expect = 4.714e-35 Identity = 129/431 (29.93%), Postives = 232/431 (53.83%), Query Frame = 2
Query: 668 KRSNEQLSNQVGEQRKQILQLQEKVKESTVALQKVADQKALKEQLEVHIQTIGILVSEKSELQSSLTNVQKKLTTKDTEMTNLNEQFKSLQGKLLDFEKASSDFKEAEGTLRKNNKELVTERERISTKLYEVSHQKEELNLQNSELQSKLQMKISECDSIMRQLNELQ-------LHLQNGNQTNNAQSQNLQ-----EEHMKLTKTLEEQKLIVERLVQDKSELLEKNHDTQSHYEEQLEHLRNQVNKAENEKQNALEQSRVLSESIDELQNQLNATQELEPASTPAEVIQPSIPAPLANNVDLDTIKNEKESVERELDIQIAENRRLSRMSVELNQKIETLETTISRLQGESLDRSSLLEQIQSDKDTLSRALQQNKKLKEQLVELEDGFVKMSNSSADLTNKLETEQHGSKDMAVRFSEIKIELEEAK 1924
K+ N+++++Q+ E++K+ Q Q AL+EQL+VHIQTIGILVSEK+ELQ++L + Q K+ E +L + + + ++ + E+A S + + NKEL ER+ + +LY+ + E+L + SEL+ KL++ ++E + L ELQ L LQ + A N Q EE +L L + V +L ++ + E + + ++++ + QV+ EK+ ++ + + L S+ EL+NQ+ EP + P+EV Q + + ++ E E + +L Q+ +N LSR++ E +++ LE ++ R +LE +Q+D+ T+SRAL QN++LKEQL EL+ GFVK++N + ++T+ L++EQH +++ + E++ +L E K
Sbjct: 188 KQQNQEITDQLEEEKKECHQ----------------KQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQ-------QLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELK 595 HSP 2 Score: 88.9669 bits (219), Expect = 1.223e-17 Identity = 41/108 (37.96%), Postives = 73/108 (67.59%), Query Frame = 2
Query: 2726 GITMPLLKTAFMQLQKRYKSAMDSKANLSDRIEQLEHMNMRLESETETIGEYITLYQTQRQAMKDKFTEKDDIINRISNEHGRMQTKVTQLHQLVMQMLSERSGYESK 3049
G T L+ A +LQ R+ M KA+L +R+E+LEH ++L ET+TIGEYI LYQ+QR +K++ EK++ I+R++ + M+ K+ +L +LV++++ +R+ + +
Sbjct: 795 GETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGR 902 The following BLAST results are available for this feature:
BLAST of TCONS_00047535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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